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ar4r2_scaffold_285

Search features with annotation key words

Displaying items 1-30 of 73 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_285_1
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1..861
DNA (861bp) protein (287aa)
RNA methyltransferase n=1 Tax=Clostridium sp. BL8 RepID=T0MV98_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KJZ96852.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
TrmA family RNA methyltransferase
ar4r2_scaffold_285_2
R_OD1_48_18, Parcubacteria, Bacteria

Not on your lists

904..1635
DNA (732bp) protein (244aa)
dihydrodipicolinate reductase (EC:1.3.1.26)
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Treponema succinifaciens (strain ATCC 33096 / DSM 2489 / 6091) RepID=F2NW83_TRES6
Tax=RIFCSPLOWO2_01_FULL_OD1_48_18_curated
ar4r2_scaffold_285_3
unknown

Not on your lists

1632..2102
DNA (471bp) protein (157aa)

This feature has no annotations

ar4r2_scaffold_285_4
unknown

Not on your lists

comp(2113..3471)
DNA (1359bp) protein (453aa)

This feature has no annotations

ar4r2_scaffold_285_5
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists

3559..4905
DNA (1347bp) protein (449aa)
MiaB family RNA modification protein; K06168 bifunctional enzyme involved in thiolation and methylation of tRNA id=5096209 bin=PER_GWF2_38_29 species=PER_GWF2_38_31 genus=PER_GWF2_38_31 taxon_order=PER_GWF2_38_31 taxon_class=PER_GWF2_38_31 phylum=PER tax=PER_GWF2_38_29 organism_group=PER (Peregrinibacteria) rbh
MiaB family RNA modification protein, bifunctional enzyme involved in thiolation and methylation of tRNA {ECO:0000313|EMBL:KKQ67935.1}; TaxID=1619066 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_38_29.;"
MiaB family RNA modification protein rbh
ar4r2_scaffold_285_6
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

4927..5550
DNA (624bp) protein (208aa)
Phosphorylated carbohydrates phosphatase TM_1254 n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GBA0_9BACT
Phosphorylated carbohydrates phosphatase TM_1254 {ECO:0000313|EMBL:CCH51174.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
haloacid dehalogenase
ar4r2_scaffold_285_7
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(5680..6861)
DNA (1182bp) protein (394aa)
hypothetical protein id=5091354 bin=GWC2_PER_33_13 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWC2_PER_33_13 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
Uncharacterized protein {ECO:0000313|EMBL:KKP37397.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
hypothetical protein
ar4r2_scaffold_285_8
Methylobacter tundripaludum, Methylobacter, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6865..8607)
DNA (1743bp) protein (581aa)
Xenobiotic-transporting ATPase {ECO:0000313|EMBL:EGW20532.1}; EC=3.6.3.44 {ECO:0000313|EMBL:EGW20532.1};; TaxID=697282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylobacter.;" source="Methylobacter tundripaludum SV96.;"
hypothetical protein n=1 Tax=Thiothrix disciformis RepID=UPI00037AF3AA rbh
hypothetical protein
ar4r2_scaffold_285_9
unknown

Not on your lists

comp(8617..8772)
DNA (156bp) protein (52aa)

This feature has no annotations

ar4r2_scaffold_285_10
unknown

Not on your lists

comp(8783..9010)
DNA (228bp) protein (76aa)

This feature has no annotations

ar4r2_scaffold_285_11
R_Peregrinibacteria_39_12, Peregrinibacteria, Bacteria

Not on your lists

9134..9901
DNA (768bp) protein (256aa)
transcriptional regulator TrmB id=5095474 bin=PER_GWF2_38_29 species=PER_GWF2_38_31 genus=PER_GWF2_38_31 taxon_order=PER_GWF2_38_31 taxon_class=PER_GWF2_38_31 phylum=PER tax=PER_GWF2_38_29 organism_group=PER (Peregrinibacteria)
Transcriptional regulator, TrmB
Tax=RIFCSPLOWO2_01_FULL_Peregrinibacteria_39_12_curated
ar4r2_scaffold_285_12
Nitratiruptor sp. SB155-2, Nitratiruptor, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

9914..10576
DNA (663bp) protein (221aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=387092 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Nitratiruptor.;" source="Nitratiruptor sp. (strain SB155-2).;"
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Nitratiruptor sp. (strain SB155-2) RepID=A6Q5C2_NITSB
16S ribosomal RNA methyltransferase RsmE
ar4r2_scaffold_285_13
unknown

Not on your lists

comp(10690..11292)
DNA (603bp) protein (201aa)

This feature has no annotations

ar4r2_scaffold_285_14
unknown

Not on your lists

11439..12392
DNA (954bp) protein (318aa)

This feature has no annotations

ar4r2_scaffold_285_15
CG_PER_03, Peregrinibacteria, Bacteria

Not on your lists

12492..13886
DNA (1395bp) protein (465aa)
murC; UDP-N-acetylmuramate--L-alanine ligase (EC:6.3.2.8); K01924 UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] id=5097296 bin=PER_GWF2_39_17 species=PER_GWF2_39_17 genus=PER_GWF2_39_17 taxon_order=PER_GWF2_39_17 taxon_class=PER_GWF2_39_17 phylum=PER tax=PER_GWF2_39_17 organism_group=PER (Peregrinibacteria)
murC; UDP-N-acetylmuramate--L-alanine ligase
Tax=CG_PER_03
ar4r2_scaffold_285_16
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

