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ar4r2_scaffold_1962

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_1962_1
Desulfocapsa sulfexigens, Desulfocapsa, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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3..515
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) RepID=M1PTK2_DESSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGF79676.1}; TaxID=1167006 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfocapsa.;" source="Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1).;"
ar4r2_scaffold_1962_2
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(848..1777)
DNA (930bp) protein (310aa)
Probable manganese-dependent inorganic pyrophosphatase id=1731890 bin=GWB2_Desulfobacterales_56_26 species=Desulfotalea psychrophila genus=Desulfotalea taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Desulfobacterales_56_26 organism_group=Deltaproteobacteria organism_desc=Good rbh
inorganic pyrophosphatase/exopolyphosphatase rbh
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
ar4r2_scaffold_1962_3
Desulfobulbaceae bacterium BRH_c16a, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2089..2988
DNA (900bp) protein (300aa)
Uncharacterized protein (Fragment) n=1 Tax=uncultured bacterium RepID=K1YMU6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KJR96805.1}; TaxID=1629713 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae.;" source="Desulfobulbaceae bacterium BRH_c16a.;"
hypothetical protein
ar4r2_scaffold_1962_4
Desulfobulbus sp. Tol-SR, Desulfobulbus, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3008..4009
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1YRX6_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:KGO35060.1}; TaxID=1536652 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfobulbus.;" source="Desulfobulbus sp. Tol-SR.;"
TIGR00266 family protein rbh
ar4r2_scaffold_1962_5
Desulfobulbus propionicus, Desulfobulbus, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4075..4788)
DNA (714bp) protein (238aa)
Putative uncharacterized protein n=1 Tax=Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3) RepID=E8RHU2_DESPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADW18436.1}; TaxID=577650 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfobulbus.;" source="Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3).;"
ar4r2_scaffold_1962_6
Desulfocapsa sulfexigens, Desulfocapsa, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4884..5462)
DNA (579bp) protein (193aa)
Micrococcal nuclease-like nuclease n=1 Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) RepID=M1PTD4_DESSD
micrococcal nuclease-like nuclease
Micrococcal nuclease-like nuclease {ECO:0000313|EMBL:AGF79591.1}; Flags: Precursor;; TaxID=1167006 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfocapsa.;" source="Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1).;"
ar4r2_scaffold_1962_7
Desulfocapsa sulfexigens, Desulfocapsa, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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5582..6502
DNA (921bp) protein (307aa)
CheY-like receiver, AAA-type ATPase and DNA-binding domain-containing response regulator n=1 Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) RepID=M1P7Z5_DESSD rbh
CheY-like receiver, AAA-type ATPase and DNA-binding domain-containing response regulator rbh
CheY-like receiver, AAA-type ATPase and DNA-binding domain-containing response regulator {ECO:0000313|EMBL:AGF79593.1}; TaxID=1167006 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfocapsa.;" source="Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1).;"
ar4r2_scaffold_1962_8
Desulfocapsa sulfexigens, Desulfocapsa, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6462..7118
DNA (657bp) protein (219aa)
CheY-like receiver, AAA-type ATPase and DNA-binding domain-containing response regulator n=1 Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) RepID=M1P7Z5_DESSD
CheY-like receiver, AAA-type ATPase and DNA-binding domain-containing response regulator
CheY-like receiver, AAA-type ATPase and DNA-binding domain-containing response regulator {ECO:0000313|EMBL:AGF79593.1}; TaxID=1167006 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfocapsa.;" source="Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1).;"
ar4r2_scaffold_1962_9
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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7242..8450
DNA (1209bp) protein (403aa)
Major facilitator superfamily MFS_1 n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21XL8_RHOFD rbh
major facilitator transporter
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
ar4r2_scaffold_1962_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8440..9753)
DNA (1314bp) protein (438aa)
Putative C4 dicarboxylate tripartite ATP-independent periplasmic (TRAP) transporter, permease component n=1 Tax=Bordetella avium (strain 197N) RepID=Q2L1T0_BORA1 rbh
C4 dicarboxylate tripartite ATP-independent periplasmic (TRAP) transporter, permease rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
ar4r2_scaffold_1962_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9753..10292)
DNA (540bp) protein (180aa)
TRAP transporter, small subunit id=1314854 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
TRAP-type mannitol/chloroaromatic compound transport system, small permease component
Tax=GWE1_Thiobacillus_62_9_curated
ar4r2_scaffold_1962_12
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10485..11588)
DNA (1104bp) protein (368aa)
ABC transporter substrate-binding protein n=1 Tax=beta proteobacterium L13 RepID=UPI000380159F rbh
dctP; TRAP dicarboxylate transporter subunit DctP rbh
Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
ar4r2_scaffold_1962_trna_2
unknown

