ggKbase home page

ar4r2_scaffold_475

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_475_1
Thiocapsa marina, Thiocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..2060
DNA (2058bp) protein (686aa)
Ribosomal RNA large subunit methyltransferase K/L n=1 Tax=Thiocapsa marina 5811 RepID=F9UFF2_9GAMM
Ribosomal RNA large subunit methyltransferase K/L {ECO:0000256|HAMAP-Rule:MF_01858, ECO:0000256|SAAS:SAAS00183812}; TaxID=768671 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; C
putative RNA methylase
ar4r2_scaffold_475_2

Not on your lists

2132..2677
DNA (546bp) protein (182aa)
NlpC/P60 family domain protein n=1 Tax=uncultured organism RepID=M1PKB6_9ZZZZ
NlpC/P60 family domain protein {ECO:0000313|EMBL:AGF87237.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
NLP/P60 family lipoprotein
ar4r2_scaffold_475_3
BJP_IG2103_Dechloromonas_63_51, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2849..3124)
DNA (276bp) protein (92aa)
protein RnfH n=1 Tax=Azoarcus toluclasticus RepID=UPI0003725A09
hypothetical protein
Tax=BJP_IG2103_Dechloromonas_63_51
ar4r2_scaffold_475_4
RIFOXYD2_FULL_Sideroxydans_59_7_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3159..3836)
DNA (678bp) protein (226aa)
Electron transport complex protein RnfE n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CPG0_SIDLE rbh
electron transport complex, RnfABCDGE type, E subunit; K03613 electron transport complex protein RnfE Tax=RIFOXYD2_FULL_Sideroxydans_59_7_curated
electron transport complex, RnfABCDGE type, E subunit
ar4r2_scaffold_475_5
GWA2_Gallionellales_60_142_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3833..4468)
DNA (636bp) protein (212aa)
hypothetical protein n=1 Tax=Gallionella sp. SCGC AAA018-N21 RepID=UPI00036E6B7C
electron transport complex, RnfABCDGE type, G subunit; K03612 electron transport complex protein RnfG Tax=GWA2_Gallionellales_60_142_curated
electron transporter RnfG
ar4r2_scaffold_475_6
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4465..5541)
DNA (1077bp) protein (359aa)
Electron transport complex protein RnfD n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47FY7_DECAR rbh
electron transport complex, RnfABCDGE type, D subunit; K03614 electron transport complex protein RnfD Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
electron transport complex, RnfABCDGE type, D subunit
ar4r2_scaffold_475_7
BJP_IG2103_Rhodocyclales_63_50, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5538..7049)
DNA (1512bp) protein (504aa)
Electron transport complex protein RnfC n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) PF7_SIDLE">RepID=D5CPF7_SIDLE rbh
electron transport complex, RnfABCDGE type, C subunit
Tax=BJP_IG2103_Rhodocyclales_63_50
ar4r2_scaffold_475_8
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7052..7600)
DNA (549bp) protein (183aa)
Electron transport complex, RnfABCDGE type, B subunit n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) PF6_SIDLE">RepID=D5CPF6_SIDLE
Electron transport complex subunit B {ECO:0000256|HAMAP-Rule:MF_00463}; TaxID=1188319 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="F
electron transport complex, RnfABCDGE type, B subunit
ar4r2_scaffold_475_9
GWA2_Gallionellales_59_43_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7614..8195)
DNA (582bp) protein (194aa)
Electron transport complex protein RnfA n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RRB8_ACCPU
RnfABCDGE type electron transport complex subunit A; K03617 electron transport complex protein RnfA Tax=GWA2_Gallionellales_59_43_curated
RnfABCDGE type electron transport complex subunit A
ar4r2_scaffold_475_10
Sideroxydans lithotrophicus, Sideroxydans, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9176..10747
DNA (1572bp) protein (524aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=580332 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Sid
PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) PF4_SIDLE">RepID=D5CPF4_SIDLE rbh
PAS/PAC sensor signal transduction histidine kinase
ar4r2_scaffold_475_11
GWA2_Gallionellales_60_142_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10744..12315
DNA (1572bp) protein (524aa)
Nif-specific regulatory protein n=1 Tax=Thioflavicoccus mobilis 8321 RepID=L0GVS6_9GAMM
NifA family transcriptional regulator; K02584 Nif-specific regulatory protein Tax=GWA2_Gallionellales_60_142_curated
Nif-specific regulatory protein
ar4r2_scaffold_475_12
Teredinibacter turnerae, Teredinibacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12343..12768
DNA (426bp) protein (142aa)
hemerythrin n=1 Tax=Teredinibacter turnerae RepID=UPI0003703BF2
hemerythrin metal-binding domain-containing protein
Hemerythrin metal-binding domain protein {ECO:0000313|EMBL:ACR12223.1}; TaxID=377629 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadales genera incertae sedis; Ter
ar4r2_scaffold_475_13
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12788..14131)
DNA (1344bp) protein (448aa)
RNA-directed DNA polymerase (Reverse transcriptase) n=1 Tax=Burkholderia phytofirmans (strain DSM 17436 / PsJN) RepID=B2SZ91_BURPP rbh
reverse transcriptase family protein
Reverse transcriptase family protein {ECO:0000313|EMBL:AJZ58628.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkh
ar4r2_scaffold_475_14
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14502..17327
DNA (2826bp) protein (942aa)
Uncharacterized protein n=4 Tax=Escherichia coli RepID=T6XC55_ECOLX rbh
Helicase Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
DEAD/DEAH box helicase family protein
ar4r2_scaffold_475_15
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17338..18615
DNA (1278bp) protein (426aa)
hypothetical protein n=1 Tax=Marinobacter lipolyticus RepID=UPI00037BB2E0 rbh
putative transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
Transcriptional regulator with HTH domain
ar4r2_scaffold_475_16
Alcaligenes sp. EGD-AK7, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18623..20296
DNA (1674bp) protein (558aa)
DNA methylase N-4 n=1 Tax=Pseudomonas aeruginosa RepID=UPI000304C64F rbh
DNA methyltransferase {ECO:0000313|EMBL:ERI33031.1}; TaxID=1386079 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes sp. EGD-AK
DNA methylase N-4/N-6 domain-containing protein
ar4r2_scaffold_475_17
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20289..23099
DNA (2811bp) protein (937aa)
Type III restriction enzyme, res subunit n=1 Tax=Escherichia coli P0302308.4 RepID=N3I7X7_ECOLX rbh
PstII restriction-modification enzyme Res subunit Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
PstII restriction-modification enzyme Res subunit
ar4r2_scaffold_475_18
GWF2_Sideroxydans_59_14_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23286..24794
DNA (1509bp) protein (503aa)
FeMo cofactor biosynthesis protein NifB n=1 Tax=Methylovulum miyakonense RepID=UPI00037E35CE rbh
nitrogenase cofactor biosynthesis protein NifB; K02585 nitrogen fixation protein NifB Tax=GWF2_Sideroxydans_59_14_curated
nitrogenase cofactor biosynthesis protein NifB
ar4r2_scaffold_475_19
Sideroxydans lithotrophicus, Sideroxydans, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24808..25092
DNA (285bp) protein (95aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CPD4_SIDLE
4Fe-4S ferredoxin iron-sulfur binding domain protein
4Fe-4S ferredoxin iron-sulfur binding domain protein {ECO:0000313|EMBL:ADE11075.1}; TaxID=580332 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Sideroxydans.;"
ar4r2_scaffold_475_20
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25089..25517
DNA (429bp) protein (143aa)
Uncharacterized 15.7 kDa protein in draG 3'region n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JB75_HYPSM
hypothetical protein
Uncharacterized 15.7 kDa protein in draG 3'region {ECO:0000313|EMBL:CCB66850.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;"
ar4r2_scaffold_475_21
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25520..26809
DNA (1290bp) protein (430aa)
Probable type A flavoprotein n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K2T8_AZOSB rbh
fprA; type A flavoprotein
Probable type A flavoprotein {ECO:0000313|EMBL:CAL93143.1}; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain B
ar4r2_scaffold_475_22
BJP_IG2103_Rhodocyclales_63_50, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26834..27121
DNA (288bp) protein (96aa)
Probable ferredoxin IV n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K2T9_AZOSB
fdxC; ferredoxin IV
Tax=BJP_IG2103_Rhodocyclales_63_50
ar4r2_scaffold_475_23
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27162..27521
DNA (360bp) protein (120aa)
Ferredoxin n=1 Tax=Thiorhodospira sibirica ATCC 700588 RepID=G4E757_9GAMM
ferredoxin
Ferredoxin {ECO:0000313|EMBL:BAP57423.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_475_24
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27540..28166
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=uncultured Thiohalocapsa sp. PB-PSB1 RepID=V4JYV5_9GAMM
NifQ family protein
NifQ family protein {ECO:0000313|EMBL:BAP57422.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_475_25
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28163..29062
DNA (900bp) protein (300aa)
ADP-ribosyl-(dinitrogen reductase) hydrolase (EC:3.2.2.24); K05521 ADP-ribosylglycohydrolase [EC:3.2.-.-] Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
ADP-ribosyl-(Dinitrogen reductase) hydrolase n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RRE7_ACCPU rbh
ADP-ribosyl-(dinitrogen reductase) hydrolase
ar4r2_scaffold_475_26

