ggKbase home page

ar4r2_scaffold_1890

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_1890_1
Leptonema illini, Leptonema, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

2..1384
DNA (1383bp) protein (461aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=929563 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptonema.;" source="Leptonema illini DSM 21528.;"
Dihydrolipoyl dehydrogenase n=1 Tax=Leptonema illini DSM 21528 RepID=H2CFQ7_9LEPT rbh
lpdA-1; dihydrolipoamide dehydrogenase rbh
ar4r2_scaffold_1890_2
BJP_IG2069_Spirochaetales_48_31, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(1399..3174)
DNA (1776bp) protein (592aa)
Phosphoglucomutase n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FNN2_9RHIZ
pgm; phosphoglucomutase
Tax=BJP_IG2069_Spirochaetales_48_31
ar4r2_scaffold_1890_3
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3258..3935)
DNA (678bp) protein (226aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8M309_CLOCD
RNA methyltransferase, RsmE family
ar4r2_scaffold_1890_trna_1
unknown

Not on your lists

4006..4089
DNA (84bp)
transferRNA Leu
ar4r2_scaffold_1890_4
unknown

Not on your lists

comp(4091..4297)
DNA (207bp) protein (69aa)

This feature has no annotations

ar4r2_scaffold_1890_5
Leptonema illini, Leptonema, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(4357..5472)
DNA (1116bp) protein (372aa)
Diguanylate cyclase with GAF sensor n=1 Tax=Leptonema illini DSM 21528 RepID=H2CG60_9LEPT
Diguanylate cyclase with GAF sensor {ECO:0000313|EMBL:EHQ05741.1}; TaxID=929563 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptonema.;" source="Leptonema illini DSM 21528.;"
hypothetical protein
ar4r2_scaffold_1890_trna_2
unknown

Not on your lists

5636..5708
DNA (73bp)
transferRNA Met
ar4r2_scaffold_1890_trna_3
unknown

Not on your lists

5739..5812
DNA (74bp)
transferRNA Met
ar4r2_scaffold_1890_6
Pseudoalteromonas piscicida, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5874..6629)
DNA (756bp) protein (252aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; TaxID=43662 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.;" source="Pseudoalteromonas piscicida.;"
hypothetical protein n=1 Tax=Pseudoalteromonas sp. NJ631 RepID=UPI0002E39B45
hypothetical protein
ar4r2_scaffold_1890_7
Turneriella parva, Turneriella, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

6674..8410
DNA (1737bp) protein (579aa)
OmpA/MotB domain protein n=1 Tax=Turneriella parva (strain ATCC BAA-1111 / DSM 21527 / NCTC 11395 / H) RepID=I4BAZ7_TURPD
OmpA/MotB domain protein
OmpA/MotB domain protein {ECO:0000313|EMBL:AFM14454.1}; Flags: Precursor;; TaxID=869212 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Turneriella.;" source="Turneriella parva (strain ATCC BAA-1111 / DSM 21527 / NCTC 11395 / H); (Leptospira parva).;"
ar4r2_scaffold_1890_8
unknown

Not on your lists

comp(8446..8697)
DNA (252bp) protein (84aa)

This feature has no annotations

ar4r2_scaffold_1890_9
GWF2_Bacteroidetes_38_335_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

8804..9508
DNA (705bp) protein (235aa)
Putative TatD-related DNase id=4647528 bin=GWF2_Bacteroidetes_38_335 species=Methylomicrobium alcaliphilum genus=Methylomicrobium taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
TatD family hydrolase
Tax=GWF2_Bacteroidetes_38_335_curated
ar4r2_scaffold_1890_10
Leptospira sp. Fiocruz LV4135, Leptospira, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(9528..10652)
DNA (1125bp) protein (375aa)
Cyclic dehypoxanthine futalosine synthase {ECO:0000256|HAMAP-Rule:MF_00992}; Short=Cyclic DHFL synthase {ECO:0000256|HAMAP-Rule:MF_00992};; EC=1.21.98.1 {ECO:0000256|HAMAP-Rule:MF_00992};; Dehypoxanthine futalosine cyclase {ECO:0000256|HAMAP-Rule:MF_00992}; Menaquinone biosynthetic enzyme MqnC {ECO:0000256|HAMAP-Rule:MF_00992}; TaxID=1193013 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospira sp. Fiocruz LV4135.;"
Menaquinone biosynthesis radical SAM enzyme, TIGR03699 family n=2 Tax=Leptospira santarosai RepID=M5Z5W2_9LEPT rbh
hypothetical protein rbh
ar4r2_scaffold_1890_11
unknown

