ggKbase home page

ar4r2_scaffold_345

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_345_1
BJP_IG2103_Bacteroidetes_37_22, Bacteroidetes, Bacteria

Not on your lists

comp(130..999)
DNA (870bp) protein (290aa)
Outer membrane protein Omp28 id=4232880 bin=GWF2_Bacteroidetes_33_38 species=Owenweeksia hongkongensis genus=Owenweeksia taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_33_38 organism_group=Bacteroidetes organism_desc=a699
Tax=BJP_IG2103_Bacteroidetes_37_22
ar4r2_scaffold_345_2
GWF2_Bacteroidetes_33_38_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1017..2663)
DNA (1647bp) protein (549aa)
hypothetical protein Tax=GWF2_Bacteroidetes_33_38_curated
Putative uncharacterized protein id=4852757 bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes
hypothetical protein
ar4r2_scaffold_345_3
GWF2_Bacteroidetes_35_48_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2679..3188)
DNA (510bp) protein (170aa)
Thiol-disulfide isomerase-like thioredoxin id=4519006 bin=GWF2_Bacteroidetes_35_48 species=Owenweeksia hongkongensis genus=Owenweeksia taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_35_48 organism_group=Bacteroidetes organism_desc=a81
thiol-disulfide isomerase-like thioredoxin Tax=GWF2_Bacteroidetes_35_48_curated
thiol-disulfide isomerase-like thioredoxin
ar4r2_scaffold_345_4

Not on your lists

3520..4212
DNA (693bp) protein (231aa)
Marine sediment metagenome DNA, contig: S06H3_L07364 {ECO:0000313|EMBL:GAI11594.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
ar4r2_scaffold_345_5
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

comp(4235..5272)
DNA (1038bp) protein (346aa)
pyrD; dihydroorotate dehydrogenase 2 (EC:1.3.3.1); K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1] Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
dihydroorotate dehydrogenase (EC:1.3.98.1)
Dihydroorotate dehydrogenase (quinone) n=1 Tax=Marivirga tractuosa (strain ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB 1408 / VKM B-1430 / H-43) RepID=E4TNN7_MARTH
ar4r2_scaffold_345_6
BJP_IG2069_Bacteroidetes_43_11, Bacteroidetes, Bacteria

Not on your lists

5582..5878
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1Z0N4_9BACT
hypothetical protein
Tax=BJP_IG2069_Bacteroidetes_43_11
ar4r2_scaffold_345_7
RBG_13_Bacteroidetes_42_15_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5888..6181
DNA (294bp) protein (98aa)
hypothetical protein n=1 Tax=Thermophagus xiamenensis RepID=UPI000255D728
hypothetical protein Tax=RBG_13_Bacteroidetes_42_15_curated
Cell division protein ZapA
ar4r2_scaffold_345_8
GWF2_Bacteroidetes_38_335_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6464..8002
DNA (1539bp) protein (513aa)
phosphodiesterase id=3854319 bin=GWF2_Bacteroidetes_38_335 species=unknown genus=unknown taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11 rbh
2,3 cyclic-nucleotide 2-phosphodiesterase; K06950 uncharacterized protein Tax=GWF2_Bacteroidetes_38_335_curated
ribonuclease
ar4r2_scaffold_345_9
RBG_19FT_COMBO_Bacteroidetes_42_10_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8094..8408)
DNA (315bp) protein (105aa)
hypothetical protein Tax=RBG_19FT_COMBO_Bacteroidetes_42_10_curated
Putative uncharacterized protein id=4441265 bin=GWF2_Bacteroidetes_49_14 species=Solitalea canadensis genus=Solitalea taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_49_14 organism_group=Bacteroidetes organism_desc=Good (not ab)
hypothetical protein
ar4r2_scaffold_345_10
GWD2_Bacteroidetes_33_33_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8420..12694)
DNA (4275bp) protein (1425aa)
rpoC; putative DNA-directed RNA polymerase beta' chain; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] Tax=GWD2_Bacteroidetes_33_33_curated
rpoC; putative DNA-directed RNA polymerase beta' chain (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta'''' id=1745566 bin=GWB2_Bacteroidetes_32_14 species=unknown genus=unknown taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWB2_Bacteroidetes_32_14 organism_group=Bacteroidetes organism_desc=a47 rbh
ar4r2_scaffold_345_11
GWF2_Bacteroidetes_38_335_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12757..16569)
DNA (3813bp) protein (1271aa)
DNA-directed RNA polymerase subunit beta; K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] Tax=GWF2_Bacteroidetes_38_335_curated
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta id=2594483 bin=GWF2_Bacteroidetes_38_335 species=unknown genus=unknown taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
ar4r2_scaffold_345_12
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16669..17043)
DNA (375bp) protein (125aa)
50S ribosomal protein L7/L12 id=1984614 bin=GWE2_Bacteroidetes_40_63 species=Gillisia marina genus=Gillisia taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_40_63 organism_group=Bacteroidetes organism_desc=Good
50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12 Tax=GWE2_Bacteroidetes_40_63_curated
50S ribosomal protein L12
ar4r2_scaffold_345_13
RBG_13_Bacteroidetes_42_15_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(17070..17594)
DNA (525bp) protein (175aa)
LSU ribosomal protein L10p (P0) RplJ Tax=RBG_13_Bacteroidetes_42_15_curated
50S ribosomal protein L10 id=4414345 bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes
50S ribosomal protein L10
ar4r2_scaffold_345_14
Riemerella anatipestifer, Riemerella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(17606..18301)
DNA (696bp) protein (232aa)
50S ribosomal protein L1 n=1 Tax=Riemerella columbina RepID=UPI0003757786
50S ribosomal protein L1
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=693978 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Riemerella.;" source="Riemerella anatipe
ar4r2_scaffold_345_15
CG_Bacteroid_01, Bacteroidetes, Bacteria