Not on your lists

29257..29508
DNA (252bp) protein (84aa)
Antitoxin of the YoeB-YefM toxin-antitoxin system n=1 Tax=mine drainage metagenome RepID=E6QQB2_9ZZZZ
Antitoxin of the YoeB-YefM toxin-antitoxin system {ECO:0000313|EMBL:CBI09433.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;
prevent-host-death protein
ar4r2_scaffold_475_27

Not on your lists

29505..29759
DNA (255bp) protein (85aa)
Toxin of the YoeB-YefM toxin-antitoxin system n=1 Tax=mine drainage metagenome RepID=E6QQB3_9ZZZZ
Toxin of the YoeB-YefM toxin-antitoxin system {ECO:0000313|EMBL:CBI09434.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
addiction module antitoxin
ar4r2_scaffold_475_28
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29832..30311)
DNA (480bp) protein (160aa)
GCN5-related N-acetyltransferase n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L1B6_HALNC
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ACX96489.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halo
ar4r2_scaffold_475_29
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30408..30800)
DNA (393bp) protein (131aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI000361F36A
Uncharacterized protein {ECO:0000313|EMBL:CDH46930.1}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contend
Transcriptional regulator, CopG family
ar4r2_scaffold_475_30
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30810..30992)
DNA (183bp) protein (61aa)
hypothetical protein n=1 Tax=Methylomicrobium buryatense RepID=UPI0003483379
Uncharacterized protein {ECO:0000313|EMBL:CDI04060.1}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competib
periplasmic or secreted lipoprotein
Displaying items 1-30 of 37 in total

View Taxonomy