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ar4r2_scaffold_672

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_672_1
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..817
DNA (816bp) protein (272aa)
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; EC=2.5.1.54 {ECO:0000256|PIRNR:PIRNR001361};; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000256|PIRNR:PIRNR001361}; DAHP synthase {ECO:0000256|PIRNR:PIRNR001361}; Phospho-2-keto-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54)
phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Thiomicrospira halophila RepID=UPI00035DFBF6 rbh
ar4r2_scaffold_672_2
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(910..1506)
DNA (597bp) protein (199aa)
Rhodanese domain protein n=1 Tax=Chlorobaculum parvum (strain NCIB 8327) RepID=B3QKZ9_CHLP8
Rhodanese domain-containing protein
Tax=BJP_IG2102_Gammaproteobacteria_62_140
ar4r2_scaffold_672_3
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1604..3142)
DNA (1539bp) protein (513aa)
hypothetical protein n=1 Tax=Thiomicrospira halophila RepID=UPI00036050DD rbh
membrane protein
Putative lipid II flippase MurJ {ECO:0000256|PIRNR:PIRNR002869}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
ar4r2_scaffold_672_4
Spiribacter salinus, Spiribacter, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3223..3417)
DNA (195bp) protein (65aa)
hypothetical protein n=1 Tax=Halomonas jeotgali RepID=UPI00034D0BBC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGM40254.1}; TaxID=1260251 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Spiribacter.;" source="Spiribacter salinus M19-40.;"
ar4r2_scaffold_672_5
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3488..4612)
DNA (1125bp) protein (375aa)
tRNA/tmRNA (uracil-C(5))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01011}; EC=2.1.1.35 {ECO:0000256|HAMAP-Rule:MF_01011};; tRNA (uracil(54)-C(5))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01011}; tRNA(m5U54)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01011}; tmRNA (uracil(341)-C(5))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01011}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI00037EC801
tRNA (uracil-5-)-methyltransferase
ar4r2_scaffold_672_6

Not on your lists

4647..5825
DNA (1179bp) protein (393aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QX69_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI11843.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
major facilitator superfamily MFS_1
ar4r2_scaffold_672_7
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6008..6295)
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI0003652F91
rhodanese-like protein
Tax=CG_Thiomicrospira_01
ar4r2_scaffold_672_8
Taylorella equigenitalis, Taylorella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6341..6814)
DNA (474bp) protein (158aa)
Phosphatidylglycerophosphatase A {ECO:0000256|PIRNR:PIRNR006162}; EC=3.1.3.27 {ECO:0000256|PIRNR:PIRNR006162};; Phosphatidylglycerolphosphate phosphatase A {ECO:0000256|PIRNR:PIRNR006162}; TaxID=1091497 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Taylorella.;" source="Taylorella equigenitalis 14/56.;"
Phosphatidylglycerophosphatase A n=2 Tax=Taylorella equigenitalis RepID=E8UGD5_TAYEM
pgpA; phosphatidylglycerophosphatase
ar4r2_scaffold_672_9
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6798..8033)
DNA (1236bp) protein (412aa)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00013047}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00005}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
argininosuccinate synthase (EC:6.3.4.5) rbh
argininosuccinate synthase n=1 Tax=Thiothrix flexilis RepID=UPI0003681E15
ar4r2_scaffold_672_10
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8156..9082
DNA (927bp) protein (309aa)
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI00036F87D8 rbh
phosphatidylserine decarboxylase subunit beta
Tax=CG_Thiomicrospira_01
ar4r2_scaffold_672_11
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9119..9457
DNA (339bp) protein (113aa)
nitrogen regulatory protein P-II 1 n=1 Tax=Gilvimarinus chinensis RepID=UPI00036055C7
nitrogen regulatory protein P-II 1
Nitrogen regulatory protein P-II 1 {ECO:0000313|EMBL:AHF01349.1}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
ar4r2_scaffold_672_12
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9509..10081)
DNA (573bp) protein (191aa)
Putative uncharacterized protein n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4DBS8_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF01652.1}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
ar4r2_scaffold_672_13
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10145..10726)
DNA (582bp) protein (194aa)
Probable chemoreceptor glutamine deamidase CheD {ECO:0000256|HAMAP-Rule:MF_01440}; EC=3.5.1.44 {ECO:0000256|HAMAP-Rule:MF_01440};; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
chemotaxis protein CheD n=1 Tax=Thiomicrospira arctica RepID=UPI000377981C rbh
chemotaxis protein CheD
ar4r2_scaffold_672_14
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10743..11252)
DNA (510bp) protein (170aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
hypothetical protein n=1 Tax=Thioalkalivibrio RepID=UPI000379A4A2
CMP/dCMP deaminase zinc-binding protein
ar4r2_scaffold_672_15
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11505..13091)
DNA (1587bp) protein (529aa)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008786}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
GMP synthase (EC:6.3.5.2)
GMP synthase [glutamine-hydrolyzing] n=1 Tax=Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) RepID=F6DBC0_THICA
ar4r2_scaffold_672_16
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13101..14561)
DNA (1461bp) protein (487aa)
inosine 5'-monophosphate dehydrogenase (EC:1.1.1.205)
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPDH {ECO:0000256|HAMAP-Rule:MF_01964};; EC=1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928};; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
Inosine-5'-monophosphate dehydrogenase n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4DBT3_9GAMM rbh
ar4r2_scaffold_672_17
unknown

