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ar4r2_scaffold_3218

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_3218_1
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..1228
DNA (1227bp) protein (409aa)
Uncharacterized protein n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BSM3_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIJ34366.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
hypothetical protein rbh
ar4r2_scaffold_3218_2
Vibrio ezurae, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

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1233..2066
DNA (834bp) protein (278aa)
hypothetical protein n=1 Tax=Thiothrix flexilis RepID=UPI0003608FBE
23S rRNA methyltransferase RlmA {ECO:0000313|EMBL:GAD78949.1}; TaxID=1219080 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio ezurae NBRC 102218.;"
rrmA; 23S rRNA m(1)G745 methyltransferase
ar4r2_scaffold_3218_3
Shewanella sp. YQH10, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2130..2363
DNA (234bp) protein (78aa)
Virulence-associated protein vagC n=1 Tax=Pantoea vagans (strain C9-1) RepID=E1SJ89_PANVC
Uncharacterized protein {ECO:0000313|EMBL:KFZ36832.1}; TaxID=1515746 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella sp. YQH10.;"
vagC; virulence-associated protein vagC
ar4r2_scaffold_3218_4
Pantoea sp. 3.5.1, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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2354..2773
DNA (420bp) protein (140aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=1522060 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. 3.5.1.;"
UPI0003D793B4 related cluster n=1 Tax=unknown RepID=UPI0003D793B4
twitching motility protein PilT
ar4r2_scaffold_3218_5
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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2779..3585
DNA (807bp) protein (269aa)
Hydrolase, TatD family n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BT59_9GAMM rbh
Hydrolase, TatD family {ECO:0000313|EMBL:EIJ34552.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
TatD family hydrolase
ar4r2_scaffold_3218_6
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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3661..5259
DNA (1599bp) protein (533aa)
Glutamate--cysteine ligase {ECO:0000256|HAMAP-Rule:MF_00578, ECO:0000256|RuleBase:RU004391}; EC=6.3.2.2 {ECO:0000256|HAMAP-Rule:MF_00578, ECO:0000256|RuleBase:RU004391};; Gamma-ECS {ECO:0000256|HAMAP-Rule:MF_00578}; Gamma-glutamylcysteine synthetase {ECO:0000256|HAMAP-Rule:MF_00578}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
glutamate/cysteine ligase (EC:6.3.2.2) rbh
Glutamate--cysteine ligase n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BVF1_9GAMM rbh
ar4r2_scaffold_3218_7
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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5503..5940
DNA (438bp) protein (146aa)
RNP-1 like RNA-binding protein n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BVF2_9GAMM
RNP-1 like RNA-binding protein {ECO:0000313|EMBL:EIJ35345.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
glycine-rich RNA binding protein
ar4r2_scaffold_3218_8
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5995..6543)
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BVF4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIJ35347.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
conserved hypothetical protein
ar4r2_scaffold_3218_9
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6555..7397)
DNA (843bp) protein (281aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
Pyrroline-5-carboxylate reductase n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BVF5_9GAMM rbh
pyrroline-5-carboxylate reductase
ar4r2_scaffold_3218_10
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7468..7794
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BVF6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIJ35349.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
hypothetical protein
ar4r2_scaffold_3218_11
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7814..8056)
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BUZ6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIJ35189.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
hypothetical protein
ar4r2_scaffold_3218_12
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8335..8832
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BUZ7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIJ35190.1}; Flags: Precursor;; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
hypothetical protein
Displaying 12 items

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