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ar4r2_scaffold_1105

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_1105_1
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..267
DNA (267bp) protein (89aa)
Putative signal-transduction protein containing cAMP-binding and CBS domains n=1 Tax=Beggiatoa alba B18LD RepID=I3CDL2_9GAMM
Putative signal-transduction protein containing cAMP-binding and CBS domains {ECO:0000313|EMBL:EIJ41705.1}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotric
cyclic nucleotide binding protein
ar4r2_scaffold_1105_2
Arcobacter butzleri, Arcobacter, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

267..479
DNA (213bp) protein (71aa)
dnaQ2; DNA polymerase III, epsilon subunit (EC:2.7.7.7)
DNA polymerase III, epsilon subunit {ECO:0000313|EMBL:AGR76834.1}; EC=2.7.7.7 {ECO:0000313|EMBL:AGR76834.1};; TaxID=1036172 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
DNA polymerase III, epsilon subunit n=3 Tax=Arcobacter butzleri RepID=A8ES54_ARCB4
ar4r2_scaffold_1105_3
RIFOXYD12_FULL_Sulfuricurvum_44_77_curated, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

484..792
DNA (309bp) protein (103aa)
Exonuclease RNase T and DNA polymerase III n=1 Tax=Sulfuricurvum kujiense (strain ATCC BAA-921 / DSM 16994 / JCM 11577 / YK-1) RepID=E4U1F2_SULKY
hypothetical protein Tax=RIFOXYD12_FULL_Sulfuricurvum_44_77_curated
exonuclease RNAase t and DNA polymerase III
ar4r2_scaffold_1105_4
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(822..2900)
DNA (2079bp) protein (693aa)
Cytotoxin SubA. Serine peptidase. MEROPS family S08X n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31F73_THICR
Uncharacterized protein {ECO:0000313|EMBL:KDN96709.1}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibri
peptidase S8/S53 subtilisin kexin sedolisin
ar4r2_scaffold_1105_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3017..4807
DNA (1791bp) protein (597aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037B11B5
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
ar4r2_scaffold_1105_6
Pseudomonas sp. 12M76_air, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4796..5557)
DNA (762bp) protein (254aa)
Adenosylcobinamide-GDP ribazoletransferase {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154501}; EC=2.7.8.26 {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154502};; Cobalamin sy
cobS; cobalamin synthase (EC:2.7.8.26)
cobalamin synthase n=1 Tax=Pseudomonas fluorescens RepID=UPI0003086217
ar4r2_scaffold_1105_7
Photobacterium damselae, Photobacterium, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5632..6000)
DNA (369bp) protein (123aa)
Holo-[acyl-carrier-protein] synthase {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237208}; Short=Holo-ACP synthase {ECO:0000256|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000256|HAMAP-Rule:MF
acpS; 4'-phosphopantetheinyl transferase (EC:2.7.8.7)
Holo-[acyl-carrier-protein] synthase n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0YVY7_LISDA
ar4r2_scaffold_1105_8
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6005..6727)
DNA (723bp) protein (241aa)
Pyridoxine 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088558}; Short=PNP synthase {ECO:0000256|HAMAP-Rule:MF_00279};; EC=2.6.99.2 {ECO:0000256|HAMAP-Rule:MF_00279,
pyridoxine 5'-phosphate synthase (EC:2.6.99.2)
pyridoxine 5''''-phosphate synthase n=1 Tax=Thiomicrospira arctica RepID=UPI00036BE0F0 rbh
ar4r2_scaffold_1105_9
Vibrio sp. JCM 18905, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6724..7398)
DNA (675bp) protein (225aa)
DNA repair protein recO (Recombination protein O) n=1 Tax=mine drainage metagenome RepID=E6QV66_9ZZZZ
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=1298600 species="Bacteria; Proteobacteria; Ga
ar4r2_scaffold_1105_10
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7422..8315)
DNA (894bp) protein (298aa)
hypothetical protein n=1 Tax=Thiomicrospira halophila RepID=UPI00036C5661 rbh
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;"
GTP-binding protein Era
ar4r2_scaffold_1105_11
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8308..9003)
DNA (696bp) protein (232aa)
rnc; ribonuclease III (EC:3.1.26.3)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule
Ribonuclease 3 n=1 Tax=Stenotrophomonas maltophilia D457 RepID=I0KRF7_STEMA
ar4r2_scaffold_1105_12
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9003..9761)
DNA (759bp) protein (253aa)
Signal peptidase I {ECO:0000256|RuleBase:RU003993}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU003993};; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiacea
peptidase S26A, signal peptidase I (EC:3.4.21.89)
signal peptidase I n=1 Tax=Thiomicrospira halophila RepID=UPI00035D00BA rbh
ar4r2_scaffold_1105_13
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9776..11584)
DNA (1809bp) protein (603aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP
Elongation factor 4 n=1 Tax=Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) RepID=F6DCS3_THICA rbh
GTP-binding protein LepA
ar4r2_scaffold_1105_14
Thiorhodospira sibirica, Thiorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11657..13090)
DNA (1434bp) protein (478aa)
Protease Do {ECO:0000313|EMBL:EGZ45057.1}; EC=3.4.21.108 {ECO:0000313|EMBL:EGZ45057.1};; Flags: Precursor;; TaxID=765914 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothior
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI00037E75EB rbh
serine peptidase
ar4r2_scaffold_1105_15
Thalassolituus oleivorans, Thalassolituus, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13105..13563)
DNA (459bp) protein (153aa)
AlgM gene product n=1 Tax=Thalassolituus oleivorans MIL-1 RepID=M5DPD8_9GAMM
protein AlgM
AlgM gene product {ECO:0000313|EMBL:CCU71353.1}; TaxID=1298593 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Thalassolituus.;" source="Thalassolituus oleivorans MIL-1.;"
ar4r2_scaffold_1105_16
Alishewanella agri, Alishewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13648..15255
DNA (1608bp) protein (536aa)
L-aspartate oxidase (EC:1.4.3.16)
L-aspartate oxidase {ECO:0000256|RuleBase:RU362049}; EC=1.4.3.16 {ECO:0000256|RuleBase:RU362049};; TaxID=1195246 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadace
L-aspartate oxidase n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CRC4_SIDLE
ar4r2_scaffold_1105_17
unknown

