ggKbase home page

ar4r2_scaffold_3392

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_3392_1
unknown

Not on your lists

comp(3..89)
DNA (87bp) protein (29aa)

This feature has no annotations

ar4r2_scaffold_3392_2
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(132..1733)
DNA (1602bp) protein (534aa)
Uncharacterized protein n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BP04_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIJ33097.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
peptidase
ar4r2_scaffold_3392_3
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1884..2390)
DNA (507bp) protein (169aa)
Rare lipoprotein B n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BN13_9GAMM
LPS-assembly lipoprotein LptE {ECO:0000256|HAMAP-Rule:MF_01186, ECO:0000256|SAAS:SAAS00074334}; Flags: Precursor;; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
ar4r2_scaffold_3392_4
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2390..4981)
DNA (2592bp) protein (864aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
leuS; leucyl-tRNA synthetase (EC:6.1.1.4) rbh
Leucine--tRNA ligase n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BN12_9GAMM rbh
ar4r2_scaffold_3392_5
unknown

Not on your lists

comp(5063..5230)
DNA (168bp) protein (56aa)

This feature has no annotations

ar4r2_scaffold_3392_6
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5472..6260
DNA (789bp) protein (263aa)
Uncharacterized protein n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BZV8_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIJ36901.1}; Flags: Precursor;; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
hypothetical protein
ar4r2_scaffold_3392_7
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6307..6771
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BZV9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIJ36902.1}; Flags: Precursor;; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
ar4r2_scaffold_3392_8
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6808..7371
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BZW0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIJ36903.1}; Flags: Precursor;; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
ar4r2_scaffold_3392_9
Desulfobulbaceae bacterium BRH_c16a, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7429..8586
DNA (1158bp) protein (386aa)
Uncharacterized protein n=1 Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) RepID=M1P701_DESSD rbh
Uncharacterized protein {ECO:0000313|EMBL:KJS02576.1}; TaxID=1629713 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae.;" source="Desulfobulbaceae bacterium BRH_c16a.;"
Protein of unknown function (DUF1625) rbh
ar4r2_scaffold_3392_10
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8635..9099)
DNA (465bp) protein (155aa)
N utilization substance protein B homolog n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BQ92_9GAMM
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
NusB antitermination factor
ar4r2_scaffold_3392_11
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9106..9582)
DNA (477bp) protein (159aa)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
ribH; 6,7-dimethyl-8-ribityllumazine synthase (EC:6.3.3.-)
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BQ93_9GAMM
ar4r2_scaffold_3392_12
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9595..10227)
DNA (633bp) protein (211aa)
3,4-dihydroxy-2-butanone 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00180}; Short=DHBP synthase {ECO:0000256|HAMAP-Rule:MF_00180};; EC=4.1.99.12 {ECO:0000256|HAMAP-Rule:MF_00180};; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
3,4-dihydroxy-2-butanone 4-phosphate synthase (EC:3.5.4.25)
3,4-dihydroxy-2-butanone 4-phosphate synthase n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BQ94_9GAMM
Displaying 12 items

View Taxonomy