ggKbase home page

ar4r2_scaffold_956

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_956_1
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

231..971
DNA (741bp) protein (247aa)
NifY protein n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K2V5_AZOSB
nifY1; NifY protein
NifY protein {ECO:0000313|EMBL:CAL93160.1}; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain BH72).;"
ar4r2_scaffold_956_2
Pseudomonas sp. BAY1663, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

968..1261
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Azoarcus sp. (strain BH72) RepID=Q9F0V4_AZOSB
Uncharacterized protein {ECO:0000313|EMBL:EXF44761.1}; TaxID=1439940 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. BAY1663.;"
hypothetical protein
ar4r2_scaffold_956_3
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1258..2232
DNA (975bp) protein (325aa)
Uncharacterized protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RRH0_ACCPU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV37681.1}; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
ar4r2_scaffold_956_4
Thiorhodovibrio sp. 970, Thiorhodovibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2274..2774)
DNA (501bp) protein (167aa)
Putative acetyltransferase n=1 Tax=Thiorhodovibrio sp. 970 RepID=H8YYE7_9GAMM
Putative acetyltransferase {ECO:0000313|EMBL:EIC23473.1}; TaxID=631362 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodovibrio.;" source="Thiorhodovibrio sp. 970.;"
acetyltransferase
ar4r2_scaffold_956_5
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2771..3052)
DNA (282bp) protein (94aa)
hypothetical protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002625489
Uncharacterized protein {ECO:0000313|EMBL:ENO84816.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
hypothetical protein
ar4r2_scaffold_956_6
Marinobacterium sp. AK27, Marinobacterium, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3433..4950
DNA (1518bp) protein (506aa)
Nitrogenase MoFe cofactor biosynthesis protein NifE n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47FY1_DECAR rbh
Nitrogenase FeMo-cofactor scaffold and assembly protein NifE {ECO:0000313|EMBL:KEA62593.1}; TaxID=1232683 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacterium.;" source="Marinobacterium sp. AK27.;"
nitrogenase MoFe cofactor biosynthesis protein NifE rbh
ar4r2_scaffold_956_7
GWA2_Gallionellales_59_43_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4954..6351
DNA (1398bp) protein (466aa)
nitrogenase molybdenum-iron cofactor biosynthesis protein NifN (EC:1.18.6.1) rbh
Nitrogenase molybdenum-iron cofactor biosynthesis protein NifN n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CPX8_SIDLE rbh
Tax=GWA2_Gallionellales_59_43_curated
ar4r2_scaffold_956_8
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6365..6796
DNA (432bp) protein (144aa)
hypothetical protein n=1 Tax=Lamprocystis purpurea RepID=UPI00037DF3F2
Uncharacterized protein {ECO:0000313|EMBL:EIJ41702.1}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
dinitrogenase iron-molybdenum cofactor biosynthesis protein
ar4r2_scaffold_956_9
RBG_16_Gammaproteobacteria_57_12_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6793..7287
DNA (495bp) protein (165aa)
Positive regulator of sigma E, RseC/MucC n=1 Tax=Thiorhodococcus drewsii AZ1 RepID=G2E393_9GAMM
Positive regulator of sigma E activity
Tax=RBG_16_Gammaproteobacteria_57_12_curated
ar4r2_scaffold_956_10
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7284..7766
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K2X0_AZOSB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAL93175.1}; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain BH72).;"
ar4r2_scaffold_956_11
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7784..7993
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K2W9_AZOSB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAL93174.1}; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain BH72).;"
ar4r2_scaffold_956_12
BJP_IG2103_Rhodocyclales_63_50, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8006..8296
DNA (291bp) protein (97aa)
Probable ferredoxin n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K2W8_AZOSB
fdxB; ferredoxin
Tax=BJP_IG2103_Rhodocyclales_63_50
ar4r2_scaffold_956_13
BJP_IG2103_Dechloromonas_63_51, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8308..8763
DNA (456bp) protein (152aa)
Putative uncharacterized protein n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47FX0_DECAR
hypothetical protein
Tax=BJP_IG2103_Dechloromonas_63_51
ar4r2_scaffold_956_14
RBG_16_Gammaproteobacteria_57_12_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9455..10537
DNA (1083bp) protein (361aa)
ApbE family lipoprotein n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) RepID=A3PRN8_RHOS1
ApbE family lipoprotein
Tax=RBG_16_Gammaproteobacteria_57_12_curated
ar4r2_scaffold_956_15
Sedimenticola sp. SIP-G1, Sedimenticola, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10743..11066
