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ar4r2_scaffold_4647

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_4647_1
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..240
DNA (240bp) protein (80aa)
Transposase IS4 family protein n=2 Tax=Thiothrix nivea DSM 5205 RepID=I3BY03_9GAMM
Transposase IS4 family protein {ECO:0000313|EMBL:EIJ36246.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
transposase, IS4 family protein
ar4r2_scaffold_4647_2
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(318..1064)
DNA (747bp) protein (249aa)
Molybdopterin biosynthesis MoeB protein n=1 Tax=Beggiatoa sp. PS RepID=A7C191_9GAMM rbh
molybdopterin biosynthesis protein MoeB
Molybdopterin biosynthesis protein MoeB {ECO:0000313|EMBL:BAP56052.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_4647_3
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1080..3488)
DNA (2409bp) protein (803aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
DNA gyrase subunit B n=1 Tax=Beggiatoa alba B18LD RepID=I3CHU1_9GAMM rbh
DNA gyrase subunit B
ar4r2_scaffold_4647_4
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3668..4192)
DNA (525bp) protein (175aa)
Heptaprenyl diphosphate synthase component I n=1 Tax=Beggiatoa sp. PS RepID=A7C566_9GAMM
Heptaprenyl diphosphate synthase {ECO:0000313|EMBL:KHD10605.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
heptaprenyl diphosphate synthase
ar4r2_scaffold_4647_5
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4208..4933)
DNA (726bp) protein (242aa)
Secreted protein n=1 Tax=Beggiatoa sp. PS RepID=A7C3E1_9GAMM
Secreted protein {ECO:0000313|EMBL:EDN66693.1}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
ar4r2_scaffold_4647_6
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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5591..7456
DNA (1866bp) protein (622aa)
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007814}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007809};; Hydroxymethylpyrimidine phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00089}; Thiamine biosynthesis protein ThiC {ECO:0000256|HAMAP-Rule:MF_00089}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
Phosphomethylpyrimidine synthase n=1 Tax=Beggiatoa sp. PS RepID=A7BRZ3_9GAMM rbh
thiamine biosynthesis protein ThiC
ar4r2_scaffold_4647_7
unknown

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8072..8296
DNA (225bp) protein (75aa)

This feature has no annotations

ar4r2_scaffold_4647_8
Beggiatoa sp. PS, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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8310..10625
DNA (2316bp) protein (772aa)
Putative uncharacterized protein n=1 Tax=Beggiatoa sp. PS RepID=A7BZT7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EDN67948.1}; TaxID=422289 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa sp. PS.;"
serine/threonine kinase
ar4r2_scaffold_4647_9
unknown

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10770..10976
DNA (207bp) protein (69aa)

This feature has no annotations

ar4r2_scaffold_4647_10
R_Gammaproteobacteria_37_14, Gammaproteobacteria, Proteobacteria, Bacteria

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10963..11337
DNA (375bp) protein (125aa)
Ribonuclease VapC n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XP61_9BACT
putative nucleic acid-binding protein, contains PIN domain
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_37_14_curated
ar4r2_scaffold_4647_11
Moorea producens, Moorea, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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11378..11716
DNA (339bp) protein (113aa)
Putative uncharacterized protein n=1 Tax=Moorea producens 3L RepID=F4XQG3_9CYAN
Putative uncharacterized protein {ECO:0000313|EMBL:EGJ33170.1}; TaxID=489825 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Moorea.;" source="Moorea producens 3L.;"
hypothetical protein
ar4r2_scaffold_4647_12
Nodularia spumigena, Nodularia, Nostocales, Cyanobacteria, Bacteria

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11720..12775
DNA (1056bp) protein (352aa)
RNA-directed DNA polymerase n=1 Tax=Fischerella muscicola RepID=UPI0002D60534 rbh
Retron-type reverse transcriptase {ECO:0000313|EMBL:AHJ30116.1}; TaxID=313624 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nodularia.;" source="Nodularia spumigena CCY9414.;"
RNA-directed DNA polymerase rbh
ar4r2_scaffold_4647_13
unknown

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13138..13365
DNA (228bp) protein (76aa)
hypothetical protein
ar4r2_scaffold_4647_14
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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13617..14495
DNA (879bp) protein (293aa)
hypothetical protein n=1 Tax=zeta proteobacterium SCGC AB-137-C09 RepID=UPI00035F1599 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAP55374.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_4647_15
unknown

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14809..15099
DNA (291bp) protein (97aa)
hypothetical protein
ar4r2_scaffold_4647_16
Aphanizomenon flos-aquae, Aphanizomenon, Nostocales, Cyanobacteria, Bacteria

Not on your lists

15197..15418
DNA (222bp) protein (74aa)
PIN domain-containing protein n=1 Tax=Anabaena sp. 90 RepID=K7W404_9NOST
PIN domain-containing protein
Nucleic acid-binding protein {ECO:0000313|EMBL:KHG40444.1}; TaxID=1532906 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Aphanizomenon.;" source="Aphanizomenon flos-aquae 2012/KM1/D3.;"
ar4r2_scaffold_4647_17
unknown

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15944..16516
DNA (573bp) protein (191aa)

This feature has no annotations

ar4r2_scaffold_4647_18
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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16561..17496
DNA (936bp) protein (312aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Beggiatoa alba B18LD RepID=I3CII7_9GAMM
FKBP-type peptidylprolyl cis-trans isomerase
ar4r2_scaffold_4647_19
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(17771..19003)
DNA (1233bp) protein (411aa)
Multifunctional CCA protein n=1 Tax=Beggiatoa alba B18LD RepID=I3CIN9_9GAMM rbh
tRNA nucleotidyl transferase
Multifunctional CCA protein {ECO:0000256|HAMAP-Rule:MF_01261}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
ar4r2_scaffold_4647_20
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(19116..19718)
DNA (603bp) protein (201aa)
NAD(P)H dehydrogenase (quinone) {ECO:0000256|SAAS:SAAS00064138}; EC=1.6.5.2 {ECO:0000256|SAAS:SAAS00064138};; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
NAD(P)H:quinone oxidoreductase, type IV n=1 Tax=Beggiatoa alba B18LD RepID=I3CDE8_9GAMM
NAD(P)H:quinone oxidoreductase, type IV
ar4r2_scaffold_4647_21
Xenorhabdus bovienii, Xenorhabdus, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(19711..20157)
DNA (447bp) protein (149aa)
Uncharacterized protein n=2 Tax=Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6) RepID=D3VJN1_XENNA
Transposase
Transposase {ECO:0000313|EMBL:CDH18354.1}; TaxID=1398203 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Xenorhabdus.;" source="Xenorhabdus bovienii str. kraussei Quebec.;"
Displaying 21 items

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