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ar4r2_scaffold_2129

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_2129_1
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..853
DNA (852bp) protein (284aa)
tuf; elongation factor Tu (EC:3.6.5.3)
Elongation factor Tu n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D8Y6_9GAMM rbh
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
ar4r2_scaffold_2129_2
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1024..1335
DNA (312bp) protein (104aa)
30S ribosomal protein S10 n=1 Tax=Thiomicrospira halophila RepID=UPI00036CC18C
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
rpsJ; 30S ribosomal protein S10
ar4r2_scaffold_2129_3
Aeromonas hydrophila, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1395..2033
DNA (639bp) protein (213aa)
50S ribosomal protein L3 n=6 Tax=Aeromonas veronii RepID=F4DGF6_AERVB
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=1354302 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas hydrophila 4AK4.;"
50S ribosomal protein L3
ar4r2_scaffold_2129_4
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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2046..2666
DNA (621bp) protein (207aa)
50S ribosomal protein L4 n=1 Tax=Thiomicrospira arctica RepID=UPI000382C65B
50S ribosomal protein L4
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1).;"
ar4r2_scaffold_2129_5
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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2663..2956
DNA (294bp) protein (98aa)
50S ribosomal protein L23 n=1 Tax=Thiomicrospira arctica RepID=UPI00036062E5
50S ribosomal protein L23
Tax=CG_Thiomicrospira_01
ar4r2_scaffold_2129_6
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2967..3800
DNA (834bp) protein (278aa)
50S ribosomal protein L2 n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D8Y1_9GAMM rbh
50S ribosomal protein L2
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
ar4r2_scaffold_2129_7
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3811..4086
DNA (276bp) protein (92aa)
30S ribosomal protein S19 n=1 Tax=Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) RepID=F6D971_THICA
30S ribosomal protein S19
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1).;"
ar4r2_scaffold_2129_8
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4097..4432
DNA (336bp) protein (112aa)
50S ribosomal protein L22 n=1 Tax=Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) RepID=F6D972_THICA
50S ribosomal protein L22
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1).;"
ar4r2_scaffold_2129_9
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4443..5141
DNA (699bp) protein (233aa)
30S ribosomal protein S3 n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D8X8_9GAMM rbh
30S ribosomal protein S3
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
ar4r2_scaffold_2129_10
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5157..5570
DNA (414bp) protein (138aa)
50S ribosomal protein L16 n=1 Tax=Microbulbifer variabilis RepID=UPI000366B047
50S ribosomal protein L16
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1).;"
ar4r2_scaffold_2129_11
Idiomarina sp. MCCC 1A10513, Idiomarina, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5572..5760
DNA (189bp) protein (63aa)
50S ribosomal protein L29 n=2 Tax=Idiomarina loihiensis RepID=RL29_IDILO
50S ribosomal protein L29
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=1517416 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Idiomarinaceae; Idiomarina.;" source="Idiomarina sp. MCCC 1A10513.;"
ar4r2_scaffold_2129_12
Oleispira antarctica, Oleispira, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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5757..6017
DNA (261bp) protein (87aa)
30S ribosomal protein S17 n=1 Tax=Oleispira antarctica RB-8 RepID=R4YQP7_OLEAN
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=698738 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Oleispira.;" source="Oleispira antarctica RB-8.;"
30S ribosomal protein S17
ar4r2_scaffold_2129_13
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6132..6500
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D8X4_9GAMM
50S ribosomal protein L14
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
ar4r2_scaffold_2129_14
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6514..6825
DNA (312bp) protein (104aa)
50S ribosomal protein L24 n=1 Tax=Thiomicrospira halophila RepID=UPI000376B80F
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
rplX; 50S ribosomal protein L24
ar4r2_scaffold_2129_15
Methylophaga frappieri, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6841..7380
DNA (540bp) protein (180aa)
50S ribosomal protein L5 n=1 Tax=Methylophaga aminisulfidivorans MP RepID=F5SWW4_9GAMM
50S ribosomal protein L5
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=754477 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylophaga frappieri (strain ATCC BAA-2434 / DSM 25690 / JAM7).;"
ar4r2_scaffold_2129_16
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7389..7694
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=RS14_THICR
30S ribosomal protein S14
Tax=CG_Thiomicrospira_01
ar4r2_scaffold_2129_17
Shewanella amazonensis, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7719..8114
DNA (396bp) protein (132aa)
30S ribosomal protein S8 n=1 Tax=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) RepID=RS8_SHEAM
rpsH; 30S ribosomal protein S8
30S ribosomal protein S8 {ECO:0000255|HAMAP-Rule:MF_01302}; TaxID=326297 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella amazonensis (strain ATCC BAA-1098 / SB2B).;"
ar4r2_scaffold_2129_18
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8126..8659
DNA (534bp) protein (178aa)
50S ribosomal protein L6 n=1 Tax=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) RepID=RL6_BURTA
rplF; ribosomal protein L6
Tax=CG_Thiomicrospira_01
ar4r2_scaffold_2129_19
Alteromonas sp. SN2, Alteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8670..9023
DNA (354bp) protein (118aa)
50S ribosomal protein L18 n=1 Tax=Thiothrix disciformis RepID=UPI00037870CB
50S ribosomal protein L18
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=715451 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alteromonas.;" source="Alteromonas sp. (strain SN2).;"
ar4r2_scaffold_2129_20
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9035..9553
DNA (519bp) protein (173aa)
30S ribosomal protein S5 n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D8W7_9GAMM
30S ribosomal protein S5
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
ar4r2_scaffold_2129_21
Succinatimonas sp. CAG:777, Succinatimonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9556..9738
DNA (183bp) protein (61aa)
50S ribosomal protein L30 n=1 Tax=Succinatimonas sp. CAG:777 RepID=R5EYK6_9GAMM
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=1262974 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Succinivibrionaceae; Succinatimonas; environmental samples.;" source="Succinatimonas sp. CAG:777.;"
rpmD; 50S ribosomal protein L30
ar4r2_scaffold_2129_22
Piscirickettsia salmonis, Piscirickettsia, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9738..10175
DNA (438bp) protein (146aa)
50S ribosomal protein L15 n=1 Tax=Piscirickettsia salmonis LF-89 = ATCC VR-1361 RepID=U4TNF2_PISSA
50S ribosomal protein L15
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=1238 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Piscirickettsia.;" source="Piscirickettsia salmonis.;"
ar4r2_scaffold_2129_23
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


