ggKbase home page

ar4r2_scaffold_474

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_474_1
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..667
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Methylosarcina fibrata RepID=UPI0003632540
Uncharacterized protein {ECO:0000313|EMBL:KHD05666.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
hypothetical protein
ar4r2_scaffold_474_2
unknown

Not on your lists

comp(887..1126)
DNA (240bp) protein (80aa)

This feature has no annotations

ar4r2_scaffold_474_3
unknown

Not on your lists

comp(1113..1412)
DNA (300bp) protein (100aa)

This feature has no annotations

ar4r2_scaffold_474_4
unknown

Not on your lists

1929..2255
DNA (327bp) protein (109aa)

This feature has no annotations

ar4r2_scaffold_474_5
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2524..3291)
DNA (768bp) protein (256aa)
Putative ATPase of the PP-loop superfamily implicated in cell cycle control n=1 Tax=Beggiatoa alba B18LD RepID=I3CE71_9GAMM rbh
Putative ATPase of the PP-loop superfamily implicated in cell cycle control {ECO:0000313|EMBL:EIJ41914.1}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
ATPase of the PP-loop superfamily implicated in cell cycle control
ar4r2_scaffold_474_6
Calothrix parietina, Calothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

3403..5244
DNA (1842bp) protein (614aa)
Protein serine/threonine phosphatase with extracellular sensor n=1 Tax=Calothrix sp. PCC 6303 RepID=K9V905_9CYAN rbh
protein serine/threonine phosphatase with extracellular sensor rbh
Protein serine/threonine phosphatase with extracellular sensor {ECO:0000313|EMBL:AFZ04336.1}; Flags: Precursor;; TaxID=1170562 species="Bacteria; Cyanobacteria; Nostocales; Rivulariaceae; Calothrix.;" source="Calothrix sp. PCC 6303.;"
ar4r2_scaffold_474_7
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5368..9177
DNA (3810bp) protein (1270aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
Signal transduction histidine kinase n=1 Tax=Beggiatoa alba B18LD RepID=I3CIF7_9GAMM
signal transduction histidine kinase
ar4r2_scaffold_474_8
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9189..12650
DNA (3462bp) protein (1154aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
Transcription-repair-coupling factor n=1 Tax=Beggiatoa alba B18LD RepID=I3CCV6_9GAMM rbh
transcription-repair coupling factor Mfd
ar4r2_scaffold_474_9

Not on your lists

12659..13243
DNA (585bp) protein (195aa)
TPR repeat-containing protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D7C4_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKM94879.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
TPR repeat-containing protein
ar4r2_scaffold_474_10
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13303..14757
DNA (1455bp) protein (485aa)
hypothetical protein n=1 Tax=Synechococcus sp. PCC 7336 RepID=UPI00034B707D
O-linked N-acetylglucosamine transferase, SPINDLY family
O-linked N-acetylglucosamine transferase, SPINDLY family {ECO:0000313|EMBL:BAP55002.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_474_11
Acinetobacter sp. ANC 3880, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15105..15740
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Acinetobacter sp. ANC 3880 RepID=N9SZL2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ENX56505.1}; TaxID=1217701 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.;" source="Acinetobacter sp. ANC 3880.;"
FkbM family methyltransferase
ar4r2_scaffold_474_12
RBG_13_Deltaproteobacteria_47_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16614..17168
DNA (555bp) protein (185aa)
Uncharacterized protein id=4819230 bin=GWC2_Syntrophus__56_31 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
Tax=RBG_13_Deltaproteobacteria_47_9_curated
ar4r2_scaffold_474_13
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17187..19298
DNA (2112bp) protein (704aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Beggiatoa alba B18LD RepID=I3CDI4_9GAMM rbh
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EIJ41677.1}; Flags: Precursor;; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
ar4r2_scaffold_474_14
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19356..21521)
DNA (2166bp) protein (722aa)
TonB-dependent receptor n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C0Z8_NITHN
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:ADE14555.1}; Flags: Precursor;; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
ar4r2_scaffold_474_15
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22122..22958)
DNA (837bp) protein (279aa)
metH; Methionine synthase (EC:2.1.1.13)
5-methyltetrahydrofolate--homocysteine methyltransferase n=1 Tax=Caenispirillum salinarum AK4 RepID=K9HHX9_9PROT
5-methyltetrahydrofolate--homocysteine methyltransferase {ECO:0000313|EMBL:EKV28216.1}; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
ar4r2_scaffold_474_16
Arthrospira platensis, Arthrospira, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(23134..25899)
DNA (2766bp) protein (922aa)
Putative uncharacterized protein n=2 Tax=Arthrospira platensis RepID=D5A490_ARTPN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAI89384.1}; TaxID=696747 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Arthrospira.;" source="Arthrospira platensis (strain NIES-39 / IAM M-135) (Spirulina; platensis).;"
ar4r2_scaffold_474_17
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26464..27789)
DNA (1326bp) protein (442aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Beggiatoa alba B18LD RepID=I3CEJ4_9GAMM rbh
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
dnaA; chromosome replication initiator DnaA rbh
ar4r2_scaffold_474_18
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


