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ar4r2_scaffold_540

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_540_1
GWA2_CPR1_42_17, CPR1, Bacteria

Not on your lists

116..496
DNA (381bp) protein (127aa)
hypothetical protein
seg 112..125 id=983367 bin=RAAC1_SR1 species=RAAC1_SR1 genus=RAAC1_SR1 taxon_order=RAAC1_SR1 taxon_class=RAAC1_SR1 phylum=SR1 tax=RAAC1_SR1 organism_group=SR1
Uncharacterized protein {ECO:0000313|EMBL:KKS41829.1}; TaxID=1618341 species="Bacteria; candidate division CPR1.;" source="candidate division CPR1 bacterium GW2011_GWA2_42_17.;"
ar4r2_scaffold_540_2
ACD80, ACD80, ACD80, ACD80, SR1, Bacteria

Not on your lists

comp(812..1033)
DNA (222bp) protein (74aa)
GIY-YIG 1..66 id=132143 bin=ACD80 species=ACD80 genus=ACD80 taxon_order=ACD80 taxon_class=ACD80 phylum=SR1 tax=ACD80 organism_group=SR1
GIY-YIG 1..66 id=132143 bin=ACD80 species=ACD80 genus=ACD80 taxon_order=ACD80 taxon_class=ACD80 phylum=SR1 tax=ACD80 organism_group=SR1
ar4r2_scaffold_540_trna_1
unknown

Not on your lists

comp(1110..1182)
DNA (73bp)
transferRNA
ar4r2_scaffold_540_3
ACD80, SR1, Bacteria

Not on your lists


comp(1246..1434)
DNA (189bp) protein (63aa)
50S ribosomal protein L28 n=1 Tax=uncultured bacterium (gcode 4) RepID=K1XIQ8_9BACT
Ribosomal_L28 3..58 Tax=ACD80
hypothetical protein
ar4r2_scaffold_540_4
unknown

Not on your lists


comp(1477..2115)
DNA (639bp) protein (213aa)
50S ribosomal protein L25 n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KTC0_9BACT id=132676 bin=ACD80 species=candidate division TM7 genomosp. GTL1 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Candidatus Saccharibacteria tax=ACD80 organism_group=SR1 rbh
50S ribosomal protein L25 n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KTC0_9BACT Tax=ACD80
hypothetical protein
ar4r2_scaffold_540_5
unknown

Not on your lists


comp(2149..2586)
DNA (438bp) protein (146aa)
hypothetical protein n=1 Tax=candidate division OP11 bacterium UW 659-4-B07 RepID=UPI000374503A
50S ribosomal protein L19 n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZUU0_9BACT Tax=ACD80
hypothetical protein
ar4r2_scaffold_540_6
ACD80, SR1, Bacteria

Not on your lists

comp(2615..2758)
DNA (144bp) protein (48aa)
hypothetical protein
seg 35..47 id=132665 bin=ACD80 species=ACD80 genus=ACD80 taxon_order=ACD80 taxon_class=ACD80 phylum=SR1 tax=ACD80 organism_group=SR1
seg 35..47 Tax=ACD80
ar4r2_scaffold_540_7
ACD80, SR1, Bacteria

Not on your lists

comp(2790..3041)
DNA (252bp) protein (84aa)
hypothetical protein n=1 Tax=candidate division OP11 bacterium UW 659-4-B07 RepID=UPI00037BEFDF
hypothetical protein
hypothetical protein Tax=ACD80
ar4r2_scaffold_540_8

Not on your lists


comp(3111..3602)
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=candidate division OP11 bacterium UW 659-4-B07 RepID=UPI000378EE1B
rpsG; 30S ribosomal protein S7
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ar4r2_scaffold_540_9
RIFOXYD1_FULL_OD1_Magasanikbacteria_40_23_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists


comp(3642..4067)
DNA (426bp) protein (142aa)
UPI0003D00E0D related cluster n=1 Tax=unknown RepID=UPI0003D00E0D
rpsL; 30S ribosomal protein S12
rpsL; 30S ribosomal protein S12; K02950 small subunit ribosomal protein S12 Tax=RIFOXYD1_FULL_OD1_Magasanikbacteria_40_23_curated
ar4r2_scaffold_540_10
GWF2_Bacteroidetes_38_335_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4476..6539)
DNA (2064bp) protein (688aa)
hypothetical protein n=1 Tax=candidate division OP11 bacterium UW 659-4-B07 RepID=UPI00037254A5 rbh
hypothetical protein Tax=GWF2_Bacteroidetes_38_335_curated
PDK repeat-containing protein
ar4r2_scaffold_540_11
Hymenobacter swuensis, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(6589..8085)
DNA (1497bp) protein (499aa)
hypothetical protein n=1 Tax=candidate division OP11 bacterium UW 659-4-B07 RepID=UPI00037FC8BB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHJ97026.1}; TaxID=1227739 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter swuensis DY53.;"
ar4r2_scaffold_540_12
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8116..8898)
DNA (783bp) protein (261aa)
hypothetical protein n=1 Tax=candidate division OP11 bacterium UW 659-4-B07 RepID=UPI0003627D6A
hypothetical protein
Conserved repeat domain protein {ECO:0000313|EMBL:ACU04797.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacte
ar4r2_scaffold_540_13
ACD80, SR1, Bacteria

