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ar4r2_scaffold_1232

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_1232_1
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..339
DNA (339bp) protein (113aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BS44_9GAMM
periplasmic sensor signal transduction histidine kinase
ar4r2_scaffold_1232_2
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(336..728)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BRC1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIJ33914.1}; Flags: Precursor;; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
ar4r2_scaffold_1232_3
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(757..2007)
DNA (1251bp) protein (417aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000365ED35 rbh
hypothetical protein rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
ar4r2_scaffold_1232_4
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2007..5111)
DNA (3105bp) protein (1035aa)
Heavy metal efflux pump, CzcA family n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BRC0_9GAMM rbh
Heavy metal efflux pump, CzcA family {ECO:0000313|EMBL:EIJ33913.1}; Flags: Precursor;; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
heavy metal efflux pump CzcA rbh
ar4r2_scaffold_1232_5
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5115..6170)
DNA (1056bp) protein (352aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BXE5_9GAMM rbh
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:EIJ36038.1}; Flags: Precursor;; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
secretion protein HlyD
ar4r2_scaffold_1232_6
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6284..6787)
DNA (504bp) protein (168aa)
Transcriptional regulator, LuxR family n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BXE6_9GAMM
Transcriptional regulator, LuxR family {ECO:0000313|EMBL:EIJ36039.1}; Flags: Precursor;; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
hypothetical protein
ar4r2_scaffold_1232_7
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6967..7509
DNA (543bp) protein (181aa)
Cytochrome b561 n=1 Tax=Pseudomonas mendocina (strain NK-01) RepID=F4DM45_PSEMN
cytochrome b561
Cytochrome b561 {ECO:0000313|EMBL:AEB59167.1}; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
ar4r2_scaffold_1232_8
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7506..8030)
DNA (525bp) protein (175aa)
Regulatory protein LuxR n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BXE7_9GAMM
Regulatory protein LuxR {ECO:0000313|EMBL:EIJ36040.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
LuxR family transcriptional regulator
ar4r2_scaffold_1232_9
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8083..9699)
DNA (1617bp) protein (539aa)
hypothetical protein n=1 Tax=alpha proteobacterium SCGC AAA027-C06 RepID=UPI0003767B9A rbh
Membrane protein {ECO:0000313|EMBL:KJZ45548.1}; TaxID=294 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens.;"
membrane protein
ar4r2_scaffold_1232_10
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9801..10325)
DNA (525bp) protein (175aa)
Regulatory protein LuxR n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BXE7_9GAMM
Regulatory protein LuxR {ECO:0000313|EMBL:EIJ36040.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
hypothetical protein
ar4r2_scaffold_1232_11
Sulfurovum sp. AR, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

10565..11593
DNA (1029bp) protein (343aa)
hypothetical protein n=1 Tax=Psychromonas ossibalaenae RepID=UPI0003816BB2
Uncharacterized protein {ECO:0000313|EMBL:EIF51339.1}; TaxID=1165841 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. AR.;"
hypothetical protein
ar4r2_scaffold_1232_12
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11643..12893
DNA (1251bp) protein (417aa)
Sulfide dehydrogenase (Flavocytochrome), flavoprotein subunit {ECO:0000313|EMBL:EIJ36047.1}; EC=1.8.2.- {ECO:0000313|EMBL:EIJ36047.1};; Flags: Precursor;; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
Sulfide dehydrogenase (Flavocytochrome), flavoprotein subunit n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BXF4_9GAMM rbh
FAD-dependent pyridine nucleotide-disulfide oxidoreductase rbh
ar4r2_scaffold_1232_13
RBG_16_Gallionellales_57_15_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12989..13402
DNA (414bp) protein (138aa)
hypothetical protein n=1 Tax=Thiothrix disciformis RepID=UPI000364AEF8
hypothetical protein
Tax=RBG_16_Gallionellales_57_15_curated
ar4r2_scaffold_1232_14
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13413..13961
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Thiothrix disciformis RepID=UPI000382A63A
Diheme cytochrome c {ECO:0000313|EMBL:EIM01327.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
cytochrome C
ar4r2_scaffold_1232_15
RBG_16_Gallionellales_57_15_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13974..14585
DNA (612bp) protein (204aa)
hypothetical protein n=1 Tax=Thiothrix disciformis RepID=UPI00037E37F9
cytochrome b561 family protein
Tax=RBG_16_Gallionellales_57_15_curated
ar4r2_scaffold_1232_16
RifOxyB12_full_Sideroxydans_59_6_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14595..15263
DNA (669bp) protein (223aa)
hypothetical protein n=1 Tax=Thiothrix disciformis RepID=UPI00036A153A rbh
transcriptional regulator rbh
Tax=RifOxyB12_full_Sideroxydans_59_6_curated
ar4r2_scaffold_1232_17
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15265..16368
DNA (1104bp) protein (368aa)
Histidine kinase id=1941782 bin=GWE2_Gallionellales_58_10 species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small rbh
histidine kinase rbh
Tax=RBG_16_Betaproteobacteria_56_24_curated
ar4r2_scaffold_1232_18
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16365..16895)
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BNV3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIJ33046.1}; Flags: Precursor;; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
hypothetical protein
ar4r2_scaffold_1232_19
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16915..18297)
DNA (1383bp) protein (461aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BPU8_9GAMM rbh
(dimethylallyl)adenosine tRNA methylthiotransferase rbh
ar4r2_scaffold_1232_20
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18463..19128
DNA (666bp) protein (222aa)
SH3 type 3 domain protein n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BPU9_9GAMM
SH3 type 3 domain protein {ECO:0000313|EMBL:EIJ33392.1}; Flags: Precursor;; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
ar4r2_scaffold_1232_21
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19171..19503)
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BPY0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIJ33423.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
ar4r2_scaffold_1232_22
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19521..19931)
DNA (411bp) protein (137aa)
DNA polymerase III, chi subunit {ECO:0000313|EMBL:EIJ33422.1}; EC=2.7.7.7 {ECO:0000313|EMBL:EIJ33422.1};; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
DNA polymerase III, chi subunit n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BPX9_9GAMM
DNA polymerase III chi subunit HolC
Displaying 22 items

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