Not on your lists

14755..15153
DNA (399bp) protein (133aa)

This feature has no annotations

ar4r2_scaffold_672_18
Nitrincola sp. A-D6, Nitrincola, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15425..16366
DNA (942bp) protein (314aa)
Cadmium, cobalt and zinc/H(+)-K(+) antiporter n=1 Tax=Halomonas boliviensis LC1 RepID=G9ECZ0_9GAMM rbh
Cation transporter {ECO:0000313|EMBL:KGK42626.1}; TaxID=1545442 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Nitrincola.;" source="Nitrincola sp. A-D6.;"
cation diffusion facilitator family transporter rbh
ar4r2_scaffold_672_19
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16438..19959)
DNA (3522bp) protein (1174aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
DNA polymerase III subunit alpha (EC:2.7.7.7) rbh
DNA polymerase III alpha subunit n=1 Tax=Methylophaga nitratireducenticrescens (strain ATCC BAA-2433 / DSM 25689 / JAM1) RepID=I1XIX3_METNJ rbh
ar4r2_scaffold_672_20
Hydrogenivirga sp. 128-5-R1-1, Hydrogenivirga, Aquificales, Aquificae, Aquificae, Bacteria

Not on your lists

comp(20014..20562)
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V027_9AQUI
Uncharacterized protein {ECO:0000313|EMBL:EDP74136.1}; TaxID=392423 species="Bacteria; Aquificae; Aquificales; Aquificaceae; Hydrogenivirga.;" source="Hydrogenivirga sp. 128-5-R1-1.;"
hypothetical protein
ar4r2_scaffold_672_21
Neisseria elongata, Neisseria, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20613..21212)
DNA (600bp) protein (200aa)
rnhB; ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=546263 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria.;" source="Neisseria elongata subsp. glycolytica ATCC 29315.;"
Ribonuclease HII n=1 Tax=Neisseria elongata subsp. glycolytica ATCC 29315 RepID=D4DME9_NEIEG
ar4r2_scaffold_672_22
Halomonas sp. A3H3, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21205..22365)
DNA (1161bp) protein (387aa)
Lipid-A-disaccharide synthase {ECO:0000256|HAMAP-Rule:MF_00392, ECO:0000256|SAAS:SAAS00093200}; EC=2.4.1.182 {ECO:0000256|HAMAP-Rule:MF_00392, ECO:0000256|SAAS:SAAS00093200};; TaxID=1346287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas sp. A3H3.;"
lipid-A-disaccharide synthase (EC:2.4.1.182)
lipid-A-disaccharide synthase n=1 Tax=Microbulbifer agarilyticus RepID=UPI000255A770 rbh
ar4r2_scaffold_672_23
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22349..23119)
DNA (771bp) protein (257aa)
acyl-ACP-UDP-N-acetylglucosamine O-acyltransferase (EC:2.3.1.129) rbh
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase {ECO:0000256|HAMAP-Rule:MF_00387, ECO:0000256|SAAS:SAAS00064156}; Short=UDP-N-acetylglucosamine acyltransferase {ECO:0000256|HAMAP-Rule:MF_00387};; EC=2.3.1.129 {ECO:0000256|HAMAP-Rule:MF_00387, ECO:0000256|SAAS:SAAS00001267};; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
UDP-N-acetylglucosamine acyltransferase n=1 Tax=Thiomicrospira halophila RepID=UPI00037E59F7 rbh
ar4r2_scaffold_672_24
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23116..23559)
DNA (444bp) protein (148aa)
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ {ECO:0000256|HAMAP-Rule:MF_00406, ECO:0000256|SAAS:SAAS00064869}; EC=4.2.1.59 {ECO:0000256|HAMAP-Rule:MF_00406, ECO:0000256|SAAS:SAAS00064862};; (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase {ECO:0000256|HAMAP-Rule:MF_00406}; Beta-hydroxyacyl-ACP dehydratase {ECO:0000256|HAMAP-Rule:MF_00406}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
3-hydroxyacyl-ACP dehydratase n=1 Tax=Thiomicrospira arctica RepID=UPI000362B8D3
3-hydroxyacyl-ACP dehydratase
ar4r2_scaffold_672_25
Azotobacter vinelandii, Azotobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23614..24663)
DNA (1050bp) protein (350aa)
UDP-3-O-acylglucosamine N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_00523}; EC=2.3.1.- {ECO:0000256|HAMAP-Rule:MF_00523};; TaxID=322710 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azotobacter vinelandii (strain DJ / ATCC BAA-1303).;"
UDP-3-O-acylglucosamine N-acyltransferase n=3 Tax=Azotobacter vinelandii RepID=C1DST6_AZOVD rbh
lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase rbh
ar4r2_scaffold_672_26
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24677..25225)
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI000374D3B5
Outer membrane chaperone Skp (OmpH)
Tax=CG_Thiomicrospira_01
ar4r2_scaffold_672_27
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25262..27637)
DNA (2376bp) protein (792aa)
Outer membrane protein assembly factor BamA n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D7Y5_9GAMM
outer membrane protein assembly complex, YaeT protein
Outer membrane protein assembly factor BamA {ECO:0000256|HAMAP-Rule:MF_01430, ECO:0000256|SAAS:SAAS00011174}; Flags: Precursor;; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
ar4r2_scaffold_672_28
unknown

Not on your lists

comp(27640..27768)
DNA (129bp) protein (43aa)

This feature has no annotations

Displaying 28 items

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