ggKbase home page

ar4r2_scaffold_206

Search features with annotation key words

Displaying items 31-60 of 61 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_206_30
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

46628..48862
DNA (2235bp) protein (745aa)
TonB-dependent receptor n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C0Z8_NITHN
Uncharacterized protein {ECO:0000313|EMBL:KHD04965.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
TonB-dependent receptor
ar4r2_scaffold_206_31
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

49124..51175
DNA (2052bp) protein (684aa)
TonB-dependent receptor n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C0Z8_NITHN
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:ADE14555.1}; Flags: Precursor;; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
ar4r2_scaffold_206_32
Nitrosococcus watsonii, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

51266..52075
DNA (810bp) protein (270aa)
Putative uncharacterized protein n=1 Tax=Nitrosococcus watsoni (strain C-113) RepID=D8K5B3_NITWC rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADJ28090.1}; TaxID=105559 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus watsoni (strain C-113).;"
ar4r2_scaffold_206_33
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

52079..52894
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C0Z7_NITHN rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADE14554.1}; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
ar4r2_scaffold_206_34
Microcoleus sp. PCC 7113, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

52975..54246
DNA (1272bp) protein (424aa)
Glycosyl transferase, UDP-glucuronosyltransferase n=1 Tax=Microcoleus sp. PCC 7113 RepID=K9W960_9CYAN rbh
UDP-glucuronosyltransferase rbh
Glycosyl transferase, UDP-glucuronosyltransferase {ECO:0000313|EMBL:AFZ16930.1}; TaxID=1173027 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus sp. PCC 7113.;"
ar4r2_scaffold_206_35
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54538..55734)
DNA (1197bp) protein (399aa)
Sulfate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00066}; EC=2.7.7.4 {ECO:0000256|HAMAP-Rule:MF_00066};; ATP-sulfurylase {ECO:0000256|HAMAP-Rule:MF_00066}; Sulfate adenylate transferase {ECO:0000256|HAMAP-Rule:MF_00066}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
Sulfate adenylyltransferase n=1 Tax=Thioalkalivibrio thiocyanoxidans ARh 4 RepID=G4DFV3_9GAMM rbh
sulfate adenylyltransferase
ar4r2_scaffold_206_36
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

56102..56566
DNA (465bp) protein (155aa)
Dissimilatory adenylylsulfate reductase beta subunit n=2 Tax=Thiocystis violascens RepID=I3YDV5_THIV6
dissimilatory adenylylsulfate reductase beta subunit
Dissimilatory adenylylsulfate reductase beta subunit {ECO:0000313|EMBL:BAP57402.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_206_37
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

56664..58577
DNA (1914bp) protein (638aa)
Dissimilatory adenylylsulfate reductase alpha subunit n=1 Tax=Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) RepID=I3YDV4_THIV6 rbh
Dissimilatory adenylylsulfate reductase alpha subunit {ECO:0000313|EMBL:BAP57403.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
dissimilatory adenylylsulfate reductase alpha subunit precursor
ar4r2_scaffold_206_38
unknown

Not on your lists

58620..58721
DNA (102bp) protein (34aa)

This feature has no annotations

ar4r2_scaffold_206_39
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

58732..60165
DNA (1434bp) protein (478aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
Pyruvate kinase n=1 Tax=Beggiatoa alba B18LD RepID=I3CEP3_9GAMM rbh
pyruvate kinase
ar4r2_scaffold_206_40
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

60174..60704
DNA (531bp) protein (177aa)
N-acetyl-anhydromuranmyl-L-alanine amidase n=1 Tax=Pseudoalteromonas rubra ATCC 29570 RepID=U1LVQ9_9GAMM
N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD {ECO:0000313|EMBL:BAP58244.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_206_41
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

61251..62372
DNA (1122bp) protein (374aa)
Polymorphic outer membrane protein n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NN06_ROSCS
polymorphic outer membrane protein
Polymorphic outer membrane protein {ECO:0000313|EMBL:ABU58935.1}; Flags: Precursor;; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
ar4r2_scaffold_206_42
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(62593..63390)
DNA (798bp) protein (266aa)
3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725}; EC=2.1.2.11 {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725};; Ketopantoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
3-methyl-2-oxobutanoate hydroxymethyltransferase n=1 Tax=Beggiatoa sp. PS RepID=A7BVR3_9GAMM rbh
ketopantoate hydroxymethyltransferase
ar4r2_scaffold_206_43
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(63391..63876)
DNA (486bp) protein (162aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase n=1 Tax=Beggiatoa alba B18LD RepID=I3CG45_9GAMM
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase {ECO:0000313|EMBL:BAP55860.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_206_44

