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ar4r2_scaffold_835

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_835_trna_2
unknown

Not on your lists

comp(89..161)
DNA (73bp)
transferRNA Arg
ar4r2_scaffold_835_trna_1
unknown

Not on your lists

comp(212..284)
DNA (73bp)
transferRNA Ala
ar4r2_scaffold_835_1
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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544..2058
DNA (1515bp) protein (505aa)
Uncharacterized protein n=1 Tax=Beggiatoa alba B18LD RepID=I3CFR3_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:KHD07269.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
adenylate cyclase
ar4r2_scaffold_835_2
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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2082..3167
DNA (1086bp) protein (362aa)
FAD dependent oxidoreductase n=1 Tax=Beggiatoa sp. PS RepID=A7BWK7_9GAMM rbh
FAD dependent oxidoreductase
FAD dependent oxidoreductase {ECO:0000313|EMBL:BAP55451.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_835_3
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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3299..4093
DNA (795bp) protein (265aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Beggiatoa sp. PS RepID=A7C0M9_9GAMM
ribosomal RNA adenine methylase transferase
ar4r2_scaffold_835_4
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4172..5152
DNA (981bp) protein (327aa)
Diguanylate cyclase (GGDEF domain) n=1 Tax=Beggiatoa sp. PS RepID=A7C1M7_9GAMM
diguanylate cyclase
Diguanylate cyclase {ECO:0000313|EMBL:BAP56990.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_835_5
unknown

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comp(5380..6063)
DNA (684bp) protein (228aa)

This feature has no annotations

ar4r2_scaffold_835_6
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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6454..6888
DNA (435bp) protein (145aa)
30S ribosomal protein S6 n=1 Tax=Beggiatoa alba B18LD RepID=I3CK39_9GAMM
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360, ECO:0000256|SAAS:SAAS00020539}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
30S ribosomal protein S6
ar4r2_scaffold_835_7
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6909..7136
DNA (228bp) protein (76aa)
30S ribosomal protein S18 n=1 Tax=Beggiatoa sp. PS RepID=A7BWZ8_9GAMM
30S ribosomal protein S18
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_835_8
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7152..7601
DNA (450bp) protein (150aa)
50S ribosomal protein L9 n=1 Tax=Beggiatoa sp. PS RepID=A7BWZ9_9GAMM
50S ribosomal protein L9
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_835_9
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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7681..9084
DNA (1404bp) protein (468aa)
Replicative DNA helicase n=1 Tax=Beggiatoa alba B18LD RepID=I3CK42_9GAMM rbh
Replicative DNA helicase {ECO:0000313|EMBL:EIJ43985.1}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
replicative DNA helicase rbh
ar4r2_scaffold_835_10
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9090..10163
DNA (1074bp) protein (358aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|SAAS:SAAS00021659}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|SAAS:SAAS00021659};; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
Alanine racemase n=1 Tax=Beggiatoa sp. PS RepID=A7BWJ8_9GAMM rbh
alanine racemase
ar4r2_scaffold_835_11
Arthrospira platensis, Arthrospira, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(10169..10657)
DNA (489bp) protein (163aa)
type II restriction endonuclease PvuII n=1 Tax=Synechococcus sp. PCC 7336 RepID=UPI00034D8141
Type II site-specific deoxyribonuclease {ECO:0000313|EMBL:EKD08191.1}; TaxID=459495 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Arthrospira.;" source="Arthrospira platensis C1.;"
type II restriction endonuclease PvuII
ar4r2_scaffold_835_12
Gallionella capsiferriformans, Gallionella, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10635..10877)
DNA (243bp) protein (81aa)
Helix-turn-helix domain protein n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SEM1_GALCS
helix-turn-helix domain-containing protein
Helix-turn-helix domain protein {ECO:0000313|EMBL:ADL56916.1}; TaxID=395494 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Gallionella.;" source="Gallionella capsiferriformans (strain ES-2) (Gallionella ferruginea; capsiferriformans (strain ES-2)).;"
ar4r2_scaffold_835_13
Richelia intracellularis, Richelia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

10932..11960
DNA (1029bp) protein (343aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=1164990 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Richelia.;" source="Richelia intracellularis.;"
DNA methyltransferase n=1 Tax=Synechococcus sp. PCC 7336 RepID=UPI0003453D84 rbh
site-specific DNA methyltransferase
ar4r2_scaffold_835_14
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12150..12692
DNA (543bp) protein (181aa)
Smr protein/MutS2 n=1 Tax=Beggiatoa sp. PS RepID=A7BSE0_9GAMM
Smr protein/MutS2 {ECO:0000313|EMBL:EDN70545.1}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
Smr protein/MutS2
ar4r2_scaffold_835_15
unknown

Not on your lists

13043..13351
DNA (309bp) protein (103aa)

This feature has no annotations

ar4r2_scaffold_835_16
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13382..13774
DNA (393bp) protein (131aa)
Putative uncharacterized protein n=1 Tax=Beggiatoa sp. PS RepID=A7C0P7_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAP56952.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_835_17
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13802..15007
DNA (1206bp) protein (402aa)
Putative uncharacterized protein n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L1L4_HALNC rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAP56953.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_835_18
Crinalium epipsammum, Crinalium, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

15134..15748
DNA (615bp) protein (205aa)
pyridoxamine 5'-phosphate oxidase (EC:1.4.3.5)
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_01629}; TaxID=1173022 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Crinalium.;" source="Crinalium epipsammum PCC 9333.;"
Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 Tax=Crinalium epipsammum PCC 9333 RepID=K9W0F7_9CYAN
ar4r2_scaffold_835_19
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15791..16912
DNA (1122bp) protein (374aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00038266CE rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAP54834.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_835_20
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17014..18702
DNA (1689bp) protein (563aa)
Putative uncharacterized protein n=1 Tax=Beggiatoa sp. PS RepID=A7BXA4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EDN68830.1}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
hypothetical protein
ar4r2_scaffold_835_21
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18707..20410
DNA (1704bp) protein (568aa)
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB n=1 Tax=Beggiatoa alba B18LD RepID=I3CJX4_9GAMM rbh
secretion system protein E
Secretion system protein E {ECO:0000313|EMBL:BAP54720.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_835_22
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20837..22921
DNA (2085bp) protein (695aa)
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Beggiatoa alba B18LD RepID=I3CF72_9GAMM rbh
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:BAP56210.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_835_23
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22930..23886
DNA (957bp) protein (319aa)
Formate hydrogenlyase subunit 4 n=1 Tax=Beggiatoa alba B18LD RepID=I3CG09_9GAMM rbh
formate hydrogenlyase subunit 4
Formate hydrogenlyase subunit 4 {ECO:0000313|EMBL:BAP55846.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_835_24
Thiorhodospira sibirica, Thiorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23962..24849
DNA (888bp) protein (296aa)
Protease HtpX {ECO:0000256|HAMAP-Rule:MF_00188}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_00188};; Heat shock protein HtpX {ECO:0000256|HAMAP-Rule:MF_00188}; TaxID=765914 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thiorhodospira.;" source="Thiorhodospira sibirica ATCC 700588.;"
Protease HtpX n=1 Tax=Thiorhodospira sibirica ATCC 700588 RepID=G4E4G1_9GAMM rbh
heat shock protein HtpX
ar4r2_scaffold_835_25
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25111..25758
DNA (648bp) protein (216aa)
Secreted protein n=1 Tax=Beggiatoa sp. PS RepID=A7BYX4_9GAMM
Secreted protein {ECO:0000313|EMBL:EDN68259.1}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
secreted protein
Displaying 27 items

View Taxonomy