10178..11488
DNA (1311bp) protein (437aa)
Protein translocase subunit SecY n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31IW2_THICR rbh
secY; preprotein translocase subunit SecY rbh
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
ar4r2_scaffold_2129_24
Cycloclasticus sp. P1, Cycloclasticus, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11568..11924
DNA (357bp) protein (119aa)
30S ribosomal protein S13 n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=RS13_THICR
rpsM; 30S ribosomal protein S13
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=385025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Cycloclasticus.;" source="Cycloclasticus sp. (strain P1).;"
ar4r2_scaffold_2129_25
Marinobacter sp. C1S70, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11944..12339
DNA (396bp) protein (132aa)
30S ribosomal protein S11 n=9 Tax=Marinobacter RepID=RS11_MARAV
30S ribosomal protein S11
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1396859 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter sp. C1S70.;"
ar4r2_scaffold_2129_26
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


12355..12975
DNA (621bp) protein (207aa)
30S ribosomal protein S4 n=1 Tax=Thiomicrospira halophila RepID=UPI000370AF27 rbh
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
30S ribosomal protein S4
ar4r2_scaffold_2129_27
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13011..13994
DNA (984bp) protein (328aa)
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6) rbh
DNA-directed RNA polymerase subunit alpha n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=RPOA_THICR rbh
Tax=CG_Thiomicrospira_01
ar4r2_scaffold_2129_28
Endozoicomonas numazuensis, Endozoicomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


14011..14385
DNA (375bp) protein (125aa)
50S ribosomal protein L17 n=1 Tax=Dasania marina RepID=UPI000379F2F4
50S ribosomal protein L17
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=1137799 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Hahellaceae; Endozoicomonas.;" source="Endozoicomonas numazuensis.;"
ar4r2_scaffold_2129_29
Aeromonas hydrophila, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14451..15185
DNA (735bp) protein (245aa)
TatD family hydrolase n=1 Tax=Simonsiella muelleri ATCC 29453 RepID=U6Q2A3_9NEIS
Deoxyribonuclease {ECO:0000313|EMBL:KER65716.1}; TaxID=644 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas hydrophila.;"
deoxyribonuclease
ar4r2_scaffold_2129_30
Prevotella sp. CAG:485, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15178..15450
DNA (273bp) protein (91aa)
UBA/THIF-type NAD/FAD binding protein n=1 Tax=Prevotella sp. CAG:485 RepID=R7EUL8_9BACT
UBA/THIF-type NAD/FAD binding protein {ECO:0000313|EMBL:CDE06654.1}; TaxID=1262927 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:485.;"
MoeB
Displaying 30 items

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