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ar4r2_scaffold_2153

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_2153_1
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(145..933)
DNA (789bp) protein (263aa)
Outer membrane protein assembly factor BamD n=1 Tax=Beggiatoa alba B18LD RepID=I3CKM0_9GAMM
competence protein ComL
Outer membrane protein assembly factor BamD {ECO:0000256|HAMAP-Rule:MF_00922}; Flags: Precursor;; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_2153_2
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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948..1904
DNA (957bp) protein (319aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
Pseudouridine synthase n=1 Tax=Beggiatoa sp. PS RepID=A7C390_9GAMM rbh
ribosomal large subunit pseudouridine synthase D
ar4r2_scaffold_2153_3
unknown

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comp(1948..2604)
DNA (657bp) protein (219aa)

This feature has no annotations

ar4r2_scaffold_2153_4
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2779..3924
DNA (1146bp) protein (382aa)
D-alanyl-D-alanine carboxypeptidase n=1 Tax=Beggiatoa alba B18LD RepID=I3CCK2_9GAMM rbh
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:EIJ41345.1}; Flags: Precursor;; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
D-alanyl-D-alanine carboxypeptidase
ar4r2_scaffold_2153_5
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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3928..4932
DNA (1005bp) protein (335aa)
Type II secretion system protein n=1 Tax=Beggiatoa sp. PS RepID=A7BU80_9GAMM rbh
Type II secretion system protein {ECO:0000313|EMBL:EDN69907.1}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
type II secretion system protein
ar4r2_scaffold_2153_6
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4951..6246
DNA (1296bp) protein (432aa)
Putative uncharacterized protein n=1 Tax=Beggiatoa sp. PS RepID=A7BRK5_9GAMM rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAP55137.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_2153_7
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6373..8820)
DNA (2448bp) protein (816aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
Lon protease n=1 Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=D3RR84_ALLVD rbh
ATP-dependent Lon protease
ar4r2_scaffold_2153_8
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

comp(9232..9621)
DNA (390bp) protein (130aa)
Putative phosphotyrosine protein phosphatase n=1 Tax=Oleispira antarctica RB-8 RepID=R4YJR2_OLEAN
protein-tyrosine phosphatase
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
ar4r2_scaffold_2153_9
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9631..10704)
DNA (1074bp) protein (358aa)
Arsenical pump membrane protein n=1 Tax=Beggiatoa sp. PS RepID=A7C1A7_9GAMM rbh
Arsenical pump membrane protein {ECO:0000313|EMBL:EDN67428.1}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
arsenical pump membrane protein
ar4r2_scaffold_2153_10
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10711..10977)
DNA (267bp) protein (89aa)
Glutaredoxin {ECO:0000313|EMBL:KHD06970.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
thiol-disulfide isomerase id=12498539 bin=THIO_MID species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
thiol-disulfide isomerase
ar4r2_scaffold_2153_11
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10989..11942)
DNA (954bp) protein (318aa)
Putative uncharacterized protein n=1 Tax=Thiocapsa marina 5811 RepID=F9UBS5_9GAMM rbh
Permease {ECO:0000313|EMBL:KHD03653.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
permease
ar4r2_scaffold_2153_12
Capitella teleta, Capitella, Capitellida, Scolecida, Annelida, Metazoa

Not on your lists

comp(11935..12282)
DNA (348bp) protein (116aa)
Uncharacterized protein (Fragment) n=2 Tax=Capitella teleta RepID=R7TI53_CAPTE
Uncharacterized protein {ECO:0000313|EMBL:ELT93399.1, ECO:0000313|EnsemblMetazoa:CapteP146600}; Flags: Fragment;; TaxID=283909 species="Eukaryota; Metazoa; Lophotrochozoa; Annelida; Polychaeta; Scolecida; Capitellida; Capitellidae; Capitella.;" source="Capitella teleta (Polychaete worm).;"
HTH-type transcriptional regulator, ArsR family
ar4r2_scaffold_2153_13
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12450..14648
DNA (2199bp) protein (733aa)
Membrane carboxypeptidase/penicillin-binding protein PbpC n=1 Tax=Beggiatoa alba B18LD RepID=I3CCV3_9GAMM rbh
glycosyl transferase
Glycosyl transferase {ECO:0000313|EMBL:BAP57782.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_2153_14
BJP_IG2157_Anaerolineales_55_23, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

comp(14734..15687)
DNA (954bp) protein (318aa)
Uncharacterized protein n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9AYB3_HERA2 rbh
hypothetical protein rbh
Tax=BJP_IG2157_Anaerolineales_55_23
ar4r2_scaffold_2153_15
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15926..17206)
DNA (1281bp) protein (427aa)
Folylpolyglutamate synthase/dihydrofolate synthase n=1 Tax=Beggiatoa sp. PS RepID=A7C245_9GAMM rbh
dihydrofolate synthase / folylpolyglutamate synthase
Dihydrofolate synthase / folylpolyglutamate synthase {ECO:0000313|EMBL:BAP54891.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_2153_16
Methylomonas denitrificans, Methylomonas, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17226..18278
DNA (1053bp) protein (351aa)
ABC transporter permease n=1 Tax=Leucothrix mucor RepID=UPI0003B5D39A rbh
Hemin ABC transporter permease {ECO:0000313|EMBL:KHD33577.1}; TaxID=1538553 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomonas.;" source="Methylomonas denitrificans.;"
transport system permease rbh
ar4r2_scaffold_2153_17
unknown

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comp(18311..18505)
DNA (195bp) protein (65aa)

This feature has no annotations

ar4r2_scaffold_2153_18
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(18885..19910)
DNA (1026bp) protein (342aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=endosymbiont of Tevnia jerichonana (vent Tica) RepID=G2FCP8_9GAMM rbh
phenylalanyl-tRNA synthetase, alpha chain
ar4r2_scaffold_2153_19
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20018..21196)
DNA (1179bp) protein (393aa)
pgk; phosphoglycerate kinase (EC:2.7.2.3) rbh
Phosphoglycerate kinase {ECO:0000255|HAMAP-Rule:MF_00145}; EC=2.7.2.3 {ECO:0000255|HAMAP-Rule:MF_00145};; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
phosphoglycerate kinase n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00037FD6BA rbh
ar4r2_scaffold_2153_20
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21508..22764
DNA (1257bp) protein (419aa)
Gamma-glutamyl phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00054156}; Short=GPR {ECO:0000256|HAMAP-Rule:MF_00412};; EC=1.2.1.41 {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00186003};; Glutamate-5-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; Glutamyl-gamma-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
Gamma-glutamyl phosphate reductase n=1 Tax=Beggiatoa alba B18LD RepID=I3CEI9_9GAMM rbh
gamma-glutamyl phosphate reductase
Displaying 20 items

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