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ar4r2_scaffold_835

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_835_trna_2
unknown

Not on your lists

comp(89..161)
DNA (73bp)
transferRNA
ar4r2_scaffold_835_trna_1
unknown

Not on your lists

comp(212..284)
DNA (73bp)
transferRNA
ar4r2_scaffold_835_1
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

544..1230
DNA (687bp) protein (229aa)
Adenylate cyclase n=1 Tax=Beggiatoa sp. PS RepID=A7C1P0_9GAMM
Adenylate cyclase {ECO:0000313|EMBL:EDN67294.1}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
adenylate cyclase
ar4r2_scaffold_835_2
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1194..1952
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Beggiatoa alba B18LD RepID=I3CFR3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KHD07269.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomarg
adenylate cyclase
ar4r2_scaffold_835_3
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1976..3061
DNA (1086bp) protein (362aa)
FAD dependent oxidoreductase n=1 Tax=Beggiatoa sp. PS RepID=A7BWK7_9GAMM rbh
FAD dependent oxidoreductase
FAD dependent oxidoreductase {ECO:0000313|EMBL:BAP55451.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_835_4
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3187..3987
DNA (801bp) protein (267aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Beggiatoa sp. PS RepID=A7C0M9_9GAMM
ribosomal RNA adenine methylase transferase
ar4r2_scaffold_835_5
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4066..5046
DNA (981bp) protein (327aa)
Diguanylate cyclase (GGDEF domain) n=1 Tax=Beggiatoa sp. PS RepID=A7C1M7_9GAMM
diguanylate cyclase
Diguanylate cyclase {ECO:0000313|EMBL:BAP56990.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_835_6
unknown

Not on your lists

comp(5274..5957)
DNA (684bp) protein (228aa)

This feature has no annotations

ar4r2_scaffold_835_7
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6348..6782
DNA (435bp) protein (145aa)
30S ribosomal protein S6 n=1 Tax=Beggiatoa alba B18LD RepID=I3CK39_9GAMM
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360, ECO:0000256|SAAS:SAAS00020539}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa
30S ribosomal protein S6
ar4r2_scaffold_835_8
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6803..7030
DNA (228bp) protein (76aa)
30S ribosomal protein S18 n=1 Tax=Beggiatoa sp. PS RepID=A7BWZ8_9GAMM
30S ribosomal protein S18
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;
ar4r2_scaffold_835_9
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7046..7495
DNA (450bp) protein (150aa)
50S ribosomal protein L9 n=1 Tax=Beggiatoa sp. PS RepID=A7BWZ9_9GAMM
50S ribosomal protein L9
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_835_10
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7575..8978
DNA (1404bp) protein (468aa)
Replicative DNA helicase n=1 Tax=Beggiatoa alba B18LD RepID=I3CK42_9GAMM
Replicative DNA helicase {ECO:0000313|EMBL:EIJ43985.1}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
replicative DNA helicase
ar4r2_scaffold_835_11
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8984..10057
DNA (1074bp) protein (358aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|SAAS:SAAS00021659}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|SAAS:SAAS00021659};; TaxID=40754 species="Bacteria; Proteoba
Alanine racemase n=1 Tax=Beggiatoa sp. PS RepID=A7BWJ8_9GAMM rbh
alanine racemase
ar4r2_scaffold_835_12
Arthrospira platensis, Arthrospira, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(10063..10551)
DNA (489bp) protein (163aa)
type II restriction endonuclease PvuII n=1 Tax=Synechococcus sp. PCC 7336 RepID=UPI00034D8141
Type II site-specific deoxyribonuclease {ECO:0000313|EMBL:EKD08191.1}; TaxID=459495 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Arthrospira.;" source="Arthrospira platens
type II restriction endonuclease PvuII
ar4r2_scaffold_835_13
Gallionella capsiferriformans, Gallionella, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10529..10771)
DNA (243bp) protein (81aa)
Helix-turn-helix domain protein n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SEM1_GALCS
helix-turn-helix domain-containing protein
Helix-turn-helix domain protein {ECO:0000313|EMBL:ADL56916.1}; TaxID=395494 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Gallionella.;" source="Gallionella c
ar4r2_scaffold_835_14
Richelia intracellularis, Richelia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

10826..11854
DNA (1029bp) protein (343aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=1164990 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Richelia.;" source="Richelia in
DNA methyltransferase n=1 Tax=Synechococcus sp. PCC 7336 RepID=UPI0003453D84
site-specific DNA methyltransferase
ar4r2_scaffold_835_15
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12044..12586
DNA (543bp) protein (181aa)
Smr protein/MutS2 n=1 Tax=Beggiatoa sp. PS RepID=A7BSE0_9GAMM
Smr protein/MutS2 {ECO:0000313|EMBL:EDN70545.1}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
Smr protein/MutS2
ar4r2_scaffold_835_16
unknown

Not on your lists

12937..13245
DNA (309bp) protein (103aa)

This feature has no annotations

ar4r2_scaffold_835_17
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13276..13668
DNA (393bp) protein (131aa)
Putative uncharacterized protein n=1 Tax=Beggiatoa sp. PS RepID=A7C0P7_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAP56952.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_835_18
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13696..14901
DNA (1206bp) protein (402aa)
Putative uncharacterized protein n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L1L4_HALNC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAP56953.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_835_19
Crinalium epipsammum, Crinalium, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

15028..15642
DNA (615bp) protein (205aa)
pyridoxamine 5'-phosphate oxidase (EC:1.4.3.5)
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate
Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 Tax=Crinalium epipsammum PCC 9333 RepID=K9W0F7_9CYAN
ar4r2_scaffold_835_20
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15685..16806
DNA (1122bp) protein (374aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00038266CE rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:BAP54834.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_835_21
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16908..18596
DNA (1689bp) protein (563aa)
Putative uncharacterized protein n=1 Tax=Beggiatoa sp. PS RepID=A7BXA4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EDN68830.1}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
hypothetical protein
ar4r2_scaffold_835_22
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18601..20304
DNA (1704bp) protein (568aa)
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB n=1 Tax=Beggiatoa alba B18LD RepID=I3CJX4_9GAMM rbh
secretion system protein E
Secretion system protein E {ECO:0000313|EMBL:BAP54720.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_835_23
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20731..22815
DNA (2085bp) protein (695aa)
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Beggiatoa alba B18LD RepID=I3CF72_9GAMM rbh
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein rbh
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:BAP56210.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae;
ar4r2_scaffold_835_24
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22824..23780
DNA (957bp) protein (319aa)
Formate hydrogenlyase subunit 4 n=1 Tax=Beggiatoa alba B18LD RepID=I3CG09_9GAMM rbh
formate hydrogenlyase subunit 4 rbh
Formate hydrogenlyase subunit 4 {ECO:0000313|EMBL:BAP55846.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica
ar4r2_scaffold_835_25
Thiorhodospira sibirica, Thiorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23856..24743
DNA (888bp) protein (296aa)
Protease HtpX {ECO:0000256|HAMAP-Rule:MF_00188}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_00188};; Heat shock protein HtpX {ECO:0000256|HAMAP-Rule:MF_00188}; TaxID=765914 species="Bacteria; Proteobacter
Protease HtpX n=1 Tax=Thiorhodospira sibirica ATCC 700588 RepID=G4E4G1_9GAMM rbh
heat shock protein HtpX
ar4r2_scaffold_835_26
unknown

Not on your lists

25005..25154
DNA (150bp) protein (50aa)

This feature has no annotations

Displaying 28 items

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