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ar4r2_scaffold_1034

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_1034_1
GWF2_Sideroxydans_59_14_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..253
DNA (252bp) protein (84aa)
Beta-lactamase domain protein n=1 Tax=Halorhodospira halophila (strain DSM 244 / SL1) RepID=A1WYE2_HALHL
beta-lactamase domain-containing protein
Tax=GWF2_Sideroxydans_59_14_curated
ar4r2_scaffold_1034_2
Thauera terpenica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

257..1204
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Thauera terpenica 58Eu RepID=S9ZEK3_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:EPZ15715.1}; TaxID=1348657 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera terpenica 58Eu.;"
cation diffusion facilitator family transporter
ar4r2_scaffold_1034_3
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1201..1497
DNA (297bp) protein (99aa)
hypothetical protein id=12498538 bin=THIO_MID species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
ar4r2_scaffold_1034_4
uncultured Thiohalocapsa sp. PB-PSB1, Thiohalocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1514..2602
DNA (1089bp) protein (363aa)
Arsenic transporter n=1 Tax=uncultured Thiohalocapsa sp. PB-PSB1 RepID=V4J6U0_9GAMM rbh
Arsenic transporter {ECO:0000313|EMBL:ESQ11346.1}; TaxID=1385625 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiohalocapsa; environmental samples.;" source="uncultured Thiohalocapsa sp. PB-PSB1.;"
arsenite efflux pump ACR3 and related permease rbh
ar4r2_scaffold_1034_5
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2789..3403
DNA (615bp) protein (205aa)
Transcriptional regulator, TetR family n=5 Tax=Proteobacteria RepID=A1U021_MARAV rbh
TetR family transcriptional regulator rbh
TetR family transcriptional regulator {ECO:0000313|EMBL:AHY10314.1}; TaxID=1333848 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii CFNIH1.;"
ar4r2_scaffold_1034_6
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3407..4558
DNA (1152bp) protein (384aa)
Efflux transporter, RND family, MFP subunit n=2 Tax=Enterobacteriaceae RepID=S0Y8B0_ECOLX rbh
Hemolysin secretion protein D {ECO:0000313|EMBL:AKE62274.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
RND family efflux transporter MFP subunit
ar4r2_scaffold_1034_7
Pelobacter propionicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4555..5760
DNA (1206bp) protein (402aa)
Uncharacterized protein n=2 Tax=Proteobacteria RepID=A0R854_PELPD rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABL01421.1}; TaxID=338966 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter propionicus (strain DSM 2379).;"
ar4r2_scaffold_1034_8
Pelobacter propionicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5762..6469
DNA (708bp) protein (236aa)
ABC transporter related n=2 Tax=Proteobacteria RepID=A0R853_PELPD rbh
ABC transporter related rbh
ABC transporter related {ECO:0000313|EMBL:ABL01420.1}; ABC transporter related protein {ECO:0000313|EMBL:ABK99526.1}; TaxID=338966 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter propionicus (strain DSM 2379).;"
ar4r2_scaffold_1034_9
Allochromatium vinosum, Allochromatium, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6569..7471)
DNA (903bp) protein (301aa)
Transcriptional regulator, ArsR family n=1 Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=D3RTF4_ALLVD rbh
ArsR family transcriptional regulator rbh
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:ADC62463.1}; TaxID=572477 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Allochromatium.;" source="Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 /; NCIMB 10441 / D) (Chromatium vinosum).;"
ar4r2_scaffold_1034_10
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7526..8113)
DNA (588bp) protein (196aa)
ADP-ribose diphosphatase (EC:3.6.1.13)
ADP-ribose diphosphatase {ECO:0000313|EMBL:ACX95899.1}; EC=3.6.1.13 {ECO:0000313|EMBL:ACX95899.1};; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALE20 RepID=UPI00035FC278
ar4r2_scaffold_1034_11
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8152..8454
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GR41_THISH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL72461.1}; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
ar4r2_scaffold_1034_12
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8437..9216)
DNA (780bp) protein (260aa)
3-deoxy-manno-octulosonate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008}; EC=2.7.7.38 {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008};; CMP-2-keto-3-deoxyoctulosonic acid synthase {ECO:0000256|HAMAP-Rule:MF_00057}; TaxID=160660 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Thiobacillus prosperus.;"
3-deoxy-manno-octulosonate cytidylyltransferase (EC:2.7.7.38)
3-deoxy-manno-octulosonate cytidylyltransferase n=1 Tax=Methylomonas methanica (strain MC09) RepID=F9ZYE7_METMM
ar4r2_scaffold_1034_13
Thiorhodovibrio sp. 970, Thiorhodovibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9217..9426)
DNA (210bp) protein (70aa)
UPF0434 protein Thi970DRAFT_00671 n=1 Tax=Thiorhodovibrio sp. 970 RepID=H8YX46_9GAMM
UPF0434 protein Thi970DRAFT_00671 {ECO:0000256|HAMAP-Rule:MF_01187}; TaxID=631362 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodovibrio.;" source="Thiorhodovibrio sp. 970.;"
hypothetical protein
ar4r2_scaffold_1034_14
Thiocystis violascens, Thiocystis, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9407..10387)
DNA (981bp) protein (327aa)
lipid-A-disaccharide kinase (EC:2.7.1.130)
Tetraacyldisaccharide 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093884}; EC=2.7.1.130 {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093878};; Lipid A 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409}; Flags: Precursor;; TaxID=765911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocystis.;" source="Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) (Chromatium; violascens).;"
hypothetical protein n=1 Tax=Lamprocystis purpurea RepID=UPI00038209D6
ar4r2_scaffold_1034_15
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10445..12229)
DNA (1785bp) protein (595aa)
Lipid A export ATP-binding/permease protein MsbA {ECO:0000256|HAMAP-Rule:MF_01703}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01703};; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
Lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L1H8_HALNC rbh
lipid A ABC transporter ATPase/inner membrane protein MsbA rbh
ar4r2_scaffold_1034_16
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12226..12630)
DNA (405bp) protein (135aa)
biopolymer transporter ExbD n=1 Tax=Pseudomonas aeruginosa RepID=UPI0002EE403E
exbD; hypothetical protein
Biopolymer transport protein ExbD/TolR {ECO:0000313|EMBL:BAR66987.1}; Biopolymer transporter ExbD {ECO:0000313|EMBL:AKE68906.1}; Pseudomonas aeruginosa genome assembly PAE221 {ECO:0000313|EMBL:CEI77750.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ38926.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
ar4r2_scaffold_1034_17
Halorhodospira halochloris, Halorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12627..13268)
DNA (642bp) protein (214aa)
MotA/TolQ/ExbB proton channel n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GR34_THISH
biopolymer transporter ExbB
Biopolymer transporter ExbB {ECO:0000313|EMBL:AHK78885.1}; TaxID=1354791 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Halorhodospira.;" source="Halorhodospira halochloris str. A.;"
ar4r2_scaffold_1034_18
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13536..14630)
DNA (1095bp) protein (365aa)
phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54) rbh
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; EC=2.5.1.54 {ECO:0000256|PIRNR:PIRNR001361};; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000256|PIRNR:PIRNR001361}; DAHP synthase {ECO:0000256|PIRNR:PIRNR001361}; Phospho-2-keto-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
Phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L1I3_HALNC rbh
ar4r2_scaffold_1034_19
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14816..16270)
DNA (1455bp) protein (485aa)
Sodium/proton antiporter, NhaD family n=2 Tax=Nitrosococcus oceani RepID=Q3JB18_NITOC rbh
NhaD family Na(+)/H(+) antiporter rbh
Tax=BJP_IG2102_Gammaproteobacteria_62_140
ar4r2_scaffold_1034_20
endosymbiont of Tevnia jerichonana, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16609..18006
DNA (1398bp) protein (466aa)
Na(+)/H(+) antiporter NhaA n=1 Tax=endosymbiont of Tevnia jerichonana (vent Tica) RepID=G2FJY7_9GAMM rbh
Na(+)/H(+) antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; Sodium/proton antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; TaxID=1049564 species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="endosymbiont of Tevnia jerichonana (vent Tica).;"
Na+/H+ antiporter NhaA rbh
ar4r2_scaffold_1034_21
Thioalkalivibrio nitratireducens, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18034..18837)
DNA (804bp) protein (268aa)
Putative uncharacterized protein n=1 Tax=Thioalkalivibrio thiocyanoxidans ARh 4 RepID=G4DJX7_9GAMM
protein of unknown function DUF1566
Uncharacterized protein {ECO:0000313|EMBL:AGA32873.1}; TaxID=1255043 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 /; ALEN2).;"
ar4r2_scaffold_1034_22
R_Gallionellales_59_110, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(18911..20338)
DNA (1428bp) protein (476aa)
sodium:solute symporter
Probable sodium/solute symporter id=1320532 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_59_110_curated
ar4r2_scaffold_1034_trna_1
unknown

