ggKbase home page

ar4r2_scaffold_436

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_436_1
Thioalkalivibrio nitratireducens, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..296)
DNA (294bp) protein (98aa)
Sulfide dehydrogenase [flavocytochrome C] flavoprotein chain n=1 Tax=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) RepID=L0E433_THIND
Sulfide dehydrogenase [flavocytochrome C] flavoprotein chain precursor
Sulfide dehydrogenase [flavocytochrome C] flavoprotein chain {ECO:0000313|EMBL:AGA35416.1}; TaxID=1255043 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 /; ALEN2).;"
ar4r2_scaffold_436_2
Thioalkalivibrio nitratireducens, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(308..640)
DNA (333bp) protein (111aa)
Cytochrome c subunit of flavocytochrome c sulfide dehydrogenase n=1 Tax=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) RepID=L0E2J3_THIND
cytochrome c subunit of flavocytochrome c sulfide dehydrogenase
Cytochrome c subunit of flavocytochrome c sulfide dehydrogenase {ECO:0000313|EMBL:AGA35415.1}; TaxID=1255043 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 /; ALEN2).;"
ar4r2_scaffold_436_3
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(712..1950)
DNA (1239bp) protein (413aa)
Uncharacterized protein n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GME4_THISH rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACL71776.1}; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
ar4r2_scaffold_436_4
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1954..3354)
DNA (1401bp) protein (467aa)
Cytochrome c class I n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GME3_THISH rbh
cytochrome c class I rbh
Cytochrome c class I {ECO:0000313|EMBL:ACL71775.1}; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
ar4r2_scaffold_436_5
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3569..4624)
DNA (1056bp) protein (352aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KXT1_HALNC rbh
binding-protein-dependent transport system inner membrane protein rbh
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACX95254.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
ar4r2_scaffold_436_6
Achromobacter arsenitoxydans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4696..5286
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0003131CD9
Uncharacterized protein {ECO:0000313|EMBL:EHK64847.1}; TaxID=477184 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter arsenitoxydans SY8.;"
hypothetical protein
ar4r2_scaffold_436_7
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5361..6416)
DNA (1056bp) protein (352aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KXT0_HALNC rbh
ABC transporter permease
Tax=BJP_IG2102_Gammaproteobacteria_62_140
ar4r2_scaffold_436_8
Xenorhabdus bovienii, Xenorhabdus, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6413..6778)
DNA (366bp) protein (122aa)
Putative ferredoxin n=1 Tax=Xenorhabdus bovienii (strain SS-2004) RepID=D3V3K8_XENBS
conserved protein of unknown function
Putative ferredoxin {ECO:0000313|EMBL:CDG92549.1}; TaxID=1397852 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Xenorhabdus.;" source="Xenorhabdus bovienii str. feltiae Florida.;"
ar4r2_scaffold_436_9
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6775..8523)
DNA (1749bp) protein (583aa)
Extracellular solute-binding protein family 5 n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KXS7_HALNC rbh
family 5 extracellular solute-binding protein rbh
Tax=BJP_IG2102_Gammaproteobacteria_62_140
ar4r2_scaffold_436_10
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8615..9403
DNA (789bp) protein (263aa)
Enoyl-[acyl-carrier-protein] reductase [NADH] {ECO:0000256|PIRNR:PIRNR000094}; EC=1.3.1.9 {ECO:0000256|PIRNR:PIRNR000094};; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
Enoyl-[acyl-carrier-protein] reductase [NADH] n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KXS6_HALNC rbh
short-chain dehydrogenase/reductase SDR rbh
ar4r2_scaffold_436_11
unknown

