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ar4r2_scaffold_1274

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_1274_1
Chroococcidiopsis thermalis, Chroococcidiopsis, Pleurocapsales, Cyanobacteria, Bacteria

Not on your lists

comp(3..221)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Chroococcidiopsis thermalis PCC 7203 RepID=K9U2Z2_9CYAN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFY89190.1}; TaxID=251229 species="Bacteria; Cyanobacteria; Pleurocapsales; Chroococcidiopsis.;" source="Chroococcidiopsis thermalis PCC 7203.;"
ar4r2_scaffold_1274_2
unknown

Not on your lists

comp(273..431)
DNA (159bp) protein (53aa)

This feature has no annotations

ar4r2_scaffold_1274_3
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

674..2485
DNA (1812bp) protein (604aa)
Fused permease/ATPase component of ABC transporter involved in Fe-S cluster assembly n=1 Tax=Beggiatoa alba B18LD RepID=I3CF95_9GAMM rbh
Metal ABC transporter permease {ECO:0000313|EMBL:KHD11934.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
metal ABC transporter permease
ar4r2_scaffold_1274_4
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2610..4283)
DNA (1674bp) protein (558aa)
Uncharacterized protein n=1 Tax=Beggiatoa alba B18LD RepID=I3CC63_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAP55716.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_1274_5
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4473..5855
DNA (1383bp) protein (461aa)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133};; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
tryptophan synthase subunit beta n=1 Tax=Arhodomonas aquaeolei RepID=UPI000377B204 rbh
tryptophan synthase subunit beta
ar4r2_scaffold_1274_6
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5926..7143
DNA (1218bp) protein (406aa)
Glycosyl transferase, group 1 family protein n=1 Tax=Beggiatoa sp. PS RepID=A7C386_9GAMM rbh
glycosyl transferase group 1 family protein
Glycosyl transferase group 1 family protein {ECO:0000313|EMBL:BAP56937.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_1274_7
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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7409..8671
DNA (1263bp) protein (421aa)
3-deoxy-D-manno-octulosonic-acid (KDO) transferase {ECO:0000313|EMBL:EDN70905.1}; EC=2.-.-.- {ECO:0000313|EMBL:EDN70905.1};; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
3-deoxy-D-manno-octulosonic-acid (KDO) transferase n=1 Tax=Beggiatoa sp. PS RepID=A7BRC2_9GAMM rbh
3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein
ar4r2_scaffold_1274_8
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8642..9898)
DNA (1257bp) protein (419aa)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
Diaminopimelate decarboxylase n=1 Tax=Beggiatoa sp. PS RepID=A7BZP9_9GAMM rbh
diaminopimelate decarboxylase
ar4r2_scaffold_1274_9
unknown

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comp(9913..10023)
DNA (111bp) protein (37aa)

