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ar4r2_scaffold_1154

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_1154_1
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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59..298
DNA (240bp) protein (80aa)
50S ribosomal protein L31 n=1 Tax=Thiomicrospira halophila RepID=UPI00037E583E
50S ribosomal protein L31 type B {ECO:0000256|HAMAP-Rule:MF_00502, ECO:0000256|SAAS:SAAS00004504}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
rpmE2; 50S ribosomal protein L31
ar4r2_scaffold_1154_2
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

313..1155
DNA (843bp) protein (281aa)
Nuclease (SNase domain-containing protein) n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GFM9_NITSI
Micrococcal nuclease (Thermonuclease)-like protein {ECO:0000313|EMBL:KFZ89308.1}; TaxID=160660 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Thiobacillus prosperus.;"
nuclease
ar4r2_scaffold_1154_3
RBG_16_Gammaproteobacteria_57_12_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1222..2292
DNA (1071bp) protein (357aa)
hemE; uroporphyrinogen decarboxylase (EC:4.1.1.37) rbh
Uroporphyrinogen decarboxylase n=1 Tax=Pseudomonas stutzeri TS44 RepID=I4JQJ8_PSEST rbh
Tax=RBG_16_Gammaproteobacteria_57_12_curated
ar4r2_scaffold_1154_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2292..3008
DNA (717bp) protein (239aa)
ribosomal small subunit pseudouridine synthase A (EC:5.4.99.-)
Pseudouridine synthase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SKP5_THIDA
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
ar4r2_scaffold_1154_5
Janthinobacterium lividum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3013..3669
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=Janthinobacterium sp. CG3 RepID=UPI0003492523
DNA alkylation repair protein {ECO:0000313|EMBL:KHA77437.1}; TaxID=29581 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium lividum.;"
DNA alkylation repair enzyme family protein
ar4r2_scaffold_1154_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3723..4127)
DNA (405bp) protein (135aa)
RNA-binding S4 protein; K04762 ribosome-associated heat shock protein Hsp15 id=12497780 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
ribosome-associated heat shock protein
Tax=GWE1_Thiobacillus_62_9_curated
ar4r2_scaffold_1154_7
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4244..4534
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BZ64_NITHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADE16078.1}; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
ar4r2_scaffold_1154_8
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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4503..4853
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BYT9_NITHN
hypothetical protein
Tax=GWA2_Rhodocyclales_65_20_curated
ar4r2_scaffold_1154_9
Candidatus Methylopumilus turicensis, Candidatus Methylopumilus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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5070..5330
DNA (261bp) protein (87aa)
protein of unknown function
Uncharacterized protein {ECO:0000313|EMBL:CEN55199.1}; TaxID=1581680 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae.;" source="Methylophilaceae bacterium MMS-10A-171.;"
ar4r2_scaffold_1154_10
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5621..9493
DNA (3873bp) protein (1291aa)
FAD linked oxidase domain protein n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D8K6_9GAMM rbh
FAD-linked oxidase {ECO:0000313|EMBL:AHF00598.1}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
FAD-linked oxidase
ar4r2_scaffold_1154_11
Sulfurovum sp. NBC37-1, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

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9572..9844
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Sulfurovum sp. (strain NBC37-1) RepID=A6QAI8_SULNB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAF72497.1}; TaxID=387093 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. (strain NBC37-1).;"
ar4r2_scaffold_1154_12
Sulfurovum sp. AS07-7, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

9841..10257
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Sulfurovum sp. (strain NBC37-1) RepID=A6QAI7_SULNB
Uncharacterized protein {ECO:0000313|EMBL:KIM05886.1}; TaxID=1539062 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. AS07-7.;"
hypothetical protein
ar4r2_scaffold_1154_13
unknown

Not on your lists

10254..10349
DNA (96bp) protein (32aa)

This feature has no annotations

ar4r2_scaffold_1154_14
marine gamma proteobacterium HTCC2143, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10466..11665)
DNA (1200bp) protein (400aa)
hypothetical protein n=1 Tax=Dasania marina RepID=UPI000379C34D rbh
Uncharacterized protein {ECO:0000313|EMBL:EAW32887.1}; TaxID=247633 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; BD1-7 clade.;" source="marine gamma proteobacterium HTCC2143.;"
hypothetical protein rbh
ar4r2_scaffold_1154_15
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12120..12524)
DNA (405bp) protein (135aa)
Transcriptional regulator, XRE family n=1 Tax=Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) RepID=F6DBS4_THICA
XRE family transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:AEG31310.1}; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1).;"
ar4r2_scaffold_1154_16
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12517..12807)
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) RepID=F6DBS3_THICA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG31309.1}; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1).;"
ar4r2_scaffold_1154_trna_1
unknown

Not on your lists

comp(12976..13048)
DNA (73bp)
transferRNA Thr
ar4r2_scaffold_1154_17
unknown

Not on your lists

comp(13142..13387)
DNA (246bp) protein (82aa)