13886..14605
DNA (720bp) protein (240aa)
hrcA; heat-inducible transcription repressor; K03705 heat-inducible transcriptional repressor id=5802040 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
Transcriptional regulator of heat shock protein {ECO:0000313|EMBL:KKQ71986.1}; TaxID=1619055 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_38_36.;"
hypothetical protein
ar4r2_scaffold_285_17
CG_PER_02, Peregrinibacteria, Bacteria

Not on your lists

14642..15223
DNA (582bp) protein (194aa)
grpE; co-chaperone GrpE; K03687 molecular chaperone GrpE id=73139 bin=ACD51 species=ACD51 genus=ACD51 taxon_order=ACD51 taxon_class=ACD51 phylum=PER tax=ACD51 organism_group=PER (Peregrinibacteria) organism_desc=PER
grpE; co-chaperone GrpE
Tax=CG_PER_02
ar4r2_scaffold_285_18
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

15296..15745
DNA (450bp) protein (150aa)
nrdR; transcriptional regulator NrdR (EC:1.16.3.-)
Transcriptional repressor NrdR n=1 Tax=uncultured bacterium RepID=K1YY84_9BACT
Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ar4r2_scaffold_285_19
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

Not on your lists

15770..16903
DNA (1134bp) protein (378aa)
mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase (EC:2.7.8.13); K01000 phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] id=5090941 bin=GWC2_PER_33_13 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWC2_PER_33_13 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome rbh
Phospho-N-acetylmuramoyl-pentapeptide-transferase, phospho-N-acetylmuramoyl-pentapeptide-transferase {ECO:0000313|EMBL:KKP40788.1}; EC=2.7.8.13 {ECO:0000313|EMBL:KKP40788.1};; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
hypothetical protein
ar4r2_scaffold_285_20
R_OD1_Nomurabacteria_40_18, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

16900..17607
DNA (708bp) protein (236aa)
uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] id=5803064 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
ribosomal RNA small subunit methyltransferase I
Tax=RIFCSPLOWO2_01_FULL_OD1_Nomurabacteria_40_18_curated
ar4r2_scaffold_285_21
Clostridium sp. BL8, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17675..19432
DNA (1758bp) protein (586aa)
Uncharacterized protein n=1 Tax=Clostridium sp. BL8 RepID=T0PBY3_9CLOT rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB87458.1}; TaxID=1354301 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BL8.;"
feoB; ferrous iron transport protein B rbh
ar4r2_scaffold_285_22
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19487..20866
DNA (1380bp) protein (460aa)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
adenylosuccinate lyase (EC:4.3.2.2)
Adenylosuccinate lyase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW89_9GAMM rbh
ar4r2_scaffold_285_23
unknown

Not on your lists

comp(20917..21126)
DNA (210bp) protein (70aa)

This feature has no annotations

ar4r2_scaffold_285_24
R_PER_ii_55_13, PER-ii, Bacteria

Not on your lists

comp(21199..22824)
DNA (1626bp) protein (542aa)
coiled-coil id=5094774 bin=PER_GWF2_33_10 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=PER_GWF2_33_10 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
Tax=RIFCSPHIGHO2_01_FULL_PER_ii_55_13_curated
ar4r2_scaffold_285_25
RIFOXYB2_FULL_Peregrinibacteria_32_7_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(22861..24888)
DNA (2028bp) protein (676aa)
excinuclease ABC subunit B; K03702 excinuclease ABC subunit B id=5094255 bin=PER_GWF2_33_10 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=PER_GWF2_33_10 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome rbh
excinuclease ABC subunit B
Tax=RIFOXYB2_FULL_Peregrinibacteria_32_7_curated
ar4r2_scaffold_285_26
R_OP11_Daviesbacteria_39_12, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

comp(24923..25972)
DNA (1050bp) protein (350aa)
Protein-export membrane protein SecF n=1 Tax=uncultured bacterium RepID=K2DE75_9BACT
secF; protein-export membrane protein SecF
Tax=RIFCSPHIGHO2_02_FULL_OP11_Daviesbacteria_39_12_curated
ar4r2_scaffold_285_27

Not on your lists

26106..27071
DNA (966bp) protein (322aa)
sip3; Signal peptidase I (EC:3.4.21.89)
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI00031AAF6B
Signal peptidase I {ECO:0000313|EMBL:KKT06069.1}; TaxID=1618827 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_43_17.;"
ar4r2_scaffold_285_28

Not on your lists

27097..28011
DNA (915bp) protein (305aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase n=1 Tax=uncultured bacterium RepID=K2A6K3_9BACT
ar4r2_scaffold_285_29
ACD78, Gracilibacteria, Bacteria

Not on your lists

comp(28014..29078)
DNA (1065bp) protein (355aa)
hypothetical protein id=123682 bin=ACD78 species=ACD78 genus=ACD78 taxon_order=ACD78 taxon_class=ACD78 phylum=BD1-5 tax=ACD78 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5
Tax=ACD78
ar4r2_scaffold_285_30
RIFOXYD2_FULL_OD1_Magasanikbacteria_41_14_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(29078..29473)
DNA (396bp) protein (132aa)
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; K01588 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] id=5097992 bin=PER_GWF2_43_18 species=PER_GWF2_42_17 genus=PER_GWF2_42_17 taxon_order=PER_GWF2_42_17 taxon_class=PER_GWF2_42_17 phylum=PER tax=PER_GWF2_43_18 organism_group=PER (Peregrinibacteria)
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase
Tax=RIFOXYD2_FULL_OD1_Magasanikbacteria_41_14_curated
Displaying items 1-30 of 73 in total

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