ggKbase home page

ar4r2_scaffold_534

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_534_1
Myroides odoratimimus, Myroides, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3..437)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Myroides odoratimimus CCUG 10230 RepID=H1GKQ9_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EHO09650.1}; TaxID=883150 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Myroides.;" source="Myroides odoratimimus CCUG 10230.;"
transposase, IS30 family
ar4r2_scaffold_534_2
CG_Bacteroid_02, Bacteroidetes, Bacteria

Not on your lists

comp(689..2917)
DNA (2229bp) protein (743aa)
isocitrate dehydrogenase (EC:1.1.1.42) rbh
Isocitrate dehydrogenase, NADP-dependent n=1 Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E9R4_GEOLS rbh
Tax=CG_Bacteroid_02
ar4r2_scaffold_534_3
GWF2_Bacteroidetes_33_38_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3177..4958
DNA (1782bp) protein (594aa)
Cl- channel voltage-gated family protein id=3804336 bin=GWF2_Bacteroidetes_33_38 species=Marinilabilia salmonicolor genus=Marinilabilia taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_33_38 organism_group=Bacteroidetes organism_desc=a699 rbh
chloride channel protein
Tax=GWF2_Bacteroidetes_33_38_curated
ar4r2_scaffold_534_4
CG_Bacteroid_02, Bacteroidetes, Bacteria

Not on your lists

comp(5303..6097)
DNA (795bp) protein (265aa)
hypothetical protein n=1 Tax=Flexithrix dorotheae RepID=UPI00036158C4
hypothetical protein
Tax=CG_Bacteroid_02
ar4r2_scaffold_534_5
GWA2_Bacteroidetes_30_7_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6176..7174)
DNA (999bp) protein (333aa)
3-oxoacyl-(acyl-carrier-protein) synthase III (EC:2.3.1.41) rbh
3-oxoacyl-(acyl-carrier-protein) synthase 3 id=3761854 bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes rbh
Tax=GWA2_Bacteroidetes_30_7_curated
ar4r2_scaffold_534_6
GWA2_Bacteroidetes_31_9b_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7167..8114)
DNA (948bp) protein (316aa)
Phosphate acyltransferase id=2300933 bin=GWB2_Bacteroidetes_32_14 species=Solitalea canadensis genus=Solitalea taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWB2_Bacteroidetes_32_14 organism_group=Bacteroidetes organism_desc=a47 rbh
phosphate:acyl-(acyl carrier protein) acyltransferase rbh
Tax=GWA2_Bacteroidetes_31_9b_curated
ar4r2_scaffold_534_7
Odoribacter laneus CAG:561, Odoribacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(8190..8375)
DNA (186bp) protein (62aa)
50S ribosomal protein L32 n=2 Tax=Odoribacter RepID=H1DKH1_9PORP
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=1263089 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Odoribacter; environmental samples.;" source="Odoribacter laneus CAG:561.;"
50S ribosomal protein L32
ar4r2_scaffold_534_8
GWD2_Bacteroidetes_33_33_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8405..8911)
DNA (507bp) protein (169aa)
hypothetical protein MsalJ2_14838 id=2300931 bin=GWB2_Bacteroidetes_32_14 species=Marinilabilia salmonicolor genus=Marinilabilia taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWB2_Bacteroidetes_32_14 organism_group=Bacteroidetes organism_desc=a47
DNA-binding protein
Tax=GWD2_Bacteroidetes_33_33_curated
ar4r2_scaffold_534_9
GWA2_Bacteroidetes_30_7_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9022..9411)
DNA (390bp) protein (130aa)
id=2067326 bin=GWD2_Bacteroidetes_40_43 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
Tax=GWA2_Bacteroidetes_30_7_curated
ar4r2_scaffold_534_10
GWF2_Bacteroidetes_38_335_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9413..10816)
DNA (1404bp) protein (468aa)
23S rRNA m(5)U-1939 methyltransferase id=4001144 bin=GWF2_Bacteroidetes_38_335 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11 rbh
RNA methyltransferase rbh
Tax=GWF2_Bacteroidetes_38_335_curated
ar4r2_scaffold_534_11
GWA2_Bacteroidetes_32_17_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11846..15832
DNA (3987bp) protein (1329aa)
Multi-sensor hybrid histidine kinase id=4000925 bin=GWF2_Bacteroidetes_38_335 species=Mucilaginibacter paludis genus=Mucilaginibacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
multi-sensor hybrid histidine kinase
Tax=GWA2_Bacteroidetes_32_17_curated
ar4r2_scaffold_534_12
GWA2_Bacteroidetes_32_17_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15845..17815
DNA (1971bp) protein (657aa)
PAS/PAC sensor hybrid histidine kinase (EC:2.7.3.-) rbh
Sensory box histidine kinase/response regulator id=2236420 bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes rbh
Tax=GWA2_Bacteroidetes_32_17_curated
ar4r2_scaffold_534_trna_1
unknown