This feature has no annotations

ar4r2_scaffold_1154_18
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13442..14659)
DNA (1218bp) protein (406aa)
tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC n=1 Tax=Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) RepID=F6D8T0_THICA
tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC
tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC {ECO:0000256|SAAS:SAAS00035571}; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1).;"
ar4r2_scaffold_1154_19
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14668..15543)
DNA (876bp) protein (292aa)
Metal-dependent hydrolase HDOD n=1 Tax=Desulfurispirillum indicum (strain ATCC BAA-1389 / S5) RepID=E6W1B3_DESIS
Metal-dependent hydrolase HDOD
Tax=CG_Thiomicrospira_01
ar4r2_scaffold_1154_20
Hahella chejuensis, Hahella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15574..16446)
DNA (873bp) protein (291aa)
purU; formyltetrahydrofolate deformylase (EC:3.5.1.10) rbh
Formyltetrahydrofolate deformylase {ECO:0000256|HAMAP-Rule:MF_01927}; EC=3.5.1.10 {ECO:0000256|HAMAP-Rule:MF_01927};; Formyl-FH(4) hydrolase {ECO:0000256|HAMAP-Rule:MF_01927}; TaxID=349521 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Hahellaceae; Hahella.;" source="Hahella chejuensis (strain KCTC 2396).;"
Formyltetrahydrofolate deformylase n=1 Tax=Hahella chejuensis (strain KCTC 2396) RepID=Q2SCE9_HAHCH rbh
ar4r2_scaffold_1154_21
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16470..16976)
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BW08_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIJ35551.1}; Flags: Precursor;; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
hypothetical protein
ar4r2_scaffold_1154_22
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17022..17948
DNA (927bp) protein (309aa)
Porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000256|HAMAP-Rule:MF_00260}; Pre-uroporphyrinogen synthase {ECO:0000256|HAMAP-Rule:MF_00260}; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1).;"
Porphobilinogen deaminase n=1 Tax=Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) RepID=F6DBI6_THICA rbh
porphobilinogen deaminase rbh
ar4r2_scaffold_1154_23
Photobacterium aphoticum, Photobacterium, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17945..18679
DNA (735bp) protein (245aa)
uroporphyrinogen-III synthase (EC:4.2.1.75)
Uroporphyrinogen-III synthase {ECO:0000313|EMBL:GAL07756.1}; EC=4.2.1.75 {ECO:0000313|EMBL:GAL07756.1};; TaxID=754436 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium.;" source="Photobacterium aphoticum.;"
Uroporphyrinogen-III synthase n=1 Tax=Aeromonas diversa 2478-85 RepID=N9VJK8_9GAMM
ar4r2_scaffold_1154_24
unknown

Not on your lists

18715..19767
DNA (1053bp) protein (351aa)

This feature has no annotations

ar4r2_scaffold_1154_25
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19764..20921
DNA (1158bp) protein (386aa)
HemY-like n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31JG2_THICR
HemY-like
HemY-like {ECO:0000313|EMBL:ABB40711.1}; Flags: Precursor;; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
ar4r2_scaffold_1154_26
uncultured beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20936..21262)
DNA (327bp) protein (109aa)
Putative uncharacterized protein n=1 Tax=uncultured beta proteobacterium RepID=H5SNY2_9PROT
Putative uncharacterized protein {ECO:0000313|EMBL:BAL57868.1}; TaxID=86027 species="Bacteria; Proteobacteria; Betaproteobacteria; environmental samples.;" source="uncultured beta proteobacterium.;"
ar4r2_scaffold_1154_27
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21336..22025)
DNA (690bp) protein (230aa)
Putative uncharacterized protein n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31E57_THICR
Peptidase membrane zinc metallopeptidase {ECO:0000313|EMBL:KDN96292.1}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
hypothetical protein
ar4r2_scaffold_1154_28
Sulfuricurvum kujiense, Sulfuricurvum, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22100..22501)
DNA (402bp) protein (134aa)
PilT protein domain protein n=1 Tax=Sulfuricurvum kujiense (strain ATCC BAA-921 / DSM 16994 / JCM 11577 / YK-1) RepID=E4U427_SULKY
PilT domain-containing protein
PilT protein domain protein {ECO:0000313|EMBL:ADR35443.1}; Flags: Precursor;; TaxID=709032 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Sulfuricurvum.;" source="Sulfuricurvum kujiense (strain ATCC BAA-921 / DSM 16994 / JCM 11577 /; YK-1).;"
ar4r2_scaffold_1154_29
Sulfuricurvum kujiense, Sulfuricurvum, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22498..22743)
DNA (246bp) protein (82aa)
Prevent-host-death family protein n=1 Tax=Sulfuricurvum kujiense (strain ATCC BAA-921 / DSM 16994 / JCM 11577 / YK-1) RepID=E4U428_SULKY
prevent-host-death family protein
Prevent-host-death family protein {ECO:0000313|EMBL:ADR35444.1}; Flags: Precursor;; TaxID=709032 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Sulfuricurvum.;" source="Sulfuricurvum kujiense (strain ATCC BAA-921 / DSM 16994 / JCM 11577 /; YK-1).;"
Displaying items 1-30 of 40 in total

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