ggKbase home page

ar4r2_scaffold_1077

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_1077_1
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..345
DNA (345bp) protein (115aa)
Helix-turn-helix domain protein n=1 Tax=Lyngbya aestuarii BL J RepID=U7QQ63_9CYAN
transposase IS605
Transposase IS605 {ECO:0000313|EMBL:BAP54457.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_1077_2
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

415..618
DNA (204bp) protein (68aa)
transposase IS605
Transposase IS605 {ECO:0000313|EMBL:BAP54457.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_1077_3
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

758..2416
DNA (1659bp) protein (553aa)
Probable protein kinase UbiB {ECO:0000256|HAMAP-Rule:MF_00414, ECO:0000256|SAAS:SAAS00063507}; EC=2.7.-.- {ECO:0000256|HAMAP-Rule:MF_00414, ECO:0000256|SAAS:SAAS00063486};; Ubiquinone biosynthesis protein UbiB {ECO:0000256|HAMAP-Rule:MF_00414}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
Probable protein kinase UbiB n=1 Tax=Beggiatoa alba B18LD RepID=I3CDP7_9GAMM rbh
2-polyprenylphenol 6-hydroxylase
ar4r2_scaffold_1077_4
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3046..5085
DNA (2040bp) protein (680aa)
Cadmium-transporting ATPase n=1 Tax=Beggiatoa sp. PS RepID=A7BQK6_9GAMM rbh
Cadmium-transporting ATPase {ECO:0000313|EMBL:EDN71178.1}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
cadmium-transporting ATPase
ar4r2_scaffold_1077_5
Achromobacter sp. RTa, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5097..6023
DNA (927bp) protein (309aa)
Gluconolactonase n=1 Tax=Achromobacter xylosoxidans AXX-A RepID=F7T1I4_ALCXX rbh
Gluconolactonase {ECO:0000313|EMBL:KGD99026.1}; TaxID=1532557 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter sp. RTa.;"
SMP-30/gluconolaconase/LRE domain-containing protein rbh
ar4r2_scaffold_1077_6
unknown

Not on your lists

6088..7017
DNA (930bp) protein (310aa)

This feature has no annotations

ar4r2_scaffold_1077_7
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7131..8267)
DNA (1137bp) protein (379aa)
Cytochrome Ni/Fe component of hydrogenase-2 n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TYL7_9PROT rbh
hydrogenase
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
ar4r2_scaffold_1077_8
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8270..9265)
DNA (996bp) protein (332aa)
Hydrogenase-2 operon protein hybA n=1 Tax=Azospirillum brasilense Sp245 RepID=G8ANV1_AZOBR rbh
Hydrogenase 2 4Fe-4S ferredoxin-type component {ECO:0000313|EMBL:CDH43979.1}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
hybA; hydrogenase-2 operon protein hybA rbh
ar4r2_scaffold_1077_9
Sedimenticola sp. SIP-G1, Sedimenticola, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9277..10440)
DNA (1164bp) protein (388aa)
Hydrogenase 2 small subunit {ECO:0000313|EMBL:AKH19111.1}; EC=1.12.99.6 {ECO:0000313|EMBL:AKH19111.1};; TaxID=1543721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Sedimenticola.;" source="Sedimenticola sp. SIP-G1.;"
hupS; Uptake hydrogenase small subunit precursor (Hydrogenlyase) (Membrane-bound hydrogenase small subunit) (EC:1.12.99.6)
Ni,Fe-hydrogenase I small subunit n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TYL9_9PROT rbh
ar4r2_scaffold_1077_10
unknown

Not on your lists

comp(10654..10788)
DNA (135bp) protein (45aa)

This feature has no annotations

ar4r2_scaffold_1077_11
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11080..13092
DNA (2013bp) protein (671aa)
Signal transduction histidine kinase n=1 Tax=Beggiatoa sp. PS RepID=A7BUR1_9GAMM rbh
Signal transduction histidine kinase {ECO:0000313|EMBL:EDN69725.1}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
signal transduction histidine kinase
ar4r2_scaffold_1077_12
Sedimenticola sp. SIP-G1, Sedimenticola, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13183..13911
DNA (729bp) protein (243aa)
DNA polymerase III subunit epsilon (EC:2.7.7.7)
Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Beggiatoa alba B18LD RepID=I3CKF7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AKH21874.1}; TaxID=1543721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Sedimenticola.;" source="Sedimenticola sp. SIP-G1.;"
ar4r2_scaffold_1077_13
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14405..15406)
DNA (1002bp) protein (334aa)
Tripartite ATP-independent periplasmic transporter solute receptor, DctP family n=1 Tax=Beggiatoa alba B18LD RepID=I3CJP3_9GAMM rbh
Tripartite ATP-independent periplasmic transporter solute receptor, DctP family {ECO:0000313|EMBL:EIJ43836.1}; Flags: Precursor;; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
C4 dicarboxylate binding protein rbh
ar4r2_scaffold_1077_14
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15855..16907
DNA (1053bp) protein (351aa)
ABC-type uncharacterized transport system, permease component n=1 Tax=Beggiatoa alba B18LD RepID=I3CK24_9GAMM rbh
ABC transporter permease
ABC transporter permease {ECO:0000313|EMBL:BAP55689.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_1077_15
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16904..17941
DNA (1038bp) protein (346aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NMX9_9DELT rbh
peptide ABC transporter permease
Peptide ABC transporter permease {ECO:0000313|EMBL:BAP55690.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_1077_16
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18238..19956
DNA (1719bp) protein (573aa)
Acetolactate synthase, large subunit, biosynthetic type n=1 Tax=Beggiatoa alba B18LD RepID=U5FCF6_9GAMM rbh
acetolactate synthase, large subunit, biosynthetic type
Acetolactate synthase, large subunit, biosynthetic type {ECO:0000313|EMBL:BAP56629.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_1077_17
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19958..20452
DNA (495bp) protein (165aa)
Acetolactate synthase, small subunit n=1 Tax=Beggiatoa alba B18LD RepID=I3CIF0_9GAMM
acetolactate synthase, small subunit
Acetolactate synthase, small subunit {ECO:0000313|EMBL:BAP56628.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_1077_trna_1
unknown

