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ar4r2_scaffold_2532

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_2532_1
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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3..479
DNA (477bp) protein (159aa)
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI00037DB4D5
aromatic hydrocarbon degradation protein
Outer membrane protein transport protein (OMPP1/FadL/TodX family) {ECO:0000313|EMBL:ABB41045.1}; Flags: Precursor;; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
ar4r2_scaffold_2532_2
RLO_Rhodospirillales_58_28, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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595..897
DNA (303bp) protein (101aa)
Phage-related protein n=1 Tax=Bordetella avium (strain 197N) RepID=Q2KZ86_BORA1
phage protein
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_58_28_curated
ar4r2_scaffold_2532_3
unknown

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940..1128
DNA (189bp) protein (63aa)

This feature has no annotations

ar4r2_scaffold_2532_4
Sedimenticola sp. SIP-G1, Sedimenticola, Gammaproteobacteria, Proteobacteria, Bacteria

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1155..2036
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Methylophilus methylotrophus RepID=UPI00036B35FF
SAM-dependent methyltransferase {ECO:0000313|EMBL:AKH21348.1}; TaxID=1543721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Sedimenticola.;" source="Sedimenticola sp. SIP-G1.;"
HemK family modification methylase
ar4r2_scaffold_2532_5
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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2044..2817
DNA (774bp) protein (258aa)
ThiF family protein n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31IP0_THICR
UBA/THIF-type NAD/FAD binding fold protein
ThiF family protein {ECO:0000313|EMBL:ABB40983.1}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
ar4r2_scaffold_2532_6
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2862..3581)
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI000367207A
OmpA/MotB protein {ECO:0000313|EMBL:KDN95714.1}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
OmpA/MotB protein
ar4r2_scaffold_2532_7
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3578..4414)
DNA (837bp) protein (279aa)
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI00037A11E5
Biopolymer transporter ExbB {ECO:0000313|EMBL:KDN95715.1}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
MotA/TolQ/ExbB proton channel
ar4r2_scaffold_2532_8
Thioalkalivibrio thiocyanoxidans, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4509..4796)
DNA (288bp) protein (96aa)
heavy metal transporter n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00037B843E
heavy metal transporter
Heavy metal transporter {ECO:0000313|EMBL:AHE99432.1}; TaxID=713587 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio thiocyanoxidans ARh 4.;"
ar4r2_scaffold_2532_9
Methylomonas methanica, Methylomonas, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4793..7183)
DNA (2391bp) protein (797aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Methylomonas methanica (strain MC09) RepID=F9ZZB9_METMM rbh
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase rbh
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) {ECO:0000313|EMBL:AEG02312.1}; Flags: Precursor;; TaxID=857087 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomonas.;" source="Methylomonas methanica (strain MC09).;"
ar4r2_scaffold_2532_10
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(7214..8083)
DNA (870bp) protein (290aa)
Putative uncharacterized protein id=1314843 bin=GWE1_T_denit_62_9 species=Limnobacter sp. MED105 genus=Limnobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
ar4r2_scaffold_2532_11
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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8173..8817
DNA (645bp) protein (215aa)
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_01629}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D894_9GAMM
pyridoxamine 5'-phosphate oxidase
ar4r2_scaffold_2532_12
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8814..9494
DNA (681bp) protein (227aa)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
uracil-DNA glycosylase n=1 Tax=Leucothrix mucor RepID=UPI0003B53F44 rbh
uracil-DNA glycosylase rbh
ar4r2_scaffold_2532_13
unknown

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comp(9547..10026)
DNA (480bp) protein (160aa)

This feature has no annotations

ar4r2_scaffold_2532_14
Alcaligenes faecalis, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10128..10370
DNA (243bp) protein (81aa)
Thiol:disulfide interchange protein n=2 Tax=Alcaligenes RepID=M5IVG3_9BURK
disulfide interchange protein
Protein-disulfide reductase {ECO:0000313|EMBL:KGP02861.1}; TaxID=511 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes faecalis.;"
Displaying 14 items

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