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ar4r2_scaffold_667

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_667_1
GWF2_Bacteroidetes_38_335_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(1..2022)
DNA (2022bp) protein (674aa)
OmpA family outer membrane protein id=4128509 bin=GWF2_Bacteroidetes_38_335 species=Thermophagus xiamenensis genus=Thermophagus taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11 rbh
ompA; OmpA family peptidoglycan-associated lipoprotein Tax=GWF2_Bacteroidetes_38_335_curated
tpn50; OmpA family outer membrane protein
ar4r2_scaffold_667_2
GWF2_Bacteroidetes_38_335_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2140..4875)
DNA (2736bp) protein (912aa)
Subtilisin-like serine protease id=3454820 bin=GWF2_Bacteroidetes_38_335 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11 rbh
Subtilisin-like serine protease Tax=GWF2_Bacteroidetes_38_335_curated
subtilisin-like serine protease
ar4r2_scaffold_667_3
GWF2_Bacteroidetes_33_38_curated, Bacteroidia, Bacteroidetes, Bacteria

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4975..5391
DNA (417bp) protein (139aa)
two component transcriptional regulator, lyttr family protein id=4247558 bin=GWF2_Bacteroidetes_33_38 species=unknown genus=unknown taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_33_38 organism_group=Bacteroidetes organism_desc=a699
response regulator of the LytR/AlgR family Tax=GWF2_Bacteroidetes_33_38_curated
response regulator of the LytR/AlgR family
ar4r2_scaffold_667_4
GWA2_Bacteroidetes_32_17_curated, Bacteroidia, Bacteroidetes, Bacteria

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5391..5690
DNA (300bp) protein (100aa)
response regulator of the LytR/AlgR family Tax=GWA2_Bacteroidetes_32_17_curated
two component transcriptional regulator, lyttr family protein id=1811943 bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes
response regulator of the LytR/AlgR family
ar4r2_scaffold_667_5
GWA2_Bacteroidetes_31_9b_curated, Bacteroidia, Bacteroidetes, Bacteria

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5860..6951
DNA (1092bp) protein (364aa)
ornithine/acetylornithine aminotransferase Tax=GWA2_Bacteroidetes_31_9b_curated
Ornithine/acetylornithine aminotransferase id=4247556 bin=GWF2_Bacteroidetes_33_38 species=Owenweeksia hongkongensis genus=Owenweeksia taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_33_38 organism_group=Bacteroidetes organism_desc=a699 rbh
ornithine/acetylornithine aminotransferase
ar4r2_scaffold_667_6
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(6948..9797)
DNA (2850bp) protein (950aa)
Excinuclease ABC, A subunit id=4945166 bin=GWA2_Bacteroidetes_42_15 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_42_15 organism_group=Bacteroidetes rbh
Excinuclease ABC subunit A Tax=GWE2_Bacteroidetes_42_39_curated
excinuclease ABC subunit A
ar4r2_scaffold_667_7
GWF2_Bacteroidetes_33_38_curated, Bacteroidia, Bacteroidetes, Bacteria

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10284..11009
DNA (726bp) protein (242aa)
Sulfate-transporting ATPase id=3747233 bin=GWF2_Bacteroidetes_33_38 species=unknown genus=unknown taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_33_38 organism_group=Bacteroidetes organism_desc=a699 rbh
hypothetical protein Tax=GWF2_Bacteroidetes_33_38_curated
ABC transporter ATPase
ar4r2_scaffold_667_8

Not on your lists

11013..11354
DNA (342bp) protein (114aa)
Uncharacterized protein {ECO:0000313|EMBL:KKK79573.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
MmcQ id=4182498 bin=GWF2_Bacteroidetes_33_16 species=Microscilla marina genus=Microscilla taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_33_16 organism_group=Bacteroidetes organism_desc=Good
hypothetical protein
ar4r2_scaffold_667_9
GWF2_Bacteroidetes_33_38_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11356..11934
DNA (579bp) protein (193aa)
hypothetical membrane protein id=3847285 bin=GWF2_Bacteroidetes_33_38 species=Marinilabilia salmonicolor genus=Marinilabilia taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_33_38 organism_group=Bacteroidetes organism_desc=a699
hypothetical protein Tax=GWF2_Bacteroidetes_33_38_curated
membrane protein
ar4r2_scaffold_667_10
GWF2_Bacteroidetes_41_31_curated, Bacteroidia, Bacteroidetes, Bacteria

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11936..12535
DNA (600bp) protein (200aa)
rnhB; ribonuclease HII (EC:3.1.26.4); K03470 ribonuclease HII [EC:3.1.26.4] Tax=GWF2_Bacteroidetes_41_31_curated
Ribonuclease HII id=3956151 bin=GWF2_Bacteroidetes_41_31 species=Tannerella sp. 6_1_58FAA_CT1 genus=Tannerella taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
ribonuclease H
ar4r2_scaffold_667_11
GWA2_Bacteroidetes_31_9_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12618..13292
DNA (675bp) protein (225aa)
TonB family protein; K03832 periplasmic protein TonB Tax=GWA2_Bacteroidetes_31_9_curated
TonB id=4224461 bin=GWF2_Bacteroidetes_33_38 species=unknown genus=Anaerophaga taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_33_38 organism_group=Bacteroidetes organism_desc=a699
energy transducer TonB
ar4r2_scaffold_667_12
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