Not on your lists

comp(9549..11813)
DNA (2265bp) protein (755aa)
Uncharacterized protein (Fragment) n=1 Tax=uncultured bacterium (gcode 4) RepID=K1XHZ4_9BACT
seg 66..79 Tax=ACD80
hypothetical protein
ar4r2_scaffold_540_14
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

Not on your lists

comp(12155..13441)
DNA (1287bp) protein (429aa)
b-glycosidase (EC:3.2.1.-)
hypothetical protein n=1 Tax=candidate division OP11 bacterium UW 659-4-B07 RepID=UPI00037254A5
Tax=BJP_IG2103_Bacteroidetes_41_9
ar4r2_scaffold_540_15
RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, SR1, Bacteria

Not on your lists

comp(13626..17363)
DNA (3738bp) protein (1246aa)
hypothetical protein
transmembrane_regions 5..24 id=982189 bin=RAAC1_SR1 species=RAAC1_SR1 genus=RAAC1_SR1 taxon_order=RAAC1_SR1 taxon_class=RAAC1_SR1 phylum=SR1 tax=RAAC1_SR1 organism_group=SR1 rbh
transmembrane_regions 5..24 id=982189 bin=RAAC1_SR1 species=RAAC1_SR1 genus=RAAC1_SR1 taxon_order=RAAC1_SR1 taxon_class=RAAC1_SR1 phylum=SR1 tax=RAAC1_SR1 organism_group=SR1
ar4r2_scaffold_540_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17458..20109)
DNA (2652bp) protein (884aa)
hypothetical protein n=1 Tax=candidate division OP11 bacterium UW 659-4-B07 RepID=UPI0003817839
hypothetical protein
Conserved repeat domain protein {ECO:0000313|EMBL:EQH99527.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridi
ar4r2_scaffold_540_17
unknown

Not on your lists

comp(20196..21254)
DNA (1059bp) protein (353aa)
hypothetical protein
ar4r2_scaffold_540_18
ACD80, SR1, Bacteria

Not on your lists

comp(21313..26385)
DNA (5073bp) protein (1691aa)
Uncharacterized protein (Fragment) n=1 Tax=uncultured bacterium (gcode 4) RepID=K1XJJ3_9BACT rbh
coiled-coil 1360..1381 Tax=ACD80
ar4r2_scaffold_540_19
Microscilla marina, Microscilla, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

27212..28543
DNA (1332bp) protein (444aa)
Peptide ABC transporter, periplasmic peptide-binding protein n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZJW9_9BACT id=983308 bin=RAAC1_SR1 species=Microscilla marina genus=Microscilla taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=RAAC1_SR1 organism_group=SR1 rbh
Peptide ABC transporter, periplasmic peptide-binding protein
Uncharacterized protein {ECO:0000313|EMBL:EAY29421.1}; TaxID=313606 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Microscilla.;" source="Microscilla marina ATCC 23134.;"
ar4r2_scaffold_540_20
RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, SR1, Bacteria

Not on your lists

28553..29566
DNA (1014bp) protein (338aa)
phage recombination protein Bet id=983306 bin=RAAC1_SR1 species=RAAC1_SR1 genus=RAAC1_SR1 taxon_order=RAAC1_SR1 taxon_class=RAAC1_SR1 phylum=SR1 tax=RAAC1_SR1 organism_group=SR1 rbh
phage recombination protein Bet id=983306 bin=RAAC1_SR1 species=RAAC1_SR1 genus=RAAC1_SR1 taxon_order=RAAC1_SR1 taxon_class=RAAC1_SR1 phylum=SR1 tax=RAAC1_SR1 organism_group=SR1
phage recombination protein Bet
ar4r2_scaffold_540_21
RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, SR1, Bacteria

Not on your lists

29669..30694
DNA (1026bp) protein (342aa)
hypothetical protein
hypothetical protein; K07465 putative RecB family exonuclease id=983305 bin=RAAC1_SR1 species=RAAC1_SR1 genus=RAAC1_SR1 taxon_order=RAAC1_SR1 taxon_class=RAAC1_SR1 phylum=SR1 tax=RAAC1_SR1 organism_group=SR1 rbh
hypothetical protein; K07465 putative RecB family exonuclease id=983305 bin=RAAC1_SR1 species=RAAC1_SR1 genus=RAAC1_SR1 taxon_order=RAAC1_SR1 taxon_class=RAAC1_SR1 phylum=SR1 tax=RAAC1_SR1 organism_group=SR1
ar4r2_scaffold_540_22
unknown

Not on your lists

31269..31559
DNA (291bp) protein (97aa)

This feature has no annotations

ar4r2_scaffold_540_23
RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, SR1, Bacteria

Not on your lists

31682..31891
DNA (210bp) protein (70aa)
hypothetical protein
coiled-coil 46..67 id=983301 bin=RAAC1_SR1 species=RAAC1_SR1 genus=RAAC1_SR1 taxon_order=RAAC1_SR1 taxon_class=RAAC1_SR1 phylum=SR1 tax=RAAC1_SR1 organism_group=SR1
coiled-coil 46..67 id=983301 bin=RAAC1_SR1 species=RAAC1_SR1 genus=RAAC1_SR1 taxon_order=RAAC1_SR1 taxon_class=RAAC1_SR1 phylum=SR1 tax=RAAC1_SR1 organism_group=SR1
Displaying 24 items

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