28195..28329
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=1 Tax=Rhodovulum sp. PH10 RepID=J9DEH8_9RHOB
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|SAAS:SAAS00020245}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
rpmH; 50S ribosomal protein L34
ar4r2_scaffold_474_19
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28329..28694
DNA (366bp) protein (122aa)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
rnpA; ribonuclease P protein component (EC:3.1.26.5)
Ribonuclease P protein component n=1 Tax=Beggiatoa alba B18LD RepID=I3CEJ6_9GAMM
ar4r2_scaffold_474_20
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28679..28906
DNA (228bp) protein (76aa)
Putative membrane protein insertion efficiency factor n=1 Tax=Beggiatoa sp. PS RepID=A7C0B2_9GAMM
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
hypothetical protein
ar4r2_scaffold_474_21
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28909..30597
DNA (1689bp) protein (563aa)
Membrane protein insertase YidC n=1 Tax=Beggiatoa alba B18LD RepID=I3CEJ7_9GAMM rbh
Membrane protein insertase YidC {ECO:0000256|HAMAP-Rule:MF_01810, ECO:0000256|SAAS:SAAS00003942}; Foldase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane integrase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane protein YidC {ECO:0000256|HAMAP-Rule:MF_01810}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
60Kd inner membrane protein
ar4r2_scaffold_474_22
Helicobacter pylori, Helicobacter, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

30721..31197
DNA (477bp) protein (159aa)
Endonuclease MjaVIP {ECO:0000313|EMBL:EJB83164.1}; EC=3.1.21.4 {ECO:0000313|EMBL:EJB83164.1};; TaxID=992061 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter.;" source="Helicobacter pylori Hp H-6.;"
hypothetical protein n=1 Tax=Helicobacter pylori RepID=UPI0002BA36E5
hypothetical protein
ar4r2_scaffold_474_23
Helicobacter sp. MIT 11-5569, Helicobacter, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

31182..31406
DNA (225bp) protein (75aa)
Putative endonuclease MjaVIP n=1 Tax=Helicobacter pylori CPY1662 RepID=M7S4D7_HELPX
Endonuclease MjaVIP {ECO:0000313|EMBL:KGL11243.1}; TaxID=1548151 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter.;" source="Helicobacter sp. MIT 11-5569.;"
Endonuclease MjaVIP
ar4r2_scaffold_474_24
Cyanothece sp. PCC 7424, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

31416..32270
DNA (855bp) protein (285aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=65393 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanothece.;" source="Cyanothece sp. (strain PCC 7424) (Synechococcus sp. (strain ATCC; 29155)).;"
DNA methylase N-4/N-6 domain protein n=1 Tax=Cyanothece sp. (strain PCC 7424) RepID=B7KLJ0_CYAP7 rbh
DNA methylase N-4/N-6 domain-containing protein rbh
ar4r2_scaffold_474_25
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32368..33336
DNA (969bp) protein (323aa)
Proline iminopeptidase {ECO:0000256|RuleBase:RU003421}; EC=3.4.11.5 {ECO:0000256|RuleBase:RU003421};; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
Proline iminopeptidase n=1 Tax=Beggiatoa alba B18LD RepID=I3CKL4_9GAMM rbh
proline iminopeptidase
ar4r2_scaffold_474_26
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33422..34198
DNA (777bp) protein (259aa)
Pimeloyl-[acyl-carrier protein] methyl ester esterase {ECO:0000256|HAMAP-Rule:MF_01260, ECO:0000256|SAAS:SAAS00064125}; EC=3.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01260, ECO:0000256|SAAS:SAAS00064111};; Biotin synthesis protein BioH {ECO:0000256|HAMAP-Rule:MF_01260}; Carboxylesterase BioH {ECO:0000256|HAMAP-Rule:MF_01260}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
Pimelyl-[acyl-carrier protein] methyl ester esterase n=1 Tax=Beggiatoa alba B18LD RepID=I3CL23_9GAMM
pimelyl-[acyl-carrier protein] methyl ester esterase
ar4r2_scaffold_474_27
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34176..35033
DNA (858bp) protein (286aa)
Malonyl-[acyl-carrier protein] O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00835, ECO:0000256|SAAS:SAAS00055581}; Short=Malonyl-ACP O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00835};; EC=2.1.1.197 {ECO:0000256|HAMAP-Rule:MF_00835, ECO:0000256|SAAS:SAAS00055581};; Biotin synthesis protein BioC {ECO:0000256|HAMAP-Rule:MF_00835}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
Malonyl-[acyl-carrier protein] O-methyltransferase n=1 Tax=Beggiatoa alba B18LD RepID=I3CL22_9GAMM
methylase involved in ubiquinone/menaquinone biosynthesis
ar4r2_scaffold_474_28
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35030..35734
DNA (705bp) protein (235aa)
ATP-dependent dethiobiotin synthetase BioD {ECO:0000256|HAMAP-Rule:MF_00336}; EC=6.3.3.3 {ECO:0000256|HAMAP-Rule:MF_00336};; DTB synthetase {ECO:0000256|HAMAP-Rule:MF_00336}; Dethiobiotin synthase {ECO:0000256|HAMAP-Rule:MF_00336}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ATP-dependent dethiobiotin synthetase BioD n=1 Tax=Beggiatoa sp. PS RepID=A7C1V9_9GAMM
dethiobiotin synthase
ar4r2_scaffold_474_29
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35727..36956)
DNA (1230bp) protein (410aa)
Copper-binding periplasmic protein n=1 Tax=endosymbiont of Tevnia jerichonana (vent Tica) RepID=G2FC83_9GAMM rbh
copper ABC transporter substrate-binding protein
Copper ABC transporter substrate-binding protein {ECO:0000313|EMBL:BAP57185.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_474_30
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36962..37918)
DNA (957bp) protein (319aa)
Uncharacterized protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RJ65_ACCPU
Uncharacterized protein {ECO:0000313|EMBL:KHD04556.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
hypothetical protein
Displaying items 1-30 of 43 in total

View Taxonomy