Not on your lists


comp(18313..18756)
DNA (444bp) protein (148aa)
rplK; 50S ribosomal protein L11; K02867 large subunit ribosomal protein L11 Tax=CG_Bacteroid_01
50S ribosomal protein L11 id=3914434 bin=GWF2_Bacteroidetes_33_38 species=unknown genus=unknown taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_33_38 organism_group=Bacteroidetes organism_desc=a699
50S ribosomal protein L11
ar4r2_scaffold_345_16
GWF2_Bacteroidetes_38_335_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18784..19332)
DNA (549bp) protein (183aa)
Transcription antitermination protein nusG id=2594500 bin=GWF2_Bacteroidetes_38_335 species=unknown genus=unknown taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
transcription termination/antitermination factor NusG; K02601 transcriptional antiterminator NusG Tax=GWF2_Bacteroidetes_38_335_curated
transcription antitermination protein nusG
ar4r2_scaffold_345_trna_6
unknown

Not on your lists

comp(19556..19628)
DNA (73bp)
transferRNA
ar4r2_scaffold_345_17
Odoribacter laneus, Odoribacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19667..20854)
DNA (1188bp) protein (396aa)
Elongation factor Tu n=2 Tax=Odoribacter RepID=H1DL31_9PORP rbh
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=742817 species="Bacteria; Bacteroidetes; Bacteroidia; Bacte
translation elongation factor Tu
ar4r2_scaffold_345_trna_5
unknown

Not on your lists

comp(20903..20974)
DNA (72bp)
transferRNA
ar4r2_scaffold_345_18
unknown

Not on your lists

20911..21306
DNA (396bp) protein (132aa)

This feature has no annotations

ar4r2_scaffold_345_trna_4
unknown

Not on your lists

comp(20992..21064)
DNA (73bp)
transferRNA
ar4r2_scaffold_345_trna_3
unknown

Not on your lists

comp(21073..21154)
DNA (82bp)
transferRNA
ar4r2_scaffold_345_trna_2
unknown

Not on your lists

comp(21177..21250)
DNA (74bp)
transferRNA
ar4r2_scaffold_345_19
GWF2_Bacteroidetes_33_38_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21358..21648)
DNA (291bp) protein (97aa)
phage integrase family site specific recombinase id=3914421 bin=GWF2_Bacteroidetes_33_38 species=Anaerophaga thermohalophila genus=Anaerophaga taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_33_38 organism_group=Bacteroidetes organism_desc=a699
ribosomal subunit interface protein; K05808 putative sigma-54 modulation protein Tax=GWF2_Bacteroidetes_33_38_curated
ribosomal subunit interface protein
ar4r2_scaffold_345_20
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

comp(21660..22535)
DNA (876bp) protein (292aa)
Tyrosine recombinase XerC n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KP27_SOLCM rbh
site-specific recombinase XerD Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
site-specific recombinase XerD
ar4r2_scaffold_345_21
BJP_IG2103_Bacteroidetes_37_22, Bacteroidetes, Bacteria

Not on your lists

comp(22658..22849)
DNA (192bp) protein (64aa)
30S ribosomal protein S21 id=1775665 bin=GWE2_Bacteroidetes_42_24 species=Tannerella forsythia genus=Tannerella taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_24 organism_group=Bacteroidetes
30S ribosomal protein S21
Tax=BJP_IG2103_Bacteroidetes_37_22
ar4r2_scaffold_345_22
GWD2_Bacteroidetes_33_33_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23000..23845
DNA (846bp) protein (282aa)
drug/metabolite transporter permease Tax=GWD2_Bacteroidetes_33_33_curated
Drug/metabolite transporter permease id=1745262 bin=GWD2_Bacteroidetes_33_33 species=Thermococcus barophilus genus=Thermococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota tax=GWD2_Bacteroidetes_33_33 organism_group=Bacteroidetes organism_desc=a152
hypothetical protein
ar4r2_scaffold_345_23
GWA2_Bacteroidetes_32_17_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23908..24645
DNA (738bp) protein (246aa)
hypothetical protein id=4414264 bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes
hypothetical protein Tax=GWA2_Bacteroidetes_32_17_curated
ar4r2_scaffold_345_24
GWD2_Bacteroidetes_33_33_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

24649..25344
DNA (696bp) protein (232aa)
HAD superfamily (Subfamily IA) hydrolase, TIGR02254 id=1995122 bin=GWD2_Bacteroidetes_33_33 species=Fulvivirga imtechensis genus=Fulvivirga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_33_33 organism_group=Bacteroidetes organism_desc=a152
HAD hydrolase, subfamily IA Tax=GWD2_Bacteroidetes_33_33_curated
had superfamily (subfamily ia) hydrolase, tigr02254
ar4r2_scaffold_345_25
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

25422..27482
DNA (2061bp) protein (687aa)
hypothetical protein
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
CHU large protein; uncharacterized id=4892389 bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes
Displaying items 1-30 of 37 in total

View Taxonomy