Not on your lists

9553..9825
DNA (273bp) protein (91aa)
hypothetical protein n=1 Tax=Thiothrix disciformis RepID=UPI00036B3BA2
hypothetical protein
ar4r2_scaffold_436_12
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10558..11256)
DNA (699bp) protein (233aa)
Lipoprotein-releasing system ATP-binding protein LolD n=1 Tax=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) RepID=LOLD_METCA
lipoprotein ABC transporter ATP-binding protein LolD
Tax=BJP_IG2102_Gammaproteobacteria_62_140
ar4r2_scaffold_436_13
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11249..12496)
DNA (1248bp) protein (416aa)
Lipoprotein releasing system, transmembrane protein, LolC/E family n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KX73_HALNC rbh
lipoprotein releasing system transmembrane protein LolC/E family rbh
Lipoprotein releasing system, transmembrane protein, LolC/E family {ECO:0000313|EMBL:ACX95087.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
ar4r2_scaffold_436_14
Polynucleobacter necessarius, Polynucleobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12653..12871
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Polynucleobacter necessarius subsp. asymbioticus (strain DSM 18221 / CIP 109841 / QLW-P1DMWA-1) RepID=A4SWZ8_POLSQ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABP34012.1}; TaxID=312153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Polynucleobacter.;" source="Polynucleobacter necessarius subsp. asymbioticus (strain DSM 18221 /; CIP 109841 / QLW-P1DMWA-1).;"
ar4r2_scaffold_436_15
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12994..16440
DNA (3447bp) protein (1149aa)
Transcription-repair-coupling factor n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GR23_THISH rbh
transcription-repair coupling factor rbh
Tax=BJP_IG2102_Gammaproteobacteria_62_140
ar4r2_scaffold_436_16
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16580..17095
DNA (516bp) protein (172aa)
adenine phosphoribosyltransferase (EC:2.4.2.7)
Adenine phosphoribosyltransferase {ECO:0000255|HAMAP-Rule:MF_00004}; Short=APRT {ECO:0000255|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000255|HAMAP-Rule:MF_00004};; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI0003710D3B
ar4r2_scaffold_436_17
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17322..17903)
DNA (582bp) protein (194aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000380CFDD
Uncharacterized protein {ECO:0000313|EMBL:GAD24527.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
ar4r2_scaffold_436_18
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17900..18745)
DNA (846bp) protein (282aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI0003678F13
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:CDI03332.1}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
alpha/beta hydrolase
ar4r2_scaffold_436_19
Nocardia vulneris, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18742..19722)
DNA (981bp) protein (327aa)
Zinc-containing alcohol dehydrogenase / quinone oxidoreductase n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9QUF4_9DELT rbh
NADPH:quinone reductase {ECO:0000313|EMBL:KIA63344.1}; TaxID=1141657 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia vulneris.;"
Zn-binding oxidoreductase rbh
ar4r2_scaffold_436_20
Nocardia brasiliensis, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19929..20603
DNA (675bp) protein (225aa)
AcrR family transcriptional regulator n=1 Tax=Nocardia brasiliensis ATCC 700358 RepID=K0F705_9NOCA
AcrR family transcriptional regulator
AcrR family transcriptional regulator {ECO:0000313|EMBL:AFU05522.1}; TaxID=1133849 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia brasiliensis ATCC 700358.;"
ar4r2_scaffold_436_21
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20613..21062
DNA (450bp) protein (150aa)
RDD domain containing protein n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BYT5_NITHN
RDD domain-containing protein
RDD domain containing protein {ECO:0000313|EMBL:ADE16073.1}; Flags: Precursor;; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
ar4r2_scaffold_436_22
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21059..21508
DNA (450bp) protein (150aa)
Putative uncharacterized protein n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KVP4_HALNC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACX96874.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
ar4r2_scaffold_436_23
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(21542..22243)
DNA (702bp) protein (234aa)
hypothetical protein n=1 Tax=Endozoicomonas elysicola RepID=UPI0003672BCD
metal-dependent protease molecular chaperone
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
ar4r2_scaffold_436_24
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22249..22659)
DNA (411bp) protein (137aa)
Ferric uptake regulator, Fur family n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KZF0_HALNC
Fur family ferric uptake regulator
Ferric uptake regulator, Fur family {ECO:0000313|EMBL:ACX95823.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
ar4r2_scaffold_436_25
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22806..23177
DNA (372bp) protein (124aa)
Outer membrane protein assembly factor BamE n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47HJ0_DECAR
SmpA/OmlA
Outer membrane protein assembly factor BamE {ECO:0000256|HAMAP-Rule:MF_00925}; Flags: Precursor;; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
ar4r2_scaffold_436_26
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23321..23665)
DNA (345bp) protein (115aa)
UPF0125 protein ebA6652 n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5NYE2_AROAE
hypothetical protein
UPF0125 protein ebA6652 {ECO:0000256|HAMAP-Rule:MF_00460}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
ar4r2_scaffold_436_27
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23649..24089)
DNA (441bp) protein (147aa)
Cyclase/dehydrase n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BY78_NITHN
cyclase/dehydrase
Tax=BJP_IG2102_Gammaproteobacteria_62_140
ar4r2_scaffold_436_28
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24086..25447)
DNA (1362bp) protein (454aa)
Transporter n=2 Tax=sulfur-oxidizing symbionts RepID=G2DHK3_9GAMM rbh
sodium:neurotransmitter symporter rbh
Tax=BJP_IG2102_Gammaproteobacteria_62_140
ar4r2_scaffold_436_29
Thioalkalivibrio thiocyanoxidans, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25579..26064
DNA (486bp) protein (162aa)
SsrA-binding protein n=1 Tax=Thioalkalivibrio thiocyanoxidans ARh 4 RepID=G4DL13_9GAMM
SsrA-binding protein
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=713587 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio thiocyanoxidans ARh 4.;"
ar4r2_scaffold_436_30
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26118..26843)
DNA (726bp) protein (242aa)
DNA polymerase III subunit epsilon (EC:2.7.7.7)
DNA polymerase III subunit epsilon n=1 Tax=Methylohalobius crimeensis RepID=UPI0003B42834
DNA polymerase III subunit epsilon {ECO:0000313|EMBL:EZQ17119.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
Displaying items 1-30 of 41 in total

View Taxonomy