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ar4r2_scaffold_631

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_631_1
Acinetobacter rudis, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..141)
DNA (141bp) protein (47aa)
N-(5'-phosphoribosyl)anthranilate isomerase {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123216}; Short=PRAI {ECO:0000256|HAMAP-Rule:MF_00135};; EC=5.3.1.24 {ECO:0000256|HAMAP-Rule:MF_0013
phosphoribosylanthranilate isomerase (EC:5.3.1.24)
N-(5'-phosphoribosyl)anthranilate isomerase n=1 Tax=Acinetobacter rudis CIP 110305 RepID=S3NIC1_9GAMM
ar4r2_scaffold_631_2
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(138..929)
DNA (792bp) protein (264aa)
tRNA pseudouridine synthase A (EC:4.2.1.70)
tRNA pseudouridine synthase A {ECO:0000255|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000255|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000255|HAMAP-Rule:MF_00171}; tRNA pseudouridy
tRNA pseudouridine synthase A n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=TRUA_THICR rbh
ar4r2_scaffold_631_3
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(936..1958)
DNA (1023bp) protein (341aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:000
Aspartate-semialdehyde dehydrogenase n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D8G7_9GAMM
semialdehyde dehydrogenase
ar4r2_scaffold_631_4
Anaerofustis stercorihominis, Anaerofustis, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1994..2278)
DNA (285bp) protein (95aa)
Uncharacterized protein {ECO:0000313|EMBL:EDS73239.1}; TaxID=445971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Anaerofustis.;" source="Anaerofustis stercorihominis DSM 1
ar4r2_scaffold_631_5
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2338..3297)
DNA (960bp) protein (320aa)
Peptidase M23B n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31HH9_THICR
peptidase M23B Tax=CG_Thiomicrospira_01
peptidase M23B
ar4r2_scaffold_631_6
Thalassolituus oleivorans, Thalassolituus, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3320..4390)
DNA (1071bp) protein (357aa)
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|H
3-isopropylmalate dehydrogenase n=1 Tax=Microbulbifer agarilyticus RepID=UPI0002558309
ar4r2_scaffold_631_7
unknown

Not on your lists

4439..4579
DNA (141bp) protein (47aa)

This feature has no annotations

ar4r2_scaffold_631_8
RBG_16_Gammaproteobacteria_57_12_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4587..5750)
DNA (1164bp) protein (388aa)
Peptidase M23 n=1 Tax=endosymbiont of Riftia pachyptila (vent Ph05) RepID=G2DD15_9GAMM
Nucleoside:H+ symporter:Major facilitator superfamily; K05820 MFS transporter, PPP family, 3-phenylpropionic acid transporter Tax=RBG_16_Gammaproteobacteria_57_12_curated
transporter
ar4r2_scaffold_631_9
Hahella chejuensis, Hahella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5754..6854)
DNA (1101bp) protein (367aa)
chorismate synthase (EC:4.2.3.5)
Chorismate synthase {ECO:0000255|HAMAP-Rule:MF_00300}; Short=CS {ECO:0000255|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000255|HAMAP-Rule:MF_00300};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:
Chorismate synthase n=1 Tax=Hahella chejuensis (strain KCTC 2396) RepID=AROC_HAHCH
ar4r2_scaffold_631_10
Photobacterium profundum, Photobacterium, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6918..7457)
DNA (540bp) protein (180aa)
Putative AmpD protein n=1 Tax=Photobacterium profundum RepID=Q6LMH3_PHOPR
N-acetyl-anhydromuranmyl-L-alanine amidase
Putative AmpD protein {ECO:0000313|EMBL:CAG21504.1}; TaxID=74109 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium.;" source="Photobacterium profundum (
ar4r2_scaffold_631_11
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7517..8365
DNA (849bp) protein (283aa)
nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19)
Nicotinate-nucleotide pyrophosphorylase {ECO:0000313|EMBL:AHF01329.1}; EC=2.4.2.19 {ECO:0000313|EMBL:AHF01329.1};; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; P
Nicotinate-nucleotide pyrophosphorylase n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4DB56_9GAMM
ar4r2_scaffold_631_12
uncultured SUP05 cluster bacterium, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8358..10352
DNA (1995bp) protein (665aa)
Kef-type K+ transport system n=1 Tax=uncultured SUP05 cluster bacterium RepID=D1KD40_9GAMM rbh
Kef-type K+ transport system {ECO:0000313|EMBL:EEZ79966.1}; TaxID=655186 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; unclassified Oceanospirillales; SUP05 cluster; envir
potassium efflux system protein
ar4r2_scaffold_631_13
Thiorhodococcus drewsii, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10387..11133)
DNA (747bp) protein (249aa)
Multi-copper polyphenol oxidoreductase, laccase n=1 Tax=Thiorhodococcus drewsii AZ1 RepID=G2DYC3_9GAMM
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=765913 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus dre
hypothetical protein
ar4r2_scaffold_631_14
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11154..12119)
DNA (966bp) protein (322aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsi
Pseudouridine synthase n=1 Tax=Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) RepID=F6DC78_THICA
pseudouridine synthase
ar4r2_scaffold_631_15
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12196..12966
DNA (771bp) protein (257aa)
Outer membrane protein assembly factor BamD n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4DB59_9GAMM
competence protein ComL
Outer membrane protein assembly factor BamD {ECO:0000256|HAMAP-Rule:MF_00922}; Flags: Precursor;; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiacea
ar4r2_scaffold_631_16
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12996..14201
DNA (1206bp) protein (402aa)
RND transporter n=1 Tax=Methyloversatilis universalis RepID=UPI000372C3F6
RND family efflux transporter MFP subunit; K02005 HlyD family secretion protein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
RND family efflux transporter MFP subunit
ar4r2_scaffold_631_17
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14264..15427
DNA (1164bp) protein (388aa)
Uncharacterized protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VIC9_POLNA rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM35407.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthale
ar4r2_scaffold_631_18
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15431..16126
DNA (696bp) protein (232aa)
ABC transporter-like protein; K09810 lipoprotein-releasing system ATP-binding protein [EC:3.6.3.-] Tax=RBG_16_Betaproteobacteria_64_18_curated
peptide ABC transporter ATP-binding protein n=1 Tax=Methyloversatilis universalis RepID=UPI000363CA5A
ABC transporter-like protein
ar4r2_scaffold_631_19
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16369..18417
DNA (2049bp) protein (683aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae;
CheA signal transduction histidine kinase n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31F69_THICR rbh
CheA signal transduction histidine kinase
ar4r2_scaffold_631_20
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18428..18862
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI00035DCA68
Chemotaxis protein CheW {ECO:0000313|EMBL:KDN94805.1}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibri
putative CheW protein
ar4r2_scaffold_631_21
unknown

