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ar4r2_scaffold_1118

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_1118_1
unknown

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comp(12..167)
DNA (156bp) protein (52aa)

This feature has no annotations

ar4r2_scaffold_1118_2
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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1161..2024
DNA (864bp) protein (288aa)
RNA polymerase sigma factor RpoH n=1 Tax=Beggiatoa alba B18LD RepID=I3CI44_9GAMM rbh
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
RNA polymerase sigma 70
ar4r2_scaffold_1118_3
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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comp(2077..2757)
DNA (681bp) protein (227aa)
7-carboxy-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_00917}; Short=CDG synthase {ECO:0000256|HAMAP-Rule:MF_00917};; EC=4.3.99.3 {ECO:0000256|HAMAP-Rule:MF_00917};; Queuosine biosynthesis protein QueE {ECO:0000256|HAMAP-Rule:MF_00917}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
radical SAM protein n=1 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B37053
radical SAM domain-containing protein
ar4r2_scaffold_1118_4
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2754..3167)
DNA (414bp) protein (138aa)
6-carboxy-5,6,7,8-tetrahydropterin synthase {ECO:0000256|PIRNR:PIRNR006113}; EC=4.-.-.- {ECO:0000256|PIRNR:PIRNR006113};; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
6-carboxy-5,6,7,8-tetrahydropterin synthase n=1 Tax=Beggiatoa sp. PS RepID=A7BS03_9GAMM
6-pyruvoyl-tetrahydropterin synthase
ar4r2_scaffold_1118_5
Methylobacter tundripaludum, Methylobacter, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3186..4013)
DNA (828bp) protein (276aa)
2-dehydro-3-deoxyphosphooctonate aldolase {ECO:0000256|HAMAP-Rule:MF_00056, ECO:0000256|SAAS:SAAS00078566}; EC=2.5.1.55 {ECO:0000256|HAMAP-Rule:MF_00056, ECO:0000256|SAAS:SAAS00078538};; 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00056}; KDO-8-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00056}; Phospho-2-dehydro-3-deoxyoctonate aldolase {ECO:0000256|HAMAP-Rule:MF_00056}; TaxID=697282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylobacter.;" source="Methylobacter tundripaludum SV96.;"
2-dehydro-3-deoxyphosphooctonate aldolase n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3J1L6_9GAMM rbh
2-dehydro-3-deoxyphosphooctonate aldolase rbh
ar4r2_scaffold_1118_6
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4986..7268)
DNA (2283bp) protein (761aa)
ATP-dependent Clp protease ATP-binding subunit clpA n=1 Tax=Beggiatoa alba B18LD RepID=I3CG12_9GAMM rbh
ATP-dependent Clp protease ATP-binding subunit clpA {ECO:0000313|EMBL:EIJ42555.1}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
ATP-dependent Clp protease ATP-binding protein
ar4r2_scaffold_1118_7
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7475..7795)
DNA (321bp) protein (107aa)
ATP-dependent Clp protease adapter protein ClpS n=1 Tax=Beggiatoa sp. PS RepID=A7BUX7_9GAMM
ATP-dependent Clp protease adapter protein ClpS {ECO:0000256|HAMAP-Rule:MF_00302}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
hypothetical protein
ar4r2_scaffold_1118_8
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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8059..9951
DNA (1893bp) protein (631aa)
ATPase component of ABC transporters with duplicated ATPase domain n=1 Tax=Beggiatoa alba B18LD RepID=I3CJR9_9GAMM rbh
ABC transporter ATPase {ECO:0000313|EMBL:KHD13206.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
heme ABC transporter ATPase
ar4r2_scaffold_1118_9
GWF2_OD1_44_8_partial, Parcubacteria, Bacteria

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comp(10247..11341)
DNA (1095bp) protein (365aa)
Secreted protein n=1 Tax=Beggiatoa sp. PS RepID=A7BUT3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KKT78827.1}; TaxID=1618971 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_44_8.;"
ar4r2_scaffold_1118_10
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11586..13658)
DNA (2073bp) protein (691aa)
Glycosyl transferase, family 2 n=1 Tax=alpha proteobacterium BAL199 RepID=A8TRL3_9PROT
Glycosyl transferase, family 2 {ECO:0000313|EMBL:EDP64562.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
hypothetical protein
ar4r2_scaffold_1118_11
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13659..14387)
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TRL4_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EDP64563.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
ar4r2_scaffold_1118_12
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14567..15010)
DNA (444bp) protein (148aa)
Putative uncharacterized protein n=1 Tax=Thiocapsa roseopersicina RepID=Q3MKN7_THIRO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAP55363.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_1118_13
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15023..15658)
DNA (636bp) protein (212aa)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
Imidazole glycerol phosphate synthase subunit HisH n=1 Tax=Beggiatoa sp. PS RepID=A7BZ25_9GAMM rbh
imidazole glycerol phosphate synthase subunit HisH
ar4r2_scaffold_1118_14
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15658..16251)
DNA (594bp) protein (198aa)
Imidazoleglycerol-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599}; Short=IGPD {ECO:0000256|HAMAP-Rule:MF_00076};; EC=4.2.1.19 {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599};; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
Imidazoleglycerol-phosphate dehydratase n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JXC2_9GAMM rbh
hisB; imidazoleglycerol-phosphate dehydratase rbh
ar4r2_scaffold_1118_15
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16262..16711)
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Beggiatoa alba B18LD RepID=I3CIT5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIJ43528.1}; Flags: Precursor;; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
hypothetical protein
ar4r2_scaffold_1118_16
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(16798..18135)
DNA (1338bp) protein (446aa)
ATP-dependent protease ATPase subunit HslU n=1 Tax=Beggiatoa alba B18LD RepID=I3CL47_9GAMM rbh
ATP-dependent protease ATP-binding subunit HslU
ATP-dependent protease ATPase subunit HslU {ECO:0000256|HAMAP-Rule:MF_00249, ECO:0000256|SAAS:SAAS00089650}; Unfoldase HslU {ECO:0000256|HAMAP-Rule:MF_00249}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_1118_17

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comp(18153..18698)
DNA (546bp) protein (182aa)
ATP-dependent protease subunit HslV n=1 Tax=Methylophaga thiooxydans DMS010 RepID=C0N4D7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KKM86906.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
ATP-dependent protease HslV
ar4r2_scaffold_1118_18
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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18917..19114
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Beggiatoa alba B18LD RepID=I3CFQ3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIJ42446.1}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
hypothetical protein
ar4r2_scaffold_1118_19
unknown

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20200..20373
DNA (174bp) protein (58aa)

This feature has no annotations

Displaying 19 items

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