ggKbase home page

ar4r2_scaffold_4906

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_4906_1
unknown

Not on your lists

comp(1..108)
DNA (108bp) protein (36aa)

This feature has no annotations

ar4r2_scaffold_4906_2
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(105..371)
DNA (267bp) protein (89aa)
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
ar4r2_scaffold_4906_3
Psychrobacter sp. JCM 18900, Psychrobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(463..1860)
DNA (1398bp) protein (466aa)
Putative esterase of the alpha-beta hydrolase superfamily n=1 Tax=Rhodanobacter denitrificans RepID=M4NIY4_9GAMM rbh
Lipoprotein {ECO:0000313|EMBL:GAF53132.1}; TaxID=1298608 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Psychrobacter.;" source="Psychrobacter sp. JCM 18900.;"
putative esterase of the alpha-beta hydrolase superfamily rbh
ar4r2_scaffold_4906_4
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1860..4121)
DNA (2262bp) protein (754aa)
Uncharacterized protein n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BRT6_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIJ34079.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
fadE; acyl-coenzyme A dehydrogenase rbh
ar4r2_scaffold_4906_5
Thioalkalivibrio thiocyanoxidans, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4241..4792)
DNA (552bp) protein (184aa)
hypothetical protein n=1 Tax=Thioalkalivibrio RepID=UPI00036A72A4
carboxymuconolactone decarboxylase
Carboxymuconolactone decarboxylase {ECO:0000313|EMBL:AHE98974.1}; TaxID=713587 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio thiocyanoxidans ARh 4.;"
ar4r2_scaffold_4906_6
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4810..5421)
DNA (612bp) protein (204aa)
NADH dehydrogenase (EC:1.6.99.3)
Uncharacterized protein n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BTX4_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIJ34817.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
ar4r2_scaffold_4906_7
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5506..6108)
DNA (603bp) protein (201aa)
Transcriptional regulator, TetR family n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BTX2_9GAMM
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EIJ34815.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
TetR family transcriptional regulator
ar4r2_scaffold_4906_8
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6177..7190
DNA (1014bp) protein (338aa)
Uncharacterized protein n=1 Tax=Caenispirillum salinarum AK4 RepID=K9GPT1_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKV26674.1}; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
hypothetical protein
ar4r2_scaffold_4906_9
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7178..7693)
DNA (516bp) protein (172aa)
DoxX family protein n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BZW8_9GAMM
DoxX family protein {ECO:0000313|EMBL:EIJ36911.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
doxX family protein
ar4r2_scaffold_4906_10
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7804..8055
DNA (252bp) protein (84aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BNR6_9GAMM
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EIJ33009.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
RNA polymerase sigma factor SigK
ar4r2_scaffold_4906_11
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8110..8544)
DNA (435bp) protein (145aa)
Putative uncharacterized protein n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47DP9_DECAR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ47032.1}; Flags: Precursor;; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
ar4r2_scaffold_4906_12
unknown

Not on your lists

8650..9027
DNA (378bp) protein (126aa)

This feature has no annotations

ar4r2_scaffold_4906_13
Reinekea blandensis, Reinekea, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9099..9473)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BKC9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EAR07434.1}; TaxID=314283 species="Bacteria; Proteobacteria; Gammaproteobacteria; Reinekea.;" source="Reinekea blandensis MED297.;"
hypothetical protein
ar4r2_scaffold_4906_14
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9557..10342
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BNI4_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIJ32927.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
hypothetical protein rbh
ar4r2_scaffold_4906_15
Thalassolituus oleivorans, Thalassolituus, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10339..11115
DNA (777bp) protein (259aa)
hypothetical protein n=1 Tax=Thiothrix flexilis RepID=UPI00037EF4D4 rbh
membrane protein rbh
Membrane protein {ECO:0000313|EMBL:CCU71228.1}; TaxID=1298593 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Thalassolituus.;" source="Thalassolituus oleivorans MIL-1.;"
ar4r2_scaffold_4906_16
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11139..11801
DNA (663bp) protein (221aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BNI5_9GAMM rbh
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:EIJ32928.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
two component transcriptional regulator, winged helix family rbh
ar4r2_scaffold_4906_17
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11777..13066
DNA (1290bp) protein (430aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BNI6_9GAMM rbh
integral membrane sensor signal transduction histidine kinase rbh
ar4r2_scaffold_4906_18
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13177..13434
DNA (258bp) protein (86aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BNR6_9GAMM
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EIJ33009.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
RNA polymerase sigma factor SigK
Displaying 18 items

View Taxonomy