Not on your lists

comp(17865..17935)
DNA (71bp)
transferRNA Cys
ar4r2_scaffold_534_13
Saccharicrinis fermentans, Saccharicrinis, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18085..19296
DNA (1212bp) protein (404aa)
ornithine aminotransferase (EC:2.6.1.13) rbh
Ornithine aminotransferase {ECO:0000313|EMBL:GAF05090.1}; TaxID=869213 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Saccharicrinis.;" source="Saccharicrinis fermentans DSM 9555 = JCM 21142.;"
ornithine aminotransferase id=3367056 bin=GWF2_Bacteroidetes_38_335 species=Anaerophaga thermohalophila genus=Anaerophaga taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11 rbh
ar4r2_scaffold_534_14
GWA2_Bacteroidetes_30_7_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19341..20084)
DNA (744bp) protein (248aa)
Putative uncharacterized protein id=4437330 bin=GWF2_Bacteroidetes_33_38 species=Microscilla marina genus=Microscilla taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_33_38 organism_group=Bacteroidetes organism_desc=a699
hypothetical protein
Tax=GWA2_Bacteroidetes_30_7_curated
ar4r2_scaffold_534_15
GWD2_Bacteroidetes_33_33_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20092..21450)
DNA (1359bp) protein (453aa)
ABC transporter permease id=3311047 bin=GWA2_Bacteroidetes_33_15 species=Marinilabilia salmonicolor genus=Marinilabilia taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWA2_Bacteroidetes_33_15 organism_group=Bacteroidetes rbh
Fe-S cluster assembly protein SufD
Tax=GWD2_Bacteroidetes_33_33_curated
ar4r2_scaffold_534_16
GWF2_Bacteroidetes_38_335_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21490..22242)
DNA (753bp) protein (251aa)
FeS assembly ATPase SufC id=4523805 bin=GWF2_Bacteroidetes_38_335 species=Bacteroides coprosuis genus=Bacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11 rbh
ABC transporter ATP-binding protein rbh
Tax=GWF2_Bacteroidetes_38_335_curated
ar4r2_scaffold_534_17
RBG_13_Bacteroidetes_42_15_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22276..23721)
DNA (1446bp) protein (482aa)
cysteine desulfurase activator complex subunit SufB n=1 Tax=Porphyromonas macacae RepID=UPI0003749FED rbh
cysteine desulfurase rbh
Tax=RBG_13_Bacteroidetes_42_15_curated
ar4r2_scaffold_534_18
GWA2_Bacteroidetes_32_17_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23891..24415
DNA (525bp) protein (175aa)
Response regulator receiver protein id=4414357 bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes
Tax=GWA2_Bacteroidetes_32_17_curated
ar4r2_scaffold_534_19
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24412..25281)
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IHL6_FLUTR
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
ar4r2_scaffold_534_20
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25286..26404)
DNA (1119bp) protein (373aa)
Uncharacterized protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IHL5_FLUTR rbh
hypothetical protein rbh
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
ar4r2_scaffold_534_21
GWF2_Bacteroidetes_38_335_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26594..27856)
DNA (1263bp) protein (421aa)
SusC-like TonB-dependent outer membrane receptor id=4524530 bin=GWF2_Bacteroidetes_38_335 species=Flavobacterium branchiophilum genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11 rbh
Tax=GWF2_Bacteroidetes_38_335_curated
ar4r2_scaffold_534_22
GWF2_Bacteroidetes_38_335_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27953..28381)
DNA (429bp) protein (143aa)
SusC-like TonB-dependent outer membrane receptor id=4524530 bin=GWF2_Bacteroidetes_38_335 species=Flavobacterium branchiophilum genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
TonB-dependent receptor
Tax=GWF2_Bacteroidetes_38_335_curated
ar4r2_scaffold_534_23
BJP_IG2102_Bacteroidetes_40_9, Bacteroidetes, Bacteria

Not on your lists

comp(28722..29138)
DNA (417bp) protein (139aa)
PIN domain containing protein id=3542350 bin=GWF2_Bacteroidetes_41_31 species=Gramella forsetii genus=Gramella taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
twitching motility protein PilT
Tax=BJP_IG2102_Bacteroidetes_40_9
ar4r2_scaffold_534_24
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29135..29386)
DNA (252bp) protein (84aa)
Uncharacterized protein {ECO:0000313|EMBL:KHJ39239.1}; TaxID=1122941 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter glucosidilyticus.;"
Putative uncharacterized protein id=3542351 bin=GWF2_Bacteroidetes_41_31 species=Gillisia limnaea genus=Gillisia taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
hypothetical protein
ar4r2_scaffold_534_25
unknown

Not on your lists

comp(29430..29606)
DNA (177bp) protein (59aa)

This feature has no annotations

ar4r2_scaffold_534_26
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29896..31098)
DNA (1203bp) protein (401aa)
Uncharacterized protein n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KMG5_SOLCM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFD08760.1}; Flags: Precursor;; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
ar4r2_scaffold_534_27
GWA2_Bacteroidetes_32_17_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

31338..32264
DNA (927bp) protein (309aa)
Putative uncharacterized protein id=3807159 bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes
hypothetical protein
Tax=GWA2_Bacteroidetes_32_17_curated
ar4r2_scaffold_534_28
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(32558..33031)
DNA (474bp) protein (158aa)
Transposase, ISSod11/IS1595 family id=2104098 bin=GWD2_Bacteroidetes_40_43 species=unknown genus=Psychroflexus taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
hypothetical protein
Tax=GWE2_Bacteroidetes_40_63_curated
Displaying 29 items

View Taxonomy