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comp(20524..20610)
DNA (87bp)
transferRNA Ser
ar4r2_scaffold_1034_23
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20768..21538
DNA (771bp) protein (257aa)
methionine aminopeptidase (EC:3.4.11.18) rbh
Methionine aminopeptidase n=1 Tax=uncultured gamma proteobacterium RepID=H5SMF9_9GAMM rbh
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
ar4r2_scaffold_1034_24
Alkalilimnicola ehrlichii, Alkalilimnicola, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21709..24372
DNA (2664bp) protein (888aa)
UTP-GlnB uridylyltransferase, GlnD (EC:2.7.7.59) rbh
Bifunctional uridylyltransferase/uridylyl-removing enzyme n=1 Tax=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) RepID=Q0A7H8_ALKEH rbh
Bifunctional uridylyltransferase/uridylyl-removing enzyme {ECO:0000256|HAMAP-Rule:MF_00277, ECO:0000256|SAAS:SAAS00228994}; Short=UTase/UR {ECO:0000256|HAMAP-Rule:MF_00277};; Bifunctional [protein-PII] modification enzyme {ECO:0000256|HAMAP-Rule:MF_00277}; Bifunctional nitrogen sensor protein {ECO:0000256|HAMAP-Rule:MF_00277}; TaxID=187272 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Alkalilimnicola.;" source="Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1).;"
ar4r2_scaffold_1034_25
Pseudoalteromonas flavipulchra, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24372..25013
DNA (642bp) protein (214aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1315273 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.;" source="Pseudoalteromonas flavipulchra NCIMB 2033 = ATCC BAA-314.;"
tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase n=1 Tax=Pseudoalteromonas sp. BSi20429 RepID=G7F6I8_9GAMM
pseudouridine synthase
ar4r2_scaffold_1034_26
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25190..25972
DNA (783bp) protein (261aa)
Type II and III secretion system protein n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SGQ0_GALCS
type II and III secretion system protein
Tax=RBG_16_Betaproteobacteria_66_20_curated
ar4r2_scaffold_1034_27
Shewanella sp. ANA-3, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26275..27789)
DNA (1515bp) protein (505aa)
Uncharacterized protein n=1 Tax=Shewanella sp. (strain ANA-3) RepID=A0KSU6_SHESA rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABK46865.1}; TaxID=94122 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella sp. (strain ANA-3).;"
ar4r2_scaffold_1034_28
unknown

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comp(27786..27956)
DNA (171bp) protein (57aa)

This feature has no annotations

Displaying 29 items

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