Not on your lists

comp(63969..64379)
DNA (411bp) protein (137aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002EA51B8
Uncharacterized protein {ECO:0000313|EMBL:KKN76862.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
ar4r2_scaffold_206_45
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(64466..64774)
DNA (309bp) protein (103aa)
Protein RnfH 2 n=1 Tax=Beggiatoa alba B18LD RepID=I3CEM2_9GAMM
UPF0125 protein BegalDRAFT_1163 {ECO:0000256|HAMAP-Rule:MF_00460}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
hypothetical protein
ar4r2_scaffold_206_46
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(64761..65198)
DNA (438bp) protein (146aa)
Putative uncharacterized protein n=1 Tax=Beggiatoa sp. PS RepID=A7BZ06_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAP57109.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_206_47
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(65211..66647)
DNA (1437bp) protein (479aa)
Transporter n=1 Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=D3RVU6_ALLVD rbh
Transporter {ECO:0000256|RuleBase:RU003732}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
sodium:neurotransmitter symporter rbh
ar4r2_scaffold_206_48
Pseudomonas sp. MRSN12121, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(67112..67549)
DNA (438bp) protein (146aa)
hypothetical protein n=1 Tax=Pseudomonas psychrophila RepID=UPI000374CC1A
Cro/Cl family transcriptional regulator
Uncharacterized protein {ECO:0000313|EMBL:AJO79258.1}; TaxID=1611770 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. MRSN12121.;"
ar4r2_scaffold_206_49
Prevotella sp. oral taxon 317, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(67808..68179)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Prevotella sp. oral taxon 317 str. F0108 RepID=D3IJL9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EFC68517.1}; TaxID=575615 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella sp. oral taxon 317 str. F0108.;"
ar4r2_scaffold_206_50
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(68247..69380)
DNA (1134bp) protein (378aa)
Conserved hypothetical integral membrane protein n=1 Tax=Beggiatoa alba B18LD RepID=I3CIC8_9GAMM rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAP56761.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_206_51
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(69398..70348)
DNA (951bp) protein (317aa)
hypothetical protein n=1 Tax=Nonomuraea coxensis RepID=UPI0003616C4C
Ricin B lectin {ECO:0000313|EMBL:ETK32919.1}; TaxID=316330 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
ricin b lectin
ar4r2_scaffold_206_52
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

70819..72495
DNA (1677bp) protein (559aa)
DNA repair protein RecN n=1 Tax=Beggiatoa alba B18LD RepID=I3CG95_9GAMM rbh
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
DNA repair protein RecN
ar4r2_scaffold_206_53
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

72483..74774
DNA (2292bp) protein (764aa)
Uncharacterized protein n=1 Tax=Beggiatoa alba B18LD RepID=I3CD85_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIJ41578.1}; Flags: Precursor;; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
TPR repeat containing protein
ar4r2_scaffold_206_54
Thiorhodospira sibirica, Thiorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(74981..79126)
DNA (4146bp) protein (1382aa)
MscS Mechanosensitive ion channel n=1 Tax=Thiorhodospira sibirica ATCC 700588 RepID=G4E509_9GAMM
MscS Mechanosensitive ion channel {ECO:0000313|EMBL:EGZ46764.1}; TaxID=765914 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thiorhodospira.;" source="Thiorhodospira sibirica ATCC 700588.;"
mechanosensitive ion channel MscS
ar4r2_scaffold_206_55
Sulfurimonas gotlandica, Sulfurimonas, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(79453..80139)
DNA (687bp) protein (229aa)
CHAD domain containing protein n=3 Tax=Sulfurimonas gotlandica GD1 RepID=H1FS73_9HELI
CHAD domain containing protein {ECO:0000313|EMBL:EHP28619.1}; TaxID=929558 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Sulfurimonas.;" source="Sulfurimonas gotlandica (strain DSM 19862 / JCM 16533 / GD1).;"
hypothetical protein
ar4r2_scaffold_206_56
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(80132..82477)
DNA (2346bp) protein (782aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; Flags: Precursor;; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
Signal transduction histidine kinase n=1 Tax=Beggiatoa alba B18LD RepID=I3CFB1_9GAMM rbh
sensory box histidine kinase/response regulator
ar4r2_scaffold_206_57
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(82792..83727)
DNA (936bp) protein (312aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
Ribosomal RNA small subunit methyltransferase H n=1 Tax=Beggiatoa alba B18LD RepID=I3CKQ0_9GAMM rbh
bacterial methyltransferase
ar4r2_scaffold_206_58
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(83735..85519)
DNA (1785bp) protein (595aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
hypothetical protein n=1 Tax=Spirulina subsalsa RepID=UPI00031B0E85
signal transduction histidine kinase
ar4r2_scaffold_206_59
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(85708..86163)
DNA (456bp) protein (152aa)
Conserved repeat protein (Fragment) n=1 Tax=Beggiatoa alba B18LD RepID=I3CHM3_9GAMM
Conserved repeat protein {ECO:0000313|EMBL:EIJ43116.1}; Flags: Fragment;; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
Displaying items 31-60 of 61 in total

View Taxonomy