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ar4r2_scaffold_661

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_661_1

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3..527
DNA (525bp) protein (175aa)
Transposase n=1 Tax=Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z) RepID=G4SUQ6_META2
Marine sediment metagenome DNA, contig: S01H1_L04945 {ECO:0000313|EMBL:GAF73392.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
transposase
ar4r2_scaffold_661_2
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(701..1375)
DNA (675bp) protein (225aa)
ErfK/YbiS/YcfS/YnhG family protein n=1 Tax=Beggiatoa sp. PS RepID=A7BV72_9GAMM
ErfK/YbiS/YcfS/YnhG family protein {ECO:0000313|EMBL:EDN69560.1}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
ErfK/YbiS/YcfS/YnhG family protein
ar4r2_scaffold_661_3
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1479..2921)
DNA (1443bp) protein (481aa)
Glutamate synthase n=1 Tax=Beggiatoa sp. PS RepID=A7BR92_9GAMM rbh
Glutamate synthase {ECO:0000313|EMBL:EDN70935.1}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
glutamate synthase
ar4r2_scaffold_661_4
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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3296..3634
DNA (339bp) protein (113aa)
Rhodanese-like protein n=1 Tax=Beggiatoa sp. PS RepID=A7C5N3_9GAMM
Rhodanese-like protein {ECO:0000313|EMBL:EDN65901.1}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
rhodanese domain-containing protein
ar4r2_scaffold_661_5
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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3714..4607
DNA (894bp) protein (298aa)
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
Cysteine synthase B n=1 Tax=Beggiatoa alba B18LD RepID=I3CHJ2_9GAMM rbh
cysteine synthase B
ar4r2_scaffold_661_6
unknown

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5063..5368
DNA (306bp) protein (102aa)

This feature has no annotations

ar4r2_scaffold_661_7
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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5419..5853
DNA (435bp) protein (145aa)
OsmC-like protein n=1 Tax=Beggiatoa sp. PS RepID=A7BYI2_9GAMM
Peroxiredoxin {ECO:0000313|EMBL:KHD05492.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
OsmC family protein
ar4r2_scaffold_661_trna_1
unknown

