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ar4r2_scaffold_3455

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_3455_1
R_OD1_Moranbacteria_55_24, Moranbacteria, Parcubacteria, Bacteria

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comp(1..936)
DNA (936bp) protein (312aa)
ATP F0F1 synthase subunit alpha (EC:3.6.3.14)
ATP synthase subunit alpha n=1 Tax=uncultured bacterium RepID=K1XF30_9BACT rbh
Tax=RIFCSPHIGHO2_01_FULL_OD1_Moranbacteria_55_24_curated
ar4r2_scaffold_3455_2
unknown

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comp(961..1350)
DNA (390bp) protein (130aa)

This feature has no annotations

ar4r2_scaffold_3455_3

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comp(1416..1901)
DNA (486bp) protein (162aa)
F0F1 ATP synthase subunit B; K02109 F-type H+-transporting ATPase subunit b [EC:3.6.3.14] id=9219 bin=ACD15 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=ACD15 organism_group=OD1-i organism_desc=OD1-i
ATP synthase subunit B (EC:3.6.3.14)
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ar4r2_scaffold_3455_4
R_OP11_Woesebacteria_41_10, Woesebacteria, Microgenomates, Bacteria

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comp(1924..2142)
DNA (219bp) protein (73aa)
atpE; ATP synthase subunit c; K02110 F-type H+-transporting ATPase subunit c [EC:3.6.3.14] id=5083898 bin=GWA2_OP11_43_14 species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWA2_OP11_43_14 organism_group=OP11 (Microgenomates) organism_desc=GWA2_OP11_2
atpE; ATP synthase subunit c
Tax=RIFCSPHIGHO2_01_FULL_OP11_Woesebacteria_41_10_curated
ar4r2_scaffold_3455_5
R_OD1_Moranbacteria_54_31, Moranbacteria, Parcubacteria, Bacteria

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comp(2180..2941)
DNA (762bp) protein (254aa)
ATP synthase F0, A subunit; K02108 F-type H+-transporting ATPase subunit a [EC:3.6.3.14] id=9216 bin=ACD15 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=ACD15 organism_group=OD1-i organism_desc=OD1-i
atpB; ATP synthase F0 subunit A (EC:3.6.3.14)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Moranbacteria_54_31_curated
ar4r2_scaffold_3455_6
Desulfotomaculum carboxydivorans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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3204..4802
DNA (1599bp) protein (533aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=868595 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum carboxydivorans (strain DSM 14880 / VKM B-2319 /; CO-1-SRB).;"
Ribonuclease Y n=2 Tax=Desulfotomaculum RepID=F6B5Y8_DESCC rbh
2,3 cyclic-nucleotide 2-phosphodiesterase rbh
ar4r2_scaffold_3455_7
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5114..5581)
DNA (468bp) protein (156aa)
rlmH; ribosomal RNA large subunit methyltransferase H (EC:2.1.1.-)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039794}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039776};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=1128398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Gottschalkia.;" source="Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a).;"
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0B1D9_CLOA9
ar4r2_scaffold_3455_8
Bibersteinia trehalosi, Bibersteinia, Pasteurellales, Gammaproteobacteria, Proteobacteria, Bacteria

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5625..6182
DNA (558bp) protein (186aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=1263832 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Bibersteinia.;" source="Bibersteinia trehalosi USDA-ARS-USMARC-190.;"
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Bibersteinia trehalosi USDA-ARS-USMARC-192 RepID=M4R7M8_PASTR
5-formyltetrahydrofolate cyclo-ligase
ar4r2_scaffold_3455_9
Muricauda lutaonensis, Muricauda, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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6215..7726
DNA (1512bp) protein (504aa)
Sulfate permease family protein n=1 Tax=Croceibacter atlanticus (strain ATCC BAA-628 / HTCC2559 / KCTC 12090) RepID=A3UAW3_CROAH rbh
Sulfate permease {ECO:0000313|EMBL:AKA34845.1}; TaxID=516051 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Muricauda.;" source="Muricauda lutaonensis.;"
sulfate permease rbh
ar4r2_scaffold_3455_10
CG_PER_01, Peregrinibacteria, Bacteria

Not on your lists

comp(7731..8375)
DNA (645bp) protein (215aa)
Transcriptional activator protein Anr n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y2L6_9PROT
Tax=CG_PER_01
ar4r2_scaffold_3455_11
R_RIF_OD1_04_46_36, RIF-OD1-4, Parcubacteria, Bacteria

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8488..9009
DNA (522bp) protein (174aa)
Thioredoxin n=1 Tax=Propionibacterium propionicum (strain F0230a) RepID=I6XZP1_PROPF
thioredoxin
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_04_46_36_curated
ar4r2_scaffold_3455_12

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9020..9742
DNA (723bp) protein (241aa)
Cytochrome c biogenesis protein, transmembrane region n=1 Tax=uncultured bacterium RepID=K2CJ00_9BACT
Cytochrome c biogenesis protein, transmembrane region {ECO:0000313|EMBL:EKD92980.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
ar4r2_scaffold_3455_13
RHI_RIF_OD1_01_48_17, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

9758..10459
DNA (702bp) protein (234aa)
Putative uncharacterized protein n=1 Tax=sediment metagenome RepID=D9PHH6_9ZZZZ
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_01_48_17_curated
ar4r2_scaffold_3455_14
unknown

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10481..10906
DNA (426bp) protein (142aa)

This feature has no annotations

ar4r2_scaffold_3455_15
Candidatus Midichloria mitochondrii, Candidatus Midichloria, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10946..11692)
DNA (747bp) protein (249aa)
dapD; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase (EC:2.3.1.117) rbh
2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase {ECO:0000313|EMBL:AEI88609.1}; EC=2.3.1.117 {ECO:0000313|EMBL:AEI88609.1};; TaxID=696127 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Candidatus Midichloriaceae; Candidatus Midichloria.;" source="Midichloria mitochondrii (strain IricVA).;"
2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase n=1 Tax=Midichloria mitochondrii (strain IricVA) RepID=F7XVB0_MIDMI rbh
ar4r2_scaffold_3455_16
unknown

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11862..13271
DNA (1410bp) protein (470aa)

This feature has no annotations

ar4r2_scaffold_3455_17
unknown

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13359..13634
DNA (276bp) protein (92aa)

This feature has no annotations

Displaying 17 items

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