This feature has no annotations

ar4r2_scaffold_1274_10
Candidatus Xenolissoclinum pacificiensis, Candidatus Xenolissoclinum, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10167..12098)
DNA (1932bp) protein (644aa)
Uncharacterized protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G1N7_9DELT
Uncharacterized protein {ECO:0000313|EMBL:ETO91763.1}; TaxID=1401685 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Candidatus Xenolissoclinum.;" source="Candidatus Xenolissoclinum pacificiensis L6.;"
ar4r2_scaffold_1274_11
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12456..13199
DNA (744bp) protein (248aa)
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE {ECO:0000256|HAMAP-Rule:MF_01813}; EC=2.1.1.163 {ECO:0000256|HAMAP-Rule:MF_01813};; EC=2.1.1.201 {ECO:0000256|HAMAP-Rule:MF_01813};; 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase {ECO:0000256|HAMAP-Rule:MF_01813}; Demethylmenaquinone methyltransferase {ECO:0000256|HAMAP-Rule:MF_01813}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE n=1 Tax=Beggiatoa alba B18LD RepID=I3CDP5_9GAMM rbh
UbiE/COQ5 methyltransferase
ar4r2_scaffold_1274_12
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13196..13672
DNA (477bp) protein (159aa)
Membrane protein n=1 Tax=Beggiatoa sp. PS RepID=A7C5W2_9GAMM
Membrane protein {ECO:0000313|EMBL:EDN65822.1}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
hypothetical protein
ar4r2_scaffold_1274_13
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13784..13963)
DNA (180bp) protein (60aa)
Uncharacterized protein {ECO:0000313|EMBL:KHD09190.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
ar4r2_scaffold_1274_14
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14146..15234)
DNA (1089bp) protein (363aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184173};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Beggiatoa sp. PS RepID=A7BX04_9GAMM rbh
IspG protein
ar4r2_scaffold_1274_15
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15246..15785)
DNA (540bp) protein (180aa)
hydrogenase n=1 Tax=Methylovulum miyakonense RepID=UPI000372323A
hydrogenase
Hydrogenase {ECO:0000313|EMBL:BAP55138.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_1274_16
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16165..17619
DNA (1455bp) protein (485aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Beggiatoa alba B18LD RepID=I3CG01_9GAMM rbh
aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A
ar4r2_scaffold_1274_17
Zymomonas mobilis, Zymomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17625..17930)
DNA (306bp) protein (102aa)
Uncharacterized protein n=2 Tax=Zymomonas mobilis subsp. mobilis RepID=D3G2G1_ZYMMO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADC33911.1}; TaxID=264203 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Zymomonas.;" source="Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4).;"
ar4r2_scaffold_1274_18
Cyanothece sp. PCC 7425, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(18037..18450)
DNA (414bp) protein (138aa)
DNA methylase N-4/N-6 domain protein n=1 Tax=Cyanothece sp. (strain PCC 7425 / ATCC 29141) RepID=B8HR98_CYAP4
DNA methylase N-4/N-6 domain-containing protein
DNA methylase N-4/N-6 domain protein {ECO:0000313|EMBL:ACL44086.1}; TaxID=395961 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanothece.;" source="Cyanothece sp. (strain PCC 7425 / ATCC 29141).;"
ar4r2_scaffold_1274_19
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18484..19506)
DNA (1023bp) protein (341aa)
Ferrochelatase {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607}; EC=4.99.1.1 {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607};; Heme synthase {ECO:0000256|HAMAP-Rule:MF_00323}; Protoheme ferro-lyase {ECO:0000256|HAMAP-Rule:MF_00323}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
Ferrochelatase n=1 Tax=Beggiatoa sp. PS RepID=A7C270_9GAMM rbh
ferrochelatase
ar4r2_scaffold_1274_20
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19496..20137)
DNA (642bp) protein (214aa)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216328}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216337};; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
pyrE; orotate phosphoribosyltransferase (EC:2.4.2.10)
Orotate phosphoribosyltransferase n=1 Tax=Beggiatoa alba B18LD RepID=I3CER0_9GAMM rbh
ar4r2_scaffold_1274_21
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20428..20808
DNA (381bp) protein (127aa)
Aspartate 1-decarboxylase {ECO:0000256|HAMAP-Rule:MF_00446, ECO:0000256|SAAS:SAAS00097809}; EC=4.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00446, ECO:0000256|SAAS:SAAS00097718};; Aspartate alpha-decarboxylase {ECO:0000256|HAMAP-Rule:MF_00446}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
Aspartate 1-decarboxylase n=1 Tax=Beggiatoa sp. PS RepID=A7BTY6_9GAMM
aspartate 1-decarboxylase
ar4r2_scaffold_1274_22
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20868..22094)
DNA (1227bp) protein (409aa)
Type II secretory pathway, component PulF n=1 Tax=Beggiatoa alba B18LD RepID=I3CJL3_9GAMM rbh
Type II secretory pathway, component PulF {ECO:0000313|EMBL:EIJ43806.1}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
type IV fimbrial assembly protein pilC
ar4r2_scaffold_1274_23
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22128..23861)
DNA (1734bp) protein (578aa)
Type IV-A pilus assembly ATPase PilB n=1 Tax=Beggiatoa alba B18LD RepID=I3CJL4_9GAMM rbh
type II secretory protein GspE
Type II secretory protein GspE {ECO:0000313|EMBL:BAP56275.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_1274_24
RBG_16_Gammaproteobacteria_57_12_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23930..24517)
DNA (588bp) protein (196aa)
Anthranilate synthase, amidotransferase component (EC:2.6.1.85 4.1.3.27)
anthranilate synthase subunit II n=1 Tax=Marinobacterium rhizophilum RepID=UPI00036E602B rbh
Tax=RBG_16_Gammaproteobacteria_57_12_curated
Displaying 24 items

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