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ar4r2_scaffold_316

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_316_trna_1
unknown

Not on your lists

comp(98..170)
DNA (73bp)
transferRNA Lys
ar4r2_scaffold_316_1
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(681..1073)
DNA (393bp) protein (131aa)
50S ribosomal protein L17 n=1 Tax=Beggiatoa alba B18LD RepID=I3CIJ7_9GAMM
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
50S ribosomal protein L17
ar4r2_scaffold_316_2
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1167..2162)
DNA (996bp) protein (332aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
DNA-directed RNA polymerase subunit alpha n=1 Tax=Beggiatoa alba B18LD RepID=I3CIJ8_9GAMM rbh
DNA-directed RNA polymerase subunit alpha
ar4r2_scaffold_316_3
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2354..2977)
DNA (624bp) protein (208aa)
30S ribosomal protein S4 n=1 Tax=Beggiatoa alba B18LD RepID=I3CIJ9_9GAMM rbh
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; Flags: Precursor;; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
30S ribosomal protein S4
ar4r2_scaffold_316_4
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2993..3388)
DNA (396bp) protein (132aa)
30S ribosomal protein S11 n=1 Tax=Beggiatoa sp. PS RepID=A7BWR6_9GAMM
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
30S ribosomal protein S11
ar4r2_scaffold_316_5
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3448..3804)
DNA (357bp) protein (119aa)
30S ribosomal protein S13 n=1 Tax=Beggiatoa alba B18LD RepID=I3CIK1_9GAMM
30S ribosomal protein S13
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_316_6
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(4018..5355)
DNA (1338bp) protein (446aa)
Protein translocase subunit SecY n=1 Tax=Beggiatoa alba B18LD RepID=I3CIK3_9GAMM rbh
preprotein translocase subunit SecY
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_316_7
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(5422..5856)
DNA (435bp) protein (145aa)
50S ribosomal protein L15 n=1 Tax=Beggiatoa alba B18LD RepID=I3CIK4_9GAMM
50S ribosomal protein L15
Tax=BJP_IG2102_Gammaproteobacteria_62_140
ar4r2_scaffold_316_8
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(5860..6042)
DNA (183bp) protein (61aa)
50S ribosomal protein L30 n=1 Tax=Beggiatoa alba B18LD RepID=I3CIK5_9GAMM
50S ribosomal protein L30
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_316_9
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6075..6608)
DNA (534bp) protein (178aa)
30S ribosomal protein S5 n=1 Tax=Beggiatoa alba B18LD RepID=I3CIK6_9GAMM
30S ribosomal protein S5
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_316_10
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6622..6981)
DNA (360bp) protein (120aa)
50S ribosomal protein L18 n=1 Tax=Beggiatoa alba B18LD RepID=I3CIK7_9GAMM
50S ribosomal protein L18
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_316_11
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6997..7530)
DNA (534bp) protein (178aa)
50S ribosomal protein L6 n=1 Tax=Beggiatoa alba B18LD RepID=I3CIK8_9GAMM
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
rplF; 50S ribosomal protein L6
ar4r2_scaffold_316_12
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(7593..7985)
DNA (393bp) protein (131aa)
30S ribosomal protein S8 n=1 Tax=Beggiatoa alba B18LD RepID=I3CIK9_9GAMM
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
30S ribosomal protein S8
ar4r2_scaffold_316_13
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8023..8328)
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=1 Tax=Beggiatoa sp. SS RepID=A7BMN3_9GAMM
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
30S ribosomal protein S14
ar4r2_scaffold_316_14
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8339..8878)
DNA (540bp) protein (180aa)
50S ribosomal protein L5 n=1 Tax=Beggiatoa alba B18LD RepID=I3CIL1_9GAMM rbh
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
50S ribosomal protein L5
ar4r2_scaffold_316_15
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8927..9244)
DNA (318bp) protein (106aa)
50S ribosomal protein L24 n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AB99_9PROT
rplX2; 50S ribosomal protein L24
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
ar4r2_scaffold_316_16
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9299..9667)
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Beggiatoa alba B18LD RepID=I3CIL3_9GAMM
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
50S ribosomal protein L14
ar4r2_scaffold_316_17
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9823..10113)
DNA (291bp) protein (97aa)
30S ribosomal protein S17 n=1 Tax=Beggiatoa alba B18LD RepID=I3CIL4_9GAMM
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
30S ribosomal protein S17
ar4r2_scaffold_316_18
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10110..10307)
DNA (198bp) protein (66aa)
50S ribosomal protein L29 n=1 Tax=Beggiatoa alba B18LD RepID=I3CIL5_9GAMM
50S ribosomal protein L29
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_316_19
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10307..10720)
DNA (414bp) protein (138aa)
50S ribosomal protein L16 n=1 Tax=Beggiatoa alba B18LD RepID=I3CIL6_9GAMM
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
50S ribosomal protein L16
ar4r2_scaffold_316_20
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10726..11412)
DNA (687bp) protein (229aa)
30S ribosomal protein S3 n=1 Tax=Beggiatoa alba B18LD RepID=I3CIL7_9GAMM rbh
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
30S ribosomal protein S3
ar4r2_scaffold_316_21
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11434..11766)
DNA (333bp) protein (111aa)
50S ribosomal protein L22 n=1 Tax=Beggiatoa alba B18LD RepID=I3CIL8_9GAMM
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
50S ribosomal protein L22
ar4r2_scaffold_316_22
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11846..12118)
DNA (273bp) protein (91aa)
30S ribosomal protein S19 n=1 Tax=Beggiatoa alba B18LD RepID=I3CIL9_9GAMM
30S ribosomal protein S19
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_316_23
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12180..13001)
DNA (822bp) protein (274aa)
50S ribosomal protein L2 n=1 Tax=Beggiatoa alba B18LD RepID=I3CIM0_9GAMM rbh
50S ribosomal protein L2
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_316_24
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(13064..13357)
DNA (294bp) protein (98aa)
50S ribosomal protein L23 n=1 Tax=Beggiatoa alba B18LD RepID=I3CIM1_9GAMM
50S ribosomal protein L23
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_316_25
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(13354..13959)
DNA (606bp) protein (202aa)
50S ribosomal protein L4 n=1 Tax=Beggiatoa alba B18LD RepID=I3CIM2_9GAMM
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
ribosomal protein L4/L1e
ar4r2_scaffold_316_26
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(13974..14633)
DNA (660bp) protein (220aa)
50S ribosomal protein L3 n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00035F2A14 rbh
50S ribosomal protein L3 rbh
50S ribosomal protein L3 {ECO:0000255|HAMAP-Rule:MF_01325}; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
ar4r2_scaffold_316_27
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(14693..15004)
DNA (312bp) protein (104aa)
30S ribosomal protein S10 n=1 Tax=Beggiatoa alba B18LD RepID=I3CIM4_9GAMM
30S ribosomal protein S10
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_316_28
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15055..16245)
DNA (1191bp) protein (397aa)
Elongation factor Tu n=1 Tax=Beggiatoa alba B18LD RepID=I3CIM5_9GAMM rbh
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
translation elongation factor Tu
ar4r2_scaffold_316_29
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16421..18520)
DNA (2100bp) protein (700aa)
Elongation factor G n=1 Tax=Beggiatoa alba B18LD RepID=I3CIM6_9GAMM rbh
translation elongation factor EF-G
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
Displaying items 1-30 of 51 in total

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