DNA (324bp) protein (108aa)
hypothetical protein n=1 Tax=Lamprocystis purpurea RepID=UPI000368CA40
Uncharacterized protein {ECO:0000313|EMBL:AKH21715.1}; TaxID=1543721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Sedimenticola.;" source="Sedimenticola sp. SIP-G1.;"
iron-sulfur cluster assembly accessory protein
ar4r2_scaffold_956_16
BJP_IG2103_Rhodocyclales_63_50, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11117..12010
DNA (894bp) protein (298aa)
Nitrogen fixation protein NifU n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K2W5_AZOSB rbh
nifU; nitrogen fixation protein NifU rbh
Tax=BJP_IG2103_Rhodocyclales_63_50
ar4r2_scaffold_956_17
Sideroxydans lithotrophicus, Sideroxydans, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12021..13229
DNA (1209bp) protein (403aa)
cysteine desulfurase NifS (EC:2.8.1.7) rbh
Cysteine desulfurase NifS {ECO:0000313|EMBL:ADE11045.1}; EC=2.8.1.7 {ECO:0000313|EMBL:ADE11045.1};; TaxID=580332 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Sideroxydans.;" source="Sideroxydans lithotrophicus (strain ES-1).;"
Cysteine desulfurase NifS n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CPA4_SIDLE rbh
ar4r2_scaffold_956_18
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13350..13913
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K4J3_AZOSB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAL93748.1}; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain BH72).;"
ar4r2_scaffold_956_19
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14136..15263)
DNA (1128bp) protein (376aa)
lpxB; lipid-A-disaccharide synthase (EC:2.4.1.182) rbh
Lipid A disaccharide synthase (LpxB) {ECO:0000313|EMBL:AAU90457.1}; EC=2.4.1.182 {ECO:0000313|EMBL:AAU90457.1};; TaxID=243233 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.;" source="Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath).;"
Lipid A disaccharide synthase (LpxB) n=1 Tax=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) RepID=Q60BR5_METCA rbh
ar4r2_scaffold_956_20
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15280..16377)
DNA (1098bp) protein (366aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI0003803821 rbh
degT; predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis
Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis {ECO:0000313|EMBL:BAO80588.1}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
ar4r2_scaffold_956_21
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16392..17342)
DNA (951bp) protein (317aa)
Putative oxidoreductase, Gfo/Idh/MocA family n=1 Tax=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) RepID=Q60BR7_METCA rbh
Gfo/Idh/MocA family oxidoreductase rbh
Putative oxidoreductase, Gfo/Idh/MocA family {ECO:0000313|EMBL:AAU90459.1}; TaxID=243233 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.;" source="Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath).;"
ar4r2_scaffold_956_22
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17400..18011
DNA (612bp) protein (204aa)
ribonuclease HII n=1 Tax=Perlucidibaca piscinae RepID=UPI0003B6F6F9
rnhB; ribonuclease HII
Tax=RBG_16_Betaproteobacteria_58_11_curated
ar4r2_scaffold_956_23
Pseudomonas sp. GM50, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17989..18768)
DNA (780bp) protein (260aa)
UDP-2,3-diacylglucosamine hydrolase {ECO:0000256|HAMAP-Rule:MF_00575, ECO:0000256|SAAS:SAAS00063966}; EC=3.6.1.54 {ECO:0000256|HAMAP-Rule:MF_00575, ECO:0000256|SAAS:SAAS00063978};; UDP-2,3-diacylglucosamine diphosphatase {ECO:0000256|HAMAP-Rule:MF_00575}; TaxID=1144332 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM50.;"
UDP-2,3-diacylglucosamine hydrolase n=1 Tax=Pseudomonas sp. GM50 RepID=J2RZM2_9PSED
UDP-2,3-diacylglucosamine hydrolase
ar4r2_scaffold_956_24
RBG_16_Gamma2_64_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18799..19311)
DNA (513bp) protein (171aa)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KZP6_HALNC
cyclophilin type peptidyl-prolyl cis-trans isomerase
Tax=RBG_16_Gamma2_64_10_curated
ar4r2_scaffold_956_25
Salinisphaera shabanensis, Salinisphaera, Salinisphaerales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19565..19867
DNA (303bp) protein (101aa)
RNA-binding protein {ECO:0000313|EMBL:ERJ20507.1}; EC=3.2.1.23 {ECO:0000313|EMBL:ERJ20507.1};; TaxID=1033802 species="Bacteria; Proteobacteria; Gammaproteobacteria; Salinisphaerales; Salinisphaeraceae; Salinisphaera.;" source="Salinisphaera shabanensis E1L3A.;"
RNA-binding protein n=1 Tax=Salinisphaera shabanensis E1L3A RepID=U2ER47_9GAMM
RNP-1 like RNA-binding protein
ar4r2_scaffold_956_26
Marichromatium purpuratum, Marichromatium, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20021..21394
DNA (1374bp) protein (458aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=765910 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Marichromatium.;" source="Marichromatium purpuratum 984.;"
Cysteine--tRNA ligase n=1 Tax=Marichromatium purpuratum 984 RepID=F9U176_MARPU rbh
cysteinyl-tRNA synthetase
Displaying 26 items

View Taxonomy