ggKbase home page

ar4r2_scaffold_682

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_682_1
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..926)
DNA (924bp) protein (308aa)
CHU large protein n=1 Tax=Beggiatoa sp. PS RepID=A7BS52_9GAMM
CHU large protein
CHU large protein {ECO:0000313|EMBL:BAP56873.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_682_2
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1066..2712)
DNA (1647bp) protein (549aa)
Putative uncharacterized protein n=1 Tax=Beggiatoa sp. PS RepID=A7BUP5_9GAMM
PEP-CTERM putative exosortase interaction domain-containing protein
PEP-CTERM putative exosortase interaction domain-containing protein {ECO:0000313|EMBL:BAP56874.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Th
ar4r2_scaffold_682_3
Pseudomonas syringae, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3257..4351)
DNA (1095bp) protein (365aa)
Aminotransferase, class I and II n=1 Tax=Pseudomonas syringae pv. aceris str. M302273 RepID=F3JF80_PSESX
Aminotransferase, class I and II {ECO:0000313|EMBL:EGH70503.1}; TaxID=629270 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringa
class I and II aminotransferase
ar4r2_scaffold_682_4
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4352..5398)
DNA (1047bp) protein (349aa)
Methyltransferase type 12 n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TTG4_ACIAC rbh
type 12 methyltransferase
Methyltransferase type 12 {ECO:0000313|EMBL:ABM34252.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli
ar4r2_scaffold_682_5
unknown

Not on your lists

comp(5451..5726)
DNA (276bp) protein (92aa)

This feature has no annotations

ar4r2_scaffold_682_6
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5713..6678)
DNA (966bp) protein (322aa)
Cation diffusion facilitator family transporter n=1 Tax=Calothrix sp. PCC 6303 RepID=K9V9F1_9CYAN rbh
Cation transporter {ECO:0000313|EMBL:KHD04621.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita
cation diffusion facilitator family transporter
ar4r2_scaffold_682_7
Paenibacillus polymyxa, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6693..10613)
DNA (3921bp) protein (1307aa)
Putative non-ribosomal peptide synthase n=2 Tax=Clostridium botulinum RepID=E8ZQP9_CLOB0 rbh
amino acid adenylation domain protein
Uncharacterized protein {ECO:0000313|EMBL:AIY07093.1}; TaxID=1406 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus polymyxa (Bacillus polymy
ar4r2_scaffold_682_8
Bacillus mycoides, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(10637..12058)
DNA (1422bp) protein (474aa)
D-alanine--poly(Phosphoribitol) ligase, subunit 1 {ECO:0000313|EMBL:KFM95708.1}; EC=6.1.1.13 {ECO:0000313|EMBL:KFM95708.1};; TaxID=1405 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae;
Bacitracin synthetase 1 (Fragment) n=1 Tax=Paenibacillus alvei TS-15 RepID=S9SGF7_PAEAL
bacitracin synthetase 1
ar4r2_scaffold_682_9
Brevibacillus laterosporus, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(12089..12769)
DNA (681bp) protein (227aa)
Amino acid adenylation domain-containing protein n=1 Tax=Acetonema longum DSM 6540 RepID=F7NDS9_9FIRM
Bacitracin synthetase {ECO:0000313|EMBL:AKF95987.1}; TaxID=1465 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus laterosporus (Bacillus late
NRPS domain-containing protein
ar4r2_scaffold_682_10
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12990..21320)
DNA (8331bp) protein (2777aa)
amino acid adenylation domain-containing protein (EC:2.3.1.94 5.1.1.13)
Amino acid adenylation domain protein n=1 Tax=Clostridium termitidis CT1112 RepID=S0FKH0_9CLOT rbh
Amino acid adenylation domain protein {ECO:0000313|EMBL:EMS72715.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium]
ar4r2_scaffold_682_11
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21350..22402)
DNA (1053bp) protein (351aa)
Subfamily IIIC HAD-superfamily phosphatase n=1 Tax=Microcoleus sp. PCC 7113 RepID=K9WCZ6_9CYAN rbh
subfamily IIIC HAD-superfamily phosphatase
Subfamily IIIC HAD-superfamily phosphatase {ECO:0000313|EMBL:BAP56504.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thiopl
ar4r2_scaffold_682_12
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22417..23574)
DNA (1158bp) protein (386aa)
Acyl-CoA dehydrogenase n=1 Tax=Microcoleus sp. PCC 7113 RepID=K9WB74_9CYAN rbh
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KHD04640.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomarga
acyl-CoA dehydrogenase
ar4r2_scaffold_682_13
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23608..23862)
DNA (255bp) protein (85aa)
Putative uncharacterized protein n=1 Tax=Beggiatoa sp. SS RepID=A7BP74_9GAMM
D-alanyl carrier protein {ECO:0000313|EMBL:KHD04641.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomar
putative D-alanyl carrier protein
ar4r2_scaffold_682_14
unknown

