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ar4r2_scaffold_959

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_959_1
unknown

Not on your lists

comp(3..182)
DNA (180bp) protein (60aa)

This feature has no annotations

ar4r2_scaffold_959_2
unknown

Not on your lists

comp(448..825)
DNA (378bp) protein (126aa)

This feature has no annotations

ar4r2_scaffold_959_3
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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1002..1508
DNA (507bp) protein (169aa)
Ferritin {ECO:0000256|RuleBase:RU361145}; EC=1.16.3.2 {ECO:0000256|RuleBase:RU361145};; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
Ferritin Dps family protein n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4DAA6_9GAMM
ferritin
ar4r2_scaffold_959_4
gamma proteobacterium IMCC2047, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1521..1862
DNA (342bp) protein (114aa)
Putative uncharacterized protein n=1 Tax=gamma proteobacterium IMCC2047 RepID=F3KH07_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EGG98344.1}; TaxID=434085 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium IMCC2047.;"
ar4r2_scaffold_959_5
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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1895..2914
DNA (1020bp) protein (340aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
tRNA-dihydrouridine synthase n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BVC5_NITHN rbh
TIM-barrel protein, yjbN family rbh
ar4r2_scaffold_959_6
Desulfococcus multivorans, Desulfococcus, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2901..3701
DNA (801bp) protein (267aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=1121405 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfococcus.;" source="Desulfococcus multivorans DSM 2059.;"
glutamate racemase (EC:5.1.1.3)
Glutamate racemase n=1 Tax=Desulfococcus multivorans DSM 2059 RepID=S7TXS4_DESML rbh
ar4r2_scaffold_959_7
GWF2_Lentisphaerae_57_35_curated, Lentisphaerae, Bacteria

