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ar4r2_scaffold_1105

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_1105_1
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..702
DNA (702bp) protein (234aa)
Putative signal-transduction protein containing cAMP-binding and CBS domains n=1 Tax=Beggiatoa alba B18LD RepID=I3CDL2_9GAMM
Putative signal-transduction protein containing cAMP-binding and CBS domains {ECO:0000313|EMBL:EIJ41705.1}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
nucleotidyltransferase
ar4r2_scaffold_1105_2
Sulfuricurvum kujiense, Sulfuricurvum, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

702..1322
DNA (621bp) protein (207aa)
Exonuclease RNase T and DNA polymerase III n=1 Tax=Sulfuricurvum kujiense (strain ATCC BAA-921 / DSM 16994 / JCM 11577 / YK-1) RepID=E4U1F2_SULKY
exonuclease RNAase t and DNA polymerase III
Exonuclease RNase T and DNA polymerase III {ECO:0000313|EMBL:ADR34489.1}; TaxID=709032 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Sulfuricurvum.;" source="Sulfuricurvum kujiense (strain ATCC BAA-921 / DSM 16994 / JCM 11577 /; YK-1).;"
ar4r2_scaffold_1105_3
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1352..3430)
DNA (2079bp) protein (693aa)
Cytotoxin SubA. Serine peptidase. MEROPS family S08X n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31F73_THICR
Uncharacterized protein {ECO:0000313|EMBL:KDN96709.1}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
peptidase S8/S53 subtilisin kexin sedolisin
ar4r2_scaffold_1105_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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3547..5337
DNA (1791bp) protein (597aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037B11B5 rbh
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
ar4r2_scaffold_1105_5
Pseudomonas sp. 12M76_air, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5326..6087)
DNA (762bp) protein (254aa)
Adenosylcobinamide-GDP ribazoletransferase {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154501}; EC=2.7.8.26 {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154502};; Cobalamin synthase {ECO:0000256|HAMAP-Rule:MF_00719}; Cobalamin-5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00719}; TaxID=1461581 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 12M76_air.;"
Cobalamin synthase n=1 Tax=Pseudomonas resinovorans NBRC 106553 RepID=S6ADS7_PSERE
cobS; cobalamin synthase
ar4r2_scaffold_1105_6
Providencia rettgeri, Providencia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6162..6530)
DNA (369bp) protein (123aa)
Holo-[acyl-carrier-protein] synthase {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237208}; Short=Holo-ACP synthase {ECO:0000256|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237180};; 4'-phosphopantetheinyl transferase AcpS {ECO:0000256|HAMAP-Rule:MF_00101}; TaxID=521000 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Providencia.;" source="Providencia rettgeri DSM 1131.;"
acpS; 4'-phosphopantetheinyl transferase (EC:2.7.8.7)
Holo-[acyl-carrier-protein] synthase n=1 Tax=Providencia rettgeri DSM 1131 RepID=D4C509_PRORE
ar4r2_scaffold_1105_7
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6535..7257)
DNA (723bp) protein (241aa)
Pyridoxine 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088558}; Short=PNP synthase {ECO:0000256|HAMAP-Rule:MF_00279};; EC=2.6.99.2 {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088588};; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
pyridoxine 5'-phosphate synthase (EC:2.6.99.2)
pyridoxine 5''''-phosphate synthase n=1 Tax=Thiomicrospira arctica RepID=UPI00036BE0F0
ar4r2_scaffold_1105_8
Vibrio sp. JCM 18905, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7254..7928)
DNA (675bp) protein (225aa)
DNA repair protein recO (Recombination protein O) n=1 Tax=mine drainage metagenome RepID=E6QV66_9ZZZZ
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=1298600 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio sp. JCM 18905.;"
ar4r2_scaffold_1105_9
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7952..8845)
DNA (894bp) protein (298aa)
hypothetical protein n=1 Tax=Thiomicrospira halophila RepID=UPI00036C5661
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
GTP-binding protein Era
ar4r2_scaffold_1105_10
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8838..9533)
DNA (696bp) protein (232aa)
rnc; ribonuclease III (EC:3.1.26.3)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=1163399 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia D457.;"
Ribonuclease 3 n=1 Tax=Stenotrophomonas maltophilia D457 RepID=I0KRF7_STEMA
ar4r2_scaffold_1105_11
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9533..10291)
DNA (759bp) protein (253aa)
Signal peptidase I {ECO:0000256|RuleBase:RU003993}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU003993};; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
peptidase S26A, signal peptidase I (EC:3.4.21.89) rbh
signal peptidase I n=1 Tax=Thiomicrospira halophila RepID=UPI00035D00BA rbh
ar4r2_scaffold_1105_12
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10306..12114)
DNA (1809bp) protein (603aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1).;"
Elongation factor 4 n=1 Tax=Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) RepID=F6DCS3_THICA rbh
GTP-binding protein LepA rbh
ar4r2_scaffold_1105_13
Thiorhodospira sibirica, Thiorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12187..13620)
DNA (1434bp) protein (478aa)
Protease Do {ECO:0000313|EMBL:EGZ45057.1}; EC=3.4.21.108 {ECO:0000313|EMBL:EGZ45057.1};; Flags: Precursor;; TaxID=765914 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thiorhodospira.;" source="Thiorhodospira sibirica ATCC 700588.;"
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI00037E75EB rbh
serine peptidase
ar4r2_scaffold_1105_14
Thalassolituus oleivorans, Thalassolituus, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13635..14093)
DNA (459bp) protein (153aa)
AlgM gene product n=1 Tax=Thalassolituus oleivorans MIL-1 RepID=M5DPD8_9GAMM
protein AlgM
AlgM gene product {ECO:0000313|EMBL:CCU71353.1}; TaxID=1298593 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Thalassolituus.;" source="Thalassolituus oleivorans MIL-1.;"
ar4r2_scaffold_1105_15
Sideroxydans lithotrophicus, Sideroxydans, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14178..15785
DNA (1608bp) protein (536aa)
L-aspartate oxidase (EC:1.4.3.16) rbh
L-aspartate oxidase {ECO:0000256|RuleBase:RU362049}; EC=1.4.3.16 {ECO:0000256|RuleBase:RU362049};; TaxID=580332 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Sideroxydans.;" source="Sideroxydans lithotrophicus (strain ES-1).;"
L-aspartate oxidase n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CRC4_SIDLE rbh
ar4r2_scaffold_1105_16
unknown