Not on your lists

comp(20621..20694)
DNA (74bp)
transferRNA Met
ar4r2_scaffold_1077_18
unknown

Not on your lists

21019..21384
DNA (366bp) protein (122aa)

This feature has no annotations

ar4r2_scaffold_1077_19
Oceanimonas sp. GK1, Oceanimonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21515..22279)
DNA (765bp) protein (255aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=511062 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Oceanimonas.;" source="Oceanimonas sp. (strain GK1).;"
Methionine aminopeptidase n=1 Tax=Oceanimonas sp. (strain GK1) RepID=H2FXM0_OCESG rbh
methionine aminopeptidase rbh
ar4r2_scaffold_1077_20
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22559..23410)
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Microcystis aeruginosa PCC 9808 RepID=I4HFN0_MICAE
Uncharacterized protein {ECO:0000313|EMBL:ETK34328.1}; TaxID=316330 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
hypothetical protein
ar4r2_scaffold_1077_21
unknown

Not on your lists

comp(23458..23625)
DNA (168bp) protein (56aa)

This feature has no annotations

ar4r2_scaffold_1077_22
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23663..24742)
DNA (1080bp) protein (360aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
Histidinol-phosphate aminotransferase n=1 Tax=Beggiatoa alba B18LD RepID=I3CET5_9GAMM rbh
histidinol-phosphate aminotransferase
ar4r2_scaffold_1077_23
Bordetella holmesii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24797..25294)
DNA (498bp) protein (166aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=1331212 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella holmesii CDC-H809-BH.;"
Peptidyl-prolyl cis-trans isomerase n=3 Tax=Bordetella holmesii RepID=M5NJW0_9BORD
cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD family protein
ar4r2_scaffold_1077_24

Not on your lists

comp(25398..25709)
DNA (312bp) protein (104aa)
Protein involved in sulfur oxidation DsrR n=1 Tax=uncultured bacterium ws034A6 RepID=I1X562_9BACT
Protein involved in sulfur oxidation DsrR {ECO:0000313|EMBL:AFI78637.1}; TaxID=1131824 species="Bacteria; environmental samples.;" source="uncultured bacterium ws034A6.;"
protein involved in sulfur oxidation DsrR
ar4r2_scaffold_1077_25
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25812..28511)
DNA (2700bp) protein (900aa)
Methyl-accepting chemotaxis protein n=1 Tax=Beggiatoa alba B18LD RepID=I3CL18_9GAMM
methyl-accepting chemotaxis protein
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:BAP57466.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_1077_26
Oscillatoria nigro-viridis, Oscillatoria, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(28530..34196)
DNA (5667bp) protein (1889aa)
Adenylate/guanylate cyclase with GAF and PAS/PAC sensors n=1 Tax=Oscillatoria nigro-viridis PCC 7112 RepID=K9VPC2_9CYAN rbh
Adenylate/guanylate cyclase with GAF and PAS/PAC sensors {ECO:0000313|EMBL:AFZ09943.1}; TaxID=179408 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Oscillatoria.;" source="Oscillatoria nigro-viridis PCC 7112.;"
adenylate/guanylate cyclase with GAF and PAS/PAC sensors rbh
ar4r2_scaffold_1077_27
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34721..35101
DNA (381bp) protein (127aa)
Protein containing DUF498 n=1 Tax=Beggiatoa sp. PS RepID=A7C610_9GAMM
Protein containing DUF498 {ECO:0000313|EMBL:EDN65774.1}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
hypothetical protein
ar4r2_scaffold_1077_28
Methylobacter tundripaludum, Methylobacter, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35385..35942
DNA (558bp) protein (186aa)
hypothetical protein n=1 Tax=Methylobacter marinus RepID=UPI000373E125
Transposase {ECO:0000313|EMBL:EGW19955.1}; Flags: Fragment;; TaxID=697282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylobacter.;" source="Methylobacter tundripaludum SV96.;"
transposase
Displaying 29 items

View Taxonomy