13337..14071
DNA (735bp) protein (245aa)
birA, biotin-[acetyl-CoA-carboxylase] ligase region (EC:6.3.4.15) Tax=GWE2_Bacteroidetes_42_39_curated
Biotin-[acetyl-CoA-carboxylase] ligase id=2419219 bin=GWA2_Bacteroidetes_42_15 species=Bacteroides fragilis genus=Bacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWA2_Bacteroidetes_42_15 organism_group=Bacteroidetes
biotin/lipoate A/B protein ligase family protein
ar4r2_scaffold_667_13
GWD2_Bacteroidetes_33_33_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14073..17072)
DNA (3000bp) protein (1000aa)
translation initiation factor IF-2; K02519 translation initiation factor IF-2 Tax=GWD2_Bacteroidetes_33_33_curated
translation initiation factor IF-2 id=2249495 bin=GWB2_Bacteroidetes_32_14 species=Marinilabilia salmonicolor genus=Marinilabilia taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWB2_Bacteroidetes_32_14 organism_group=Bacteroidetes organism_desc=a47 rbh
translation initiation factor IF-2
ar4r2_scaffold_667_14
GWF2_Bacteroidetes_38_335_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17114..18355)
DNA (1242bp) protein (414aa)
transcription elongation factor NusA id=3532531 bin=GWF2_Bacteroidetes_38_335 species=unknown genus=unknown taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11 rbh
NusA antitermination factor; K02600 N utilization substance protein A Tax=GWF2_Bacteroidetes_38_335_curated
NusA antitermination factor
ar4r2_scaffold_667_15
Prevotella bivia, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(18363..18827)
DNA (465bp) protein (155aa)
Ribosome maturation factor RimP n=2 Tax=Prevotella bivia RepID=I4Z8P5_9BACT
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077}; TaxID=868129 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella bivia DSM
hypothetical protein
ar4r2_scaffold_667_16
GWA2_Bacteroidetes_30_7_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18941..19456)
DNA (516bp) protein (172aa)
shikimate kinase (EC:2.7.1.71); K00891 shikimate kinase [EC:2.7.1.71] Tax=GWA2_Bacteroidetes_30_7_curated
hypothetical protein n=1 Tax=Flavobacteriaceae bacterium P7-3-5 RepID=UPI00037AD35D
shikimate kinase
ar4r2_scaffold_667_17
GWF2_Bacteroidetes_35_48_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


19564..20160
DNA (597bp) protein (199aa)
Non-canonical purine NTP pyrophosphatase id=4309916 bin=GWF2_Bacteroidetes_35_48 species=Odoribacter laneus genus=Odoribacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_35_48 organism_group=Bacteroidetes organism_desc=a81
RdgB/HAM1 family non-canonical purine NTP pyrophosphatase Tax=GWF2_Bacteroidetes_35_48_curated
deoxyribonucleotide triphosphate pyrophosphatase
ar4r2_scaffold_667_18
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

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20224..20772
DNA (549bp) protein (183aa)
30S ribosomal protein S16 id=4715926 bin=GWA2_Bacteroidetes_42_15 species=Marinilabilia salmonicolor genus=Marinilabilia taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWA2_Bacteroidetes_42_15 organism_group=Bacteroidetes
30S ribosomal protein S16 Tax=GWE2_Bacteroidetes_42_39_curated
rpsP; 30S ribosomal protein S16
ar4r2_scaffold_667_19
Halobacteroides halobius, Halobacteroides, Halanaerobiales, Clostridia, Firmicutes, Bacteria

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20784..21299
DNA (516bp) protein (172aa)
Ribosome maturation factor RimM n=1 Tax=Halobacteroides halobius (strain ATCC 35273 / DSM 5150 / MD-1) RepID=L0K6E7_HALHC
16S rRNA processing protein RimM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=748449 species="Bacteria; Firmicutes; Clostridia; Halanaerobiales; Halobacteroidaceae; Halobacte
ar4r2_scaffold_667_20
GWF2_Bacteroidetes_41_31_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21305..21988
DNA (684bp) protein (228aa)
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.-); K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] Tax=GWF2_Bacteroidetes_41_31_curated
Ribosomal large subunit pseudouridine synthase D id=4573291 bin=GWF2_Bacteroidetes_41_31 species=Bacteroides coprocola genus=Bacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
ribosomal large subunit pseudouridine synthase D
ar4r2_scaffold_667_21
GWF2_Bacteroidetes_35_48_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22063..26667
DNA (4605bp) protein (1535aa)
Gliding motility-related protein protein id=4309902 bin=GWF2_Bacteroidetes_35_48 species=Fluviicola taffensis genus=Fluviicola taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_35_48 organism_group=Bacteroidetes organism_desc=a81 rbh
gliding motility-like protein Tax=GWF2_Bacteroidetes_35_48_curated
PKD domain-containing protein
ar4r2_scaffold_667_22
GWA2_Bacteroidetes_31_9_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27116..28123
DNA (1008bp) protein (336aa)
pyruvate carboxyltransferase Tax=GWA2_Bacteroidetes_31_9_curated
Pyruvate carboxyltransferase id=3701873 bin=GWF2_Bacteroidetes_43_11 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Bacteroidetes_43_11 organism_group=Bacteroidetes
pyruvate carboxyltransferase
ar4r2_scaffold_667_23
BJP_08E140C01_Bacteriodales_41_10, Bacteriodales, Bacteroidia, Bacteroidetes, Bacteria

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28328..32578
DNA (4251bp) protein (1417aa)
Sheath polysaccharide-degrading enzyme id=2027557 bin=GWE2_Bacteroidetes_42_42 species=Fulvivirga imtechensis genus=Fulvivirga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_42 organism_group=Bacteroidetes organism_desc=Good + rbh
hypothetical protein
Tax=BJP_08E140C01_Bacteriodales_41_10
ar4r2_scaffold_667_24
GWE2_Bacteroidetes_29_8_curated, Bacteroidetes, Bacteria

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comp(32741..32905)
DNA (165bp) protein (55aa)
transposase Tax=GWE2_Bacteroidetes_29_8_curated
Displaying 24 items

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