Not on your lists

24002..24355
DNA (354bp) protein (118aa)

This feature has no annotations

ar4r2_scaffold_682_15
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24380..26146
DNA (1767bp) protein (589aa)
Surface antigen (D15) n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BUM0_NITHN rbh
surface antigen rbh
Surface antigen {ECO:0000313|EMBL:BAP56175.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_682_16
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26427..27863
DNA (1437bp) protein (479aa)
Mg2+ transporter MgtE n=1 Tax=Beggiatoa alba B18LD RepID=I3CFZ0_9GAMM rbh
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18L
magnesium transporter MgtE
ar4r2_scaffold_682_17
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28198..29181
DNA (984bp) protein (328aa)
ClpP class periplasmic serine protease n=1 Tax=Beggiatoa alba B18LD RepID=I3CKL2_9GAMM rbh
peptidase S49
Peptidase S49 {ECO:0000313|EMBL:BAP57728.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_682_18
Oscillatoria nigro-viridis, Oscillatoria, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(29263..30681)
DNA (1419bp) protein (473aa)
Response regulator receiver sensor signal transduction histidine kinase n=1 Tax=Oscillatoria nigro-viridis PCC 7112 RepID=K9VT48_9CYAN rbh
response regulator receiver sensor signal transduction histidine kinase
Response regulator receiver sensor signal transduction histidine kinase {ECO:0000313|EMBL:AFZ10415.1}; TaxID=179408 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Oscillator
ar4r2_scaffold_682_19
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30861..32174
DNA (1314bp) protein (438aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyru
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Beggiatoa alba B18LD RepID=I3CGC5_9GAMM rbh
3-phosphoshikimate 1-carboxyvinyltransferase
ar4r2_scaffold_682_20
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32479..33900
DNA (1422bp) protein (474aa)
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Beggiatoa alba B18LD RepID=I3CGK0_9GAMM
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains {ECO:0000313|EMBL:EIJ42743.1}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales;
Two-component response regulator PilR
ar4r2_scaffold_682_21
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34067..34744)
DNA (678bp) protein (226aa)
V-type ATPase subunit D n=1 Tax=Beggiatoa sp. PS RepID=A7C6K4_9GAMM
V-type ATPase subunit D
V-type ATP synthase subunit D {ECO:0000256|HAMAP-Rule:MF_00271}; V-ATPase subunit D {ECO:0000256|HAMAP-Rule:MF_00271}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales
ar4r2_scaffold_682_22
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34710..35369)
DNA (660bp) protein (220aa)
Secreted protein n=1 Tax=Beggiatoa sp. PS RepID=A7C3V7_9GAMM
secreted protein
Secreted protein {ECO:0000313|EMBL:EDN66528.1}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
ar4r2_scaffold_682_23
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35362..36168)
DNA (807bp) protein (269aa)
Ribosomal RNA large subunit methyltransferase L n=2 Tax=sulfur-oxidizing symbionts RepID=G2DH62_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAP55130.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_682_24
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36344..37294
DNA (951bp) protein (317aa)
Membrane protease subunit, stomatin/prohibitin n=1 Tax=Beggiatoa alba B18LD RepID=I3CC51_9GAMM
Membrane protein {ECO:0000313|EMBL:KHD10237.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita n
membrane protein
ar4r2_scaffold_682_25
Fischerella sp. JSC-11, Fischerella, Stigonematales, Cyanobacteria, Bacteria

Not on your lists

comp(37357..39522)
DNA (2166bp) protein (722aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=741277 species="Bacteria; Cyanobacteria; Stigonematales; Fischerella.;" source="Fischerella sp. JS
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Fischerella sp. JSC-11 RepID=G6FRZ2_9CYAN
multi-sensor signal transduction histidine kinase
ar4r2_scaffold_682_26
unknown

Not on your lists

comp(39697..39915)
DNA (219bp) protein (73aa)

This feature has no annotations

Displaying 26 items

View Taxonomy