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ar4r2_scaffold_1369

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_1369_1
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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17..436
DNA (420bp) protein (140aa)
General secretion pathway protein G n=1 Tax=Beggiatoa alba B18LD RepID=I3CCV4_9GAMM
general secretion pathway protein G
General secretion pathway protein G {ECO:0000313|EMBL:BAP55153.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_1369_2
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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796..1320
DNA (525bp) protein (175aa)
Transmembrane protein n=1 Tax=Beggiatoa sp. PS RepID=A7C4J5_9GAMM
Transmembrane protein {ECO:0000313|EMBL:EDN66289.1}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
hypothetical protein
ar4r2_scaffold_1369_3
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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1354..3537
DNA (2184bp) protein (728aa)
TonB-dependent receptor n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C0Z8_NITHN
Uncharacterized protein {ECO:0000313|EMBL:KHD04965.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
TonB-dependent receptor
ar4r2_scaffold_1369_4
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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3760..5949
DNA (2190bp) protein (730aa)
TonB-dependent receptor plug n=1 Tax=Nitrosococcus watsoni (strain C-113) RepID=D8K5B5_NITWC
Uncharacterized protein {ECO:0000313|EMBL:KHD04965.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
TonB-dependent receptor plug
ar4r2_scaffold_1369_5
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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6170..6883
DNA (714bp) protein (238aa)
Putative uncharacterized protein n=2 Tax=sulfur-oxidizing symbionts RepID=G2DAV5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KHD06060.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
hypothetical protein
ar4r2_scaffold_1369_6
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6911..7414
DNA (504bp) protein (168aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
Peptide deformylase n=2 Tax=sulfur-oxidizing symbionts RepID=G2DF75_9GAMM
peptide deformylase
ar4r2_scaffold_1369_7
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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7517..8437
DNA (921bp) protein (307aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
Methionyl-tRNA formyltransferase n=1 Tax=Beggiatoa alba B18LD RepID=I3CFD8_9GAMM rbh
methionyl-tRNA formyltransferase
ar4r2_scaffold_1369_8
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8509..10320)
DNA (1812bp) protein (604aa)
UvrABC system protein C n=1 Tax=Beggiatoa alba B18LD RepID=I3CEW1_9GAMM rbh
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; Flags: Precursor;; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
excinuclease ABC subunit C
ar4r2_scaffold_1369_9
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10346..10720)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Beggiatoa alba B18LD RepID=I3CEL5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIJ42058.1}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
hypothetical protein
ar4r2_scaffold_1369_10
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10747..11871)
DNA (1125bp) protein (375aa)
Putative GTPase, G3E family n=1 Tax=Beggiatoa alba B18LD RepID=I3CH27_9GAMM rbh
Putative GTPase, G3E family {ECO:0000313|EMBL:EIJ42920.1}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
putative GTPase, G3E family
ar4r2_scaffold_1369_11
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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12388..13728
DNA (1341bp) protein (447aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
PAS fold family n=1 Tax=Coleofasciculus chthonoplastes PCC 7420 RepID=B4VZF4_9CYAN
multi-sensor hybrid histidine kinase
ar4r2_scaffold_1369_12
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13725..15905
DNA (2181bp) protein (727aa)
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Beggiatoa alba B18LD RepID=I3CC71_9GAMM rbh
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:BAP54347.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_1369_13
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15989..16588)
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Beggiatoa alba B18LD RepID=I3CDE9_9GAMM
lipoprotein
Lipoprotein {ECO:0000313|EMBL:BAP56464.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_1369_14
unknown

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17240..17431
DNA (192bp) protein (64aa)

This feature has no annotations

ar4r2_scaffold_1369_15
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17484..20339
DNA (2856bp) protein (952aa)
formate dehydrogenase-O, major subunit (EC:1.2.1.2) rbh
Anaerobic dehydrogenase, typically selenocysteine-containing n=1 Tax=Beggiatoa alba B18LD RepID=I3CCR3_9GAMM rbh
Anaerobic dehydrogenase, typically selenocysteine-containing {ECO:0000313|EMBL:EIJ41406.1}; Flags: Precursor;; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
ar4r2_scaffold_1369_16
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20800..21375
DNA (576bp) protein (192aa)
Site-specific integrase-resolvase n=1 Tax=Anabaena sp. 90 RepID=K7W4Z8_9NOST
DNA invertase {ECO:0000313|EMBL:KHD05830.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
site-specific integrase-resolvase
Displaying 16 items

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