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comp(15305..15562)
DNA (258bp) protein (86aa)

This feature has no annotations

ar4r2_scaffold_1105_18
Shewanella sp. ANA-3, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15623..16612)
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=Shewanella sp. (strain ANA-3) RepID=A0KSL1_SHESA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABK46780.1}; TaxID=94122 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella sp. (strain
ar4r2_scaffold_1105_19
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16642..17895)
DNA (1254bp) protein (418aa)
gamma-glutamyl phosphate reductase; K00147 glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] Tax=CG_Thiomicrospira_01
gamma-glutamyl phosphate reductase (EC:1.2.1.41)
gamma-glutamyl phosphate reductase n=1 Tax=Gilvimarinus chinensis RepID=UPI00036F3887
ar4r2_scaffold_1105_20
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17951..18976)
DNA (1026bp) protein (342aa)
DNA polymerase III, delta subunit n=1 Tax=Beggiatoa alba B18LD RepID=I3CEJ0_9GAMM
DNA polymerase III, delta subunit {ECO:0000313|EMBL:EIJ42033.1}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba
DNA polymerase III subunit delta
ar4r2_scaffold_1105_21
unknown

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comp(18973..19521)
DNA (549bp) protein (183aa)
hypothetical protein
ar4r2_scaffold_1105_22
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(19545..22133)
DNA (2589bp) protein (863aa)
Leucine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000255|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00049}; Short=LeuRS {ECO:0000255|HAMAP-Rule:MF_
Leucine--tRNA ligase n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=SYL_THICR rbh
leucyl-tRNA synthetase
ar4r2_scaffold_1105_23
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22297..22692)
DNA (396bp) protein (132aa)
Cell division protein FtsB n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31G69_THICR
septum formation initiator
Cell division protein FtsB {ECO:0000256|HAMAP-Rule:MF_00599, ECO:0000256|SAAS:SAAS00014481}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Th
ar4r2_scaffold_1105_24
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22751..24025)
DNA (1275bp) protein (425aa)
enolase (EC:4.2.1.11)
Enolase {ECO:0000255|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000255|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000255|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000
Enolase n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=ENO_THICR rbh
ar4r2_scaffold_1105_25
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24085..24927)
DNA (843bp) protein (281aa)
2-dehydro-3-deoxyphosphooctonate aldolase {ECO:0000256|HAMAP-Rule:MF_00056, ECO:0000256|SAAS:SAAS00078566}; EC=2.5.1.55 {ECO:0000256|HAMAP-Rule:MF_00056, ECO:0000256|SAAS:SAAS00078538};; 3-deoxy-D-man
2-dehydro-3-deoxyphosphooctonate aldolase n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4DB38_9GAMM rbh
2-dehydro-3-deoxyphosphooctonate aldolase
ar4r2_scaffold_1105_26
Marinobacter sp. ES-1, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(24930..25124)
DNA (195bp) protein (65aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_0
CTP synthetase n=1 Tax=Aquaspirillum serpens RepID=UPI0003B6FFBF
pyrG; CTP synthase
Displaying 26 items

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