Not on your lists

comp(10659..10937)
DNA (279bp) protein (93aa)

This feature has no annotations

ar4r2_scaffold_1890_12
Brachyspira murdochii, Brachyspira, Brachyspirales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(10943..11902)
DNA (960bp) protein (320aa)
Putative anti-sigma regulatory factor, serine/threonine protein kinase n=1 Tax=Brachyspira murdochii (strain ATCC 51284 / DSM 12563 / 56-150) RepID=D5U934_BRAM5
anti-sigma regulatory factor, serine/threonine protein kinase
Putative anti-sigma regulatory factor, serine/threonine protein kinase {ECO:0000313|EMBL:ADG71207.1}; TaxID=526224 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira.;" source="Brachyspira murdochii (strain ATCC 51284 / DSM 12563 / 56-150); (Serpulina murdochii).;"
ar4r2_scaffold_1890_trna_4
unknown

Not on your lists

11983..12054
DNA (72bp)
transferRNA Cys
ar4r2_scaffold_1890_trna_5
unknown

Not on your lists

12077..12160
DNA (84bp)
transferRNA Leu
ar4r2_scaffold_1890_13
Leptonema illini, Leptonema, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

12238..13089
DNA (852bp) protein (284aa)
spermidine synthase (EC:2.5.1.16)
Spermidine synthase n=1 Tax=Leptonema illini DSM 21528 RepID=H2CJR3_9LEPT rbh
Polyamine aminopropyltransferase {ECO:0000256|HAMAP-Rule:MF_00198}; Putrescine aminopropyltransferase {ECO:0000256|HAMAP-Rule:MF_00198}; Spermidine synthase {ECO:0000256|HAMAP-Rule:MF_00198}; TaxID=929563 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptonema.;" source="Leptonema illini DSM 21528.;"
ar4r2_scaffold_1890_14
Nautilia profundicola, Nautilia, Nautiliales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

13079..13756
DNA (678bp) protein (226aa)
gph; phosphoglycolate phosphatase (EC:3.1.3.18)
Phosphoglycolate phosphatase {ECO:0000256|SAAS:SAAS00077902}; EC=3.1.3.18 {ECO:0000256|SAAS:SAAS00077902};; TaxID=598659 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Nautiliales; Nautiliaceae; Nautilia.;" source="Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH).;"
hypothetical protein n=1 Tax=Geopsychrobacter electrodiphilus RepID=UPI0003632049
ar4r2_scaffold_1890_15
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13840..15276
DNA (1437bp) protein (479aa)
Sigma-54-dependent transcriptional response regulator n=2 Tax=Bacteria RepID=Q74EW8_GEOSL rbh
sigma-54-dependent transcriptional response regulator rbh
Tax=RBG_16_Deltaproteobacteria_54_11_curated
ar4r2_scaffold_1890_16
Geobacillus sp. G1w1, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15427..15945
DNA (519bp) protein (173aa)
Diguanylate cyclase/phosphodiesterase n=1 Tax=Leptonema illini DSM 21528 RepID=H2CIC2_9LEPT
Diguanylate phosphodiesterase {ECO:0000313|EMBL:KFX31257.1}; TaxID=1430331 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus.;" source="Geobacillus sp. G1w1.;"
diguanylate phosphodiesterase
Displaying 21 items

View Taxonomy