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comp(12068..12141)
DNA (74bp)
transferRNA Pro
ar4r2_scaffold_1962_13
Desulfobulbus sp. Tol-SR, Desulfobulbus, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12240..12602)
DNA (363bp) protein (121aa)
Putative transcriptional regulator n=1 Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) RepID=M1PJY8_DESSD
Uncharacterized protein {ECO:0000313|EMBL:KGO33362.1}; TaxID=1536652 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfobulbus.;" source="Desulfobulbus sp. Tol-SR.;"
putative transcriptional regulator
ar4r2_scaffold_1962_14
Desulfocapsa sulfexigens, Desulfocapsa, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12634..12924)
DNA (291bp) protein (97aa)
Bacterial nucleoid DNA-binding protein n=1 Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) RepID=M1NJV5_DESSD
bacterial nucleoid DNA-binding protein
Bacterial nucleoid DNA-binding protein {ECO:0000313|EMBL:AGF79864.1}; TaxID=1167006 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfocapsa.;" source="Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1).;"
ar4r2_scaffold_1962_15
Desulfocapsa sulfexigens, Desulfocapsa, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12926..15370)
DNA (2445bp) protein (815aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=1167006 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfocapsa.;" source="Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1).;"
phenylalanyl-tRNA synthetase, beta subunit (EC:6.1.1.20) rbh
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) RepID=M1P8R0_DESSD rbh
ar4r2_scaffold_1962_16

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comp(15577..16608)
DNA (1032bp) protein (344aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
phenylalanyl-tRNA synthetase, alpha subunit (EC:6.1.1.20) rbh
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=uncultured bacterium RepID=K1YT53_9BACT rbh
ar4r2_scaffold_1962_17
Desulfobulbaceae bacterium BRH_c16a, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16721..17077)
DNA (357bp) protein (119aa)
50S ribosomal protein L20 n=1 Tax=Desulfotalea psychrophila (strain LSv54 / DSM 12343) RepID=RL20_DESPS
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1629713 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae.;" source="Desulfobulbaceae bacterium BRH_c16a.;"
rplT; 50S ribosomal protein L20
ar4r2_scaffold_1962_18
Desulfocapsa sulfexigens, Desulfocapsa, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(17190..17387)
DNA (198bp) protein (66aa)
50S ribosomal protein L35 n=1 Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) RepID=M1PJY1_DESSD
LSU ribosomal protein L35P
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1167006 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfocapsa.;" source="Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1).;"
ar4r2_scaffold_1962_19
uncultured Desulfofustis sp. PB-SRB1, Desulfofustis, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17539..18129)
DNA (591bp) protein (197aa)
Translation initiation factor IF-3 n=1 Tax=uncultured Desulfofustis sp. PB-SRB1 RepID=V4IP87_9DELT
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080}; TaxID=1385624 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfofustis; environmental samples.;" source="uncultured Desulfofustis sp. PB-SRB1.;"
translation initiation factor 3 (bIF-3)
ar4r2_scaffold_1962_20
Desulfobulbus sp. Tol-SR, Desulfobulbus, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18195..20102)
DNA (1908bp) protein (636aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=1536652 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfobulbus.;" source="Desulfobulbus sp. Tol-SR.;"
threonyl-tRNA synthetase (EC:6.1.1.3) rbh
Threonine--tRNA ligase n=1 Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) RepID=M1P8Q4_DESSD rbh
ar4r2_scaffold_1962_trna_1
unknown

Not on your lists

comp(20453..20524)
DNA (72bp)
transferRNA Val
ar4r2_scaffold_1962_21
Desulfobulbus sp. Tol-SR, Desulfobulbus, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20657..21259)
DNA (603bp) protein (201aa)
Recombination protein RecR n=1 Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) RepID=M1PE49_DESSD rbh
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=1536652 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfobulbus.;" source="Desulfobulbus sp. Tol-SR.;"
DNA replication and repair protein RecR rbh
ar4r2_scaffold_1962_22
Desulfobulbaceae bacterium BRH_c16a, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21273..21593)
DNA (321bp) protein (107aa)
Nucleoid-associated protein UWK_03337 n=1 Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) RepID=M1PU44_DESSD
Nucleoid-associated protein VR65_15150 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=1629713 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae.;" source="Desulfobulbaceae bacterium BRH_c16a.;"
DNA-binding protein, YbaB/EbfC family
ar4r2_scaffold_1962_23
Desulfocapsa sulfexigens, Desulfocapsa, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21627..23495)
DNA (1869bp) protein (623aa)
DNA polymerase III, subunit gamma/tau (EC:2.7.7.7) rbh
DNA polymerase III, subunit gamma/tau {ECO:0000313|EMBL:AGF79855.1}; EC=2.7.7.7 {ECO:0000313|EMBL:AGF79855.1};; TaxID=1167006 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfocapsa.;" source="Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1).;"
DNA polymerase III, subunit gamma/tau n=1 Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) RepID=M1PJX3_DESSD rbh
ar4r2_scaffold_1962_24
unknown

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23522..23917
DNA (396bp) protein (132aa)

This feature has no annotations

ar4r2_scaffold_1962_25
Desulfobacterium autotrophicum, Desulfobacterium, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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24084..25757
DNA (1674bp) protein (558aa)
Putative Kef-type K+ transport system, membrane component n=1 Tax=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) RepID=C0QE31_DESAH rbh
putative Kef-type K+ transport system, membrane component rbh
Putative Kef-type K+ transport system, membrane component {ECO:0000313|EMBL:ACN17452.1}; TaxID=177437 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfobacterium.;" source="Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2).;"
ar4r2_scaffold_1962_26
RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25934..27094)
DNA (1161bp) protein (387aa)
Glycosyl transferase n=1 Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) RepID=M1P118_DESSD rbh
glycosyl transferase rbh
Tax=RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated
Displaying 28 items

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