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5968..6041
DNA (74bp)
transferRNA Met
ar4r2_scaffold_661_8
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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6107..6925
DNA (819bp) protein (273aa)
S-adenosylmethionine decarboxylase proenzyme {ECO:0000256|HAMAP-Rule:MF_00465, ECO:0000256|SAAS:SAAS00039304}; Short=AdoMetDC {ECO:0000256|HAMAP-Rule:MF_00465};; Short=SAMDC {ECO:0000256|HAMAP-Rule:MF_00465};; EC=4.1.1.50 {ECO:0000256|HAMAP-Rule:MF_00465, ECO:0000256|SAAS:SAAS00093036};; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
S-adenosylmethionine decarboxylase proenzyme n=1 Tax=Beggiatoa sp. PS RepID=A7BRD0_9GAMM rbh
S-adenosylmethionine decarboxylase
ar4r2_scaffold_661_9
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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7065..8225
DNA (1161bp) protein (387aa)
N5-carboxyaminoimidazole ribonucleotide synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; Short=N5-CAIR synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; EC=6.3.4.18 {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; 5-(carboxyamino)imidazole ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
Phosphoribosylaminoimidazole carboxylase, PurK protein n=1 Tax=Beggiatoa alba B18LD RepID=I3CD54_9GAMM rbh
phosphoribosylaminoimidazole carboxylase, ATPase subunit
ar4r2_scaffold_661_10
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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8216..8728
DNA (513bp) protein (171aa)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Beggiatoa sp. PS RepID=A7BS26_9GAMM
phosphoribosylaminoimidazole carboxylase catalytic subunit
ar4r2_scaffold_661_11
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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8902..9468
DNA (567bp) protein (189aa)
CDP-alcohol phosphatidyltransferase n=1 Tax=Beggiatoa sp. PS RepID=A7BQR1_9GAMM
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:KHD11298.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
ar4r2_scaffold_661_12
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9609..11747)
DNA (2139bp) protein (713aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
DNA/RNA helicase, superfamily I n=1 Tax=Beggiatoa alba B18LD RepID=I3CFX3_9GAMM rbh
DNA-dependent helicase
ar4r2_scaffold_661_13
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11892..15563)
DNA (3672bp) protein (1224aa)
Chemotaxis protein histidine kinase-like protein n=1 Tax=Beggiatoa alba B18LD RepID=I3CJF8_9GAMM rbh
Chemotaxis protein histidine kinase-like protein {ECO:0000313|EMBL:EIJ43751.1}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
chemotaxis protein histidine kinase-like protein
ar4r2_scaffold_661_14
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15604..17274)
DNA (1671bp) protein (557aa)
Hpt domain-containing protein n=1 Tax=Beggiatoa alba B18LD RepID=I3CJF9_9GAMM rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAP55581.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_661_15
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(17309..19390)
DNA (2082bp) protein (694aa)
Methyl-accepting chemotaxis protein n=1 Tax=Beggiatoa alba B18LD RepID=I3CJG0_9GAMM rbh
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:EIJ43753.1}; Flags: Precursor;; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
methyl-accepting chemotaxis protein
ar4r2_scaffold_661_16
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(19832..20392)
DNA (561bp) protein (187aa)
Chemotaxis signal transduction protein n=1 Tax=Beggiatoa alba B18LD RepID=I3CJG1_9GAMM
Chemotaxis signal transduction protein {ECO:0000313|EMBL:EIJ43754.1}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
chemotaxis signal transduction protein
ar4r2_scaffold_661_17
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(20458..20820)
DNA (363bp) protein (121aa)
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Beggiatoa alba B18LD RepID=I3CJG2_9GAMM
chemotaxis protein CheY
Chemotaxis protein CheY {ECO:0000313|EMBL:BAP55584.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_661_18
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(20838..21251)
DNA (414bp) protein (138aa)
Response regulator receiver domain protein n=1 Tax=Beggiatoa sp. PS RepID=A7C391_9GAMM
Response regulator receiver domain protein {ECO:0000313|EMBL:EDN66743.1}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
pilus response regulator PilG
ar4r2_scaffold_661_19
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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21775..23070
DNA (1296bp) protein (432aa)
Glutamate--cysteine ligase GshA n=1 Tax=Beggiatoa sp. PS RepID=A7C2E1_9GAMM rbh
glutamate--cysteine ligase GshA
Glutamate--cysteine ligase GshA {ECO:0000313|EMBL:BAP55587.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_661_20
Beggiatoa sp. SS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(23303..23611)
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI000376F692
Methyltransferase {ECO:0000313|EMBL:EDN72113.1}; TaxID=422288 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. SS.;"
putative methyltransferase
ar4r2_scaffold_661_21
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(23652..25019)
DNA (1368bp) protein (456aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
Two-component hybrid sensor and regulator n=1 Tax=Beggiatoa sp. PS RepID=A7BTK2_9GAMM
signal transduction histidine kinase
ar4r2_scaffold_661_22
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25530..27194)
DNA (1665bp) protein (555aa)
type II secretory pathway, component ExeA
Type II secretory pathway, component ExeA {ECO:0000313|EMBL:BAP56397.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
Type II secretory pathway, component ExeA (Predicted ATPase) id=4916107 bin=GWC2_Nitrospirae-rel_56_14 species=Beggiatoa alba genus=Beggiatoa taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA rbh
ar4r2_scaffold_661_trna_3
unknown

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comp(27678..27748)
DNA (71bp)
transferRNA Cys
ar4r2_scaffold_661_trna_2
unknown

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comp(27775..27847)
DNA (73bp)
transferRNA Gly
ar4r2_scaffold_661_23
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

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28158..28661
DNA (504bp) protein (168aa)
Uncharacterized protein n=2 Tax=Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6) RepID=D3VJN1_XENNA
Transposase {ECO:0000313|EMBL:CDH44240.1}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
Transposase
ar4r2_scaffold_661_24
Beggiatoa sp. SS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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28839..29534
DNA (696bp) protein (232aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01200, ECO:0000256|RuleBase:RU000512}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01200, ECO:0000256|RuleBase:RU000512};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01200}; TaxID=422288 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. SS.;"
Orotidine 5'-phosphate decarboxylase n=1 Tax=Beggiatoa sp. SS RepID=A7BM78_9GAMM
orotidine 5'-phosphate decarboxylase
ar4r2_scaffold_661_25
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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29552..30472
DNA (921bp) protein (307aa)
Methanol dehydrogenase regulatory protein MoxR n=1 Tax=Beggiatoa sp. PS RepID=A7C388_9GAMM rbh
Methanol dehydrogenase regulatory protein MoxR {ECO:0000313|EMBL:EDN66747.1}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
methanol dehydrogenase regulatory protein MoxR
ar4r2_scaffold_661_26
unknown

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31228..31299
DNA (72bp) protein (24aa)

This feature has no annotations

Displaying 29 items

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