Not on your lists

comp(3698..4690)
DNA (993bp) protein (331aa)
diphosphomevalonate decarboxylase (EC:4.1.1.33) rbh
Diphosphomevalonate decarboxylase id=4098468 bin=GWF2_Lentisphaerae_57_35 species=Thioalkalimicrobium cyclicum genus=Thioalkalimicrobium taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459 rbh
Tax=GWF2_Lentisphaerae_57_35_curated
ar4r2_scaffold_959_8
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4721..5650)
DNA (930bp) protein (310aa)
Mevalonate kinase {ECO:0000313|EMBL:ABB42325.1}; EC=2.7.1.36 {ECO:0000313|EMBL:ABB42325.1};; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
Mevalonate kinase n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31EU8_THICR
GHMP kinase
ar4r2_scaffold_959_9
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5647..6651)
DNA (1005bp) protein (335aa)
Mevalonate kinase {ECO:0000313|EMBL:ABB42324.1}; EC=2.7.1.36 {ECO:0000313|EMBL:ABB42324.1};; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
Mevalonate kinase n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31EU9_THICR
GHMP kinase
ar4r2_scaffold_959_10
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6698..7867)
DNA (1170bp) protein (390aa)
Hydroxymethylglutaryl-CoA synthase n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4DCH2_9GAMM rbh
3-hydroxy-3-methylglutaryl-CoA synthase
3-hydroxy-3-methylglutaryl-CoA synthase {ECO:0000313|EMBL:AHF01881.1}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
ar4r2_scaffold_959_11
Neptuniibacter caesariensis, Neptuniibacter, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7864..8898)
DNA (1035bp) protein (345aa)
Isopentenyl-diphosphate delta-isomerase {ECO:0000256|HAMAP-Rule:MF_00354}; Short=IPP isomerase {ECO:0000256|HAMAP-Rule:MF_00354};; EC=5.3.3.2 {ECO:0000256|HAMAP-Rule:MF_00354};; Isopentenyl diphosphate:dimethylallyl diphosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00354}; Isopentenyl pyrophosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00354}; Type 2 isopentenyl diphosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00354}; TaxID=207954 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Neptuniibacter.;" source="Neptuniibacter caesariensis.;"
Isopentenyl-diphosphate delta-isomerase, FMN-dependent (EC:5.3.3.2) rbh
Isopentenyl-diphosphate delta-isomerase n=1 Tax=Neptuniibacter caesariensis RepID=Q2BIK2_NEPCE rbh
ar4r2_scaffold_959_12
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8895..9932)
DNA (1038bp) protein (346aa)
Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Tax=Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) RepID=F6DA40_THICA
hydroxymethylglutaryl-CoA reductase
Hydroxymethylglutaryl-CoA reductase {ECO:0000313|EMBL:KDN96708.1}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
ar4r2_scaffold_959_13
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10039..10602)
DNA (564bp) protein (188aa)
Elongation factor P n=1 Tax=Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) RepID=F6DCM9_THICA
elongation factor P
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1).;"
ar4r2_scaffold_959_14
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10643..11758)
DNA (1116bp) protein (372aa)
Putative uncharacterized protein n=1 Tax=Pseudomonas mendocina (strain ymp) RepID=A4XU73_PSEMY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABP84889.1}; TaxID=399739 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain ymp).;"
ar4r2_scaffold_959_15
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11877..12773
DNA (897bp) protein (299aa)
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI00036C556D rbh
Ferrous iron transporter {ECO:0000313|EMBL:KDN95816.1}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
cation diffusion facilitator family transporter rbh
ar4r2_scaffold_959_16
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12824..13681)
DNA (858bp) protein (286aa)
methylenetetrahydrofolate dehydrogenase (NADP+) (EC:1.5.1.5) rbh
Bifunctional protein FolD 1 {ECO:0000255|HAMAP-Rule:MF_01576}; Includes:; Methylenetetrahydrofolate dehydrogenase {ECO:0000255|HAMAP-Rule:MF_01576}; EC=1.5.1.5 {ECO:0000255|HAMAP-Rule:MF_01576};; Includes:; Methenyltetrahydrofolate cyclohydrolase {ECO:0000255|HAMAP-Rule:MF_01576}; EC=3.5.4.9 {ECO:0000255|HAMAP-Rule:MF_01576};; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
Bifunctional protein FolD 1 n=2 Tax=Thiomicrospira crunogena RepID=FOLD1_THICR rbh
ar4r2_scaffold_959_17
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13696..14979)
DNA (1284bp) protein (428aa)
Glutamate-1-semialdehyde 2,1-aminomutase n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4DBV6_9GAMM rbh
glutamate-1-semialdehyde 2,1-aminomutase
Tax=CG_Thiomicrospira_01
ar4r2_scaffold_959_18
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15033..15506)
DNA (474bp) protein (158aa)
Redoxin domain protein n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4DBV4_9GAMM
thioredoxin
Thioredoxin {ECO:0000313|EMBL:AHF01678.1}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
ar4r2_scaffold_959_19
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15523..16185)
DNA (663bp) protein (221aa)
Ribose-5-phosphate isomerase A {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00020824}; EC=5.3.1.6 {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00087684};; Phosphoriboisomerase A {ECO:0000256|HAMAP-Rule:MF_00170}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
ribose-5-phosphate isomerase A (EC:5.3.1.6) rbh
Ribose-5-phosphate isomerase A n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=RPIA_THICR rbh
ar4r2_scaffold_959_20
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16213..18867)
DNA (2655bp) protein (885aa)
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI000377E5CA rbh
ribonuclease E
ar4r2_scaffold_959_21
gamma proteobacterium HTCC2207, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19162..20172
DNA (1011bp) protein (337aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=314287 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; SAR92 clade.;" source="gamma proteobacterium HTCC2207.;"
Pseudouridine synthase n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YTQ7_9GAMM rbh
23S rRNA pseudouridylate synthase
ar4r2_scaffold_959_22
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20181..20831
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Thiomicrospira halophila RepID=UPI00038007B8
HAD-superfamily hydrolase
Tax=CG_Thiomicrospira_01
ar4r2_scaffold_959_23
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20828..21412)
DNA (585bp) protein (195aa)
hypothetical protein n=1 Tax=Thiomicrospira halophila RepID=UPI00037136E3
maf protein
Maf-like protein Tcr_0706 {ECO:0000255|HAMAP-Rule:MF_00528}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
ar4r2_scaffold_959_24
unknown

Not on your lists

21503..22006
DNA (504bp) protein (168aa)

This feature has no annotations

ar4r2_scaffold_959_25
Simiduia agarivorans, Simiduia, Gammaproteobacteria, Proteobacteria, Bacteria

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22010..22183
DNA (174bp) protein (58aa)
50S ribosomal protein L32 n=1 Tax=Simiduia agarivorans (strain DSM 21679 / JCM 13881 / BCRC 17597 / SA1) RepID=K4KIY6_SIMAS
50S ribosomal protein L32
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=1117647 species="Bacteria; Proteobacteria; Gammaproteobacteria; Simiduia.;" source="Simiduia agarivorans (strain DSM 21679 / JCM 13881 / BCRC 17597 /; SA1).;"
ar4r2_scaffold_959_26
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22190..22435
DNA (246bp) protein (82aa)
phosphate acyltransferase n=1 Tax=Thiomicrospira arctica RepID=UPI0003735384
fatty acid/phospholipid synthesis protein PlsX
Tax=CG_Thiomicrospira_01
Displaying 26 items

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