Not on your lists

18869..19090
DNA (222bp) protein (74aa)

This feature has no annotations

ar4r2_scaffold_631_22
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19083..19445
DNA (363bp) protein (121aa)
Fis family transcriptional regulator n=1 Tax=Thiomicrospira arctica RepID=UPI000380BE8E
Fis family transcriptional regulator
Fis family transcriptional regulator {ECO:0000313|EMBL:AHF01191.1}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" sour
ar4r2_scaffold_631_23
unknown

Not on your lists

comp(19603..19923)
DNA (321bp) protein (107aa)

This feature has no annotations

ar4r2_scaffold_631_24
Burkholderia andropogonis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20064..20540)
DNA (477bp) protein (159aa)
Putative outer membrane lipoprotein n=1 Tax=Bordetella avium (strain 197N) RepID=Q2KUW4_BORA1
Membrane protein {ECO:0000313|EMBL:KKB63022.1}; TaxID=28092 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia andropogonis.
slyB; outer membrane lipoprotein
ar4r2_scaffold_631_25
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

20774..20992
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D7B3_9GAMM
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075, ECO:0000313|EMBL:KIJ71719.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="T
translation initiation factor IF-1
ar4r2_scaffold_631_26
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21143..21391)
DNA (249bp) protein (83aa)
sulfurtransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI00035E859F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ98351.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" sou
ar4r2_scaffold_631_27
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21592..22959
DNA (1368bp) protein (456aa)
aldehyde dehydrogenase; K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16] Tax=CG_Thiomicrospira_01
Aldehyde Dehydrogenase n=1 Tax=Thioalkalivibrio thiocyanoxidans ARh 4 RepID=G4DFW5_9GAMM
succinate-semialdehyde dehdyrogenase
ar4r2_scaffold_631_28
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23012..23845)
DNA (834bp) protein (278aa)
Methyltransferase type 11 n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BZQ7_9GAMM
Methyltransferase type 11 {ECO:0000313|EMBL:EIJ36850.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 52
hypothetical protein
ar4r2_scaffold_631_29
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23965..24798
DNA (834bp) protein (278aa)
MotA/TolQ/ExbB proton channel n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31IR9_THICR
Flagellar motor protein MotA {ECO:0000313|EMBL:KDN95725.1}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogeno
MotA/TolQ/ExbB proton channel
ar4r2_scaffold_631_30
CG_Deferri_01, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

Not on your lists

24795..25520
DNA (726bp) protein (242aa)
OmpA/MotB family protein n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31IR8_THICR
OmpA/MotB protein
OmpA/MotB protein; K02557 chemotaxis protein MotB Tax=CG_Deferri_01
Displaying items 1-30 of 40 in total

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