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ar4r2_scaffold_1235

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_1235_1
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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361..1296
DNA (936bp) protein (312aa)
Membrane protease subunit, stomatin/prohibitin n=1 Tax=Beggiatoa alba B18LD RepID=I3CE72_9GAMM rbh
Membrane protease subunit, stomatin/prohibitin {ECO:0000313|EMBL:EIJ41915.1}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
hypothetical protein rbh
ar4r2_scaffold_1235_2
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1310..1765
DNA (456bp) protein (152aa)
Membrane protein implicated in regulation of membrane protease activity n=1 Tax=Beggiatoa alba B18LD RepID=I3CE73_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KHD05021.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
conserved membrane protein of unknown function
ar4r2_scaffold_1235_3
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1789..2235
DNA (447bp) protein (149aa)
Rhodanese-like protein n=1 Tax=Beggiatoa sp. PS RepID=A7C3N1_9GAMM
rhodanese-like protein
Rhodanese-like protein {ECO:0000313|EMBL:BAP56099.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_1235_trna_2
unknown

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comp(2679..2751)
DNA (73bp)
transferRNA Thr
ar4r2_scaffold_1235_4
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2890..3975
DNA (1086bp) protein (362aa)
TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component n=1 Tax=Beggiatoa alba B18LD RepID=I3CK95_9GAMM rbh
TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component {ECO:0000313|EMBL:EIJ44038.1}; Flags: Precursor;; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
TRAP dicarboxylate transporter subunit DctP rbh
ar4r2_scaffold_1235_5
unknown

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3972..4109
DNA (138bp) protein (46aa)

This feature has no annotations

ar4r2_scaffold_1235_6
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4351..5265
DNA (915bp) protein (305aa)
Oxygen-dependent coproporphyrinogen-III oxidase {ECO:0000256|HAMAP-Rule:MF_00333}; Short=CPO {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coprogen oxidase {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coproporphyrinogenase {ECO:0000256|HAMAP-Rule:MF_00333};; EC=1.3.3.3 {ECO:0000256|HAMAP-Rule:MF_00333};; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
coproporphyrinogen III oxidase (EC:1.3.3.3) rbh
Coproporphyrinogen-III oxidase, aerobic n=1 Tax=Beggiatoa sp. PS RepID=A7BUZ6_9GAMM rbh
ar4r2_scaffold_1235_7
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5319..8768)
DNA (3450bp) protein (1150aa)
Uncharacterized protein n=1 Tax=Beggiatoa alba B18LD RepID=I3CDU3_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:BAP56354.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
hypothetical protein
ar4r2_scaffold_1235_8
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8884..9123)
DNA (240bp) protein (80aa)
hypothetical protein n=1 Tax=zeta proteobacterium SCGC AB-604-B04 RepID=UPI0003611D5D
hypothetical protein
Tax=RBG_16_Betaproteobacteria_56_24_curated
ar4r2_scaffold_1235_9
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9149..9586)
DNA (438bp) protein (146aa)
Putative uncharacterized protein n=1 Tax=Beggiatoa sp. PS RepID=A7C235_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAP54677.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_1235_trna_1
unknown

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comp(9597..9671)
DNA (75bp)
transferRNA Arg
ar4r2_scaffold_1235_10
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9989..11134
DNA (1146bp) protein (382aa)
Chaperone protein DnaJ n=1 Tax=Beggiatoa sp. PS RepID=A7BR59_9GAMM rbh
DnaJ-class molecular chaperone with C-terminal Zn finger domain
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_1235_11
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11143..11946
DNA (804bp) protein (268aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Beggiatoa sp. PS RepID=A7BR58_9GAMM rbh
dihydrodipicolinate reductase
ar4r2_scaffold_1235_12
Vibrio alginolyticus, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12567..13961
DNA (1395bp) protein (465aa)
Putative uncharacterized protein n=1 Tax=Vibrio alginolyticus 40B RepID=D0X354_VIBAL
Uncharacterized protein {ECO:0000313|EMBL:EEZ81274.1}; TaxID=674977 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio alginolyticus 40B.;"
hypothetical protein
ar4r2_scaffold_1235_13
unknown

Not on your lists

13984..14562
DNA (579bp) protein (193aa)

This feature has no annotations

ar4r2_scaffold_1235_14
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14556..15905
DNA (1350bp) protein (450aa)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00834}; EC=2.6.1.62 {ECO:0000256|HAMAP-Rule:MF_00834};; 7,8-diamino-pelargonic acid aminotransferase {ECO:0000256|HAMAP-Rule:MF_00834}; 7,8-diaminononanoate synthase {ECO:0000256|HAMAP-Rule:MF_00834}; Diaminopelargonic acid synthase {ECO:0000256|HAMAP-Rule:MF_00834}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase n=1 Tax=Beggiatoa alba B18LD RepID=I3CJG4_9GAMM rbh
adenosylmethionine-8-amino-7-oxononanoate aminotransferase
ar4r2_scaffold_1235_15
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15896..16369)
DNA (474bp) protein (158aa)
Conserved hypothetical membrane spanning protein n=1 Tax=Glaciecola arctica BSs20135 RepID=K6XC94_9ALTE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAP56827.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_1235_16
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16461..17822
DNA (1362bp) protein (454aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084542}; EC=6.3.2.9 {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084342};; D-glutamic acid-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00639}; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase {ECO:0000256|HAMAP-Rule:MF_00639}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
UDP-N-acetylmuramoylalanine--D-glutamate ligase n=1 Tax=Beggiatoa alba B18LD RepID=I3CFA1_9GAMM rbh
UDP-N-acetylmuramoylalanine--D-glutamate ligase
ar4r2_scaffold_1235_17
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17921..18523)
DNA (603bp) protein (201aa)
Chaperone protein DnaK n=1 Tax=Beggiatoa sp. PS RepID=A7BR60_9GAMM
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
molecular chaperone DnaK
Displaying 19 items

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