ggKbase home page

ar4r2_scaffold_6540_4

Organism: ALUMROCK_MS4_Thiothrix_nivea-related_50_537

near complete RP 42 / 55 MC: 3 BSCG 45 / 51 MC: 8 ASCG 12 / 38 MC: 4
Location: 2681..3076

Top 3 Functional Annotations

Value Algorithm Source
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; T similarity UNIPROT
DB: UniProtKB
  • Identity: 82.4
  • Coverage: 131.0
  • Bit_score: 215
  • Evalue 3.50e-53
Ribonuclease VapC n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BQM4_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 83.2
  • Coverage: 131.0
  • Bit_score: 217
  • Evalue 1.10e-53
PilT domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 39.7
  • Coverage: 126.0
  • Bit_score: 106
  • Evalue 8.00e-21

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Thiothrix nivea → Thiothrix → Thiotrichales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 396
TTGATTCTGGTTGATACCGACGTATTGATTTGGGTAACGCGCAAAGACTCTCACGCCAGTGCATTTCTGGACAGCTTCGATGACCTCGCCATATCTGACGTGACCTACATGGAACTGATTCAAGGCGCAAAAAACAAGCGTGAAGCCCAAGCCATCGACAAAACCCTCAAAAACATGGAAGTGTTACGCCTGCCAATCACGAGCAGCATCTCAGAGAATGCCGTGTCACTGGTTCGCCGCTACTTCCACAGCCATGCCATGCAACTTGCCGATGCACTGATTGCCGCAACTGCATTGGAACATGGATTGGGGTTGGCAACGGGTAACGTCAAACATTTTGAGGTAGTGGAAGGGTTACGCTTGCACAGATACATTCCACAACCAAAAGCAACTTAA
PROTEIN sequence
Length: 132
LILVDTDVLIWVTRKDSHASAFLDSFDDLAISDVTYMELIQGAKNKREAQAIDKTLKNMEVLRLPITSSISENAVSLVRRYFHSHAMQLADALIAATALEHGLGLATGNVKHFEVVEGLRLHRYIPQPKAT*