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comp(15835..16092)
DNA (258bp) protein (86aa)

This feature has no annotations

ar4r2_scaffold_1105_17
Shewanella sp. ANA-3, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16153..17142)
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=Shewanella sp. (strain ANA-3) RepID=A0KSL1_SHESA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABK46780.1}; TaxID=94122 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella sp. (strain ANA-3).;"
ar4r2_scaffold_1105_18
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17172..18425)
DNA (1254bp) protein (418aa)
gamma-glutamyl phosphate reductase (EC:1.2.1.41) rbh
gamma-glutamyl phosphate reductase n=1 Tax=Gilvimarinus chinensis RepID=UPI00036F3887 rbh
Tax=CG_Thiomicrospira_01
ar4r2_scaffold_1105_19
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(18481..19506)
DNA (1026bp) protein (342aa)
DNA polymerase III, delta subunit n=1 Tax=Beggiatoa alba B18LD RepID=I3CEJ0_9GAMM
DNA polymerase III, delta subunit {ECO:0000313|EMBL:EIJ42033.1}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
DNA polymerase III subunit delta
ar4r2_scaffold_1105_20
unknown

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comp(19503..20051)
DNA (549bp) protein (183aa)
hypothetical protein
ar4r2_scaffold_1105_21
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(20075..22663)
DNA (2589bp) protein (863aa)
Leucine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000255|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00049}; Short=LeuRS {ECO:0000255|HAMAP-Rule:MF_00049};; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
Leucine--tRNA ligase n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=SYL_THICR rbh
leucyl-tRNA synthetase rbh
ar4r2_scaffold_1105_22
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22827..23204)
DNA (378bp) protein (126aa)
Cell division protein FtsB n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31G69_THICR
septum formation initiator
Cell division protein FtsB {ECO:0000256|HAMAP-Rule:MF_00599, ECO:0000256|SAAS:SAAS00014481}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
ar4r2_scaffold_1105_23
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23281..24555)
DNA (1275bp) protein (425aa)
enolase (EC:4.2.1.11) rbh
Enolase {ECO:0000255|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000255|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000255|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000255|HAMAP-Rule:MF_00318}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
Enolase n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=ENO_THICR rbh
ar4r2_scaffold_1105_24
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24615..25457)
DNA (843bp) protein (281aa)
2-dehydro-3-deoxyphosphooctonate aldolase {ECO:0000256|HAMAP-Rule:MF_00056, ECO:0000256|SAAS:SAAS00078566}; EC=2.5.1.55 {ECO:0000256|HAMAP-Rule:MF_00056, ECO:0000256|SAAS:SAAS00078538};; 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00056}; KDO-8-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00056}; Phospho-2-dehydro-3-deoxyoctonate aldolase {ECO:0000256|HAMAP-Rule:MF_00056}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
2-dehydro-3-deoxyphosphooctonate aldolase n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4DB38_9GAMM rbh
2-dehydro-3-deoxyphosphooctonate aldolase
ar4r2_scaffold_1105_25
Marinobacter sp. ES-1, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(25460..25930)
DNA (471bp) protein (157aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=1396858 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter sp. ES-1.;"
pyrG; CTP synthetase; UTP--ammonia ligase (EC:6.3.4.2)
CTP synthase n=1 Tax=Marinobacter sp. ES-1 RepID=U7FXW0_9ALTE
Displaying 25 items

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