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ar4r2_scaffold_11460

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_11460_1
unknown

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1..126
DNA (126bp) protein (42aa)

This feature has no annotations

ar4r2_scaffold_11460_2
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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126..1409
DNA (1284bp) protein (428aa)
FolC bifunctional folylpolyglutamate synthase/dihydrofolate synthase n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31HH1_THICR rbh
bifunctional folylpolyglutamate synthase/dihydrofolate synthase rbh
Tax=CG_Thiomicrospira_01
ar4r2_scaffold_11460_3
unknown

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1399..2040
DNA (642bp) protein (214aa)

This feature has no annotations

ar4r2_scaffold_11460_4
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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2355..3869
DNA (1515bp) protein (505aa)
amidophosphoribosyltransferase (EC:2.4.2.14) rbh
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1).;"
Amidophosphoribosyltransferase n=1 Tax=Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) RepID=F6DC14_THICA rbh
ar4r2_scaffold_11460_5
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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3859..5046
DNA (1188bp) protein (396aa)
O-succinylhomoserine sulfhydrylase n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D8F8_9GAMM rbh
O-succinylhomoserine sulfhydrylase
O-succinylhomoserine sulfhydrylase {ECO:0000313|EMBL:AHF01434.1}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
ar4r2_scaffold_11460_6
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5043..5336)
DNA (294bp) protein (98aa)
RNA-binding protein YhbY n=1 Tax=Vibrio gazogenes RepID=UPI000393DA15
RNA-binding protein
RNA-binding protein {ECO:0000313|EMBL:AHF01433.1}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
ar4r2_scaffold_11460_7
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

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5550..6182
DNA (633bp) protein (211aa)
Ribosomal RNA large subunit methyltransferase E {ECO:0000256|HAMAP-Rule:MF_01547}; EC=2.1.1.166 {ECO:0000256|HAMAP-Rule:MF_01547};; 23S rRNA Um2552 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; rRNA (uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
Ribosomal RNA large subunit methyltransferase E n=1 Tax=Pseudomonas putida CSV86 RepID=L1LW29_PSEPU
23S rRNA methyltransferase
ar4r2_scaffold_11460_8
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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6198..8180
DNA (1983bp) protein (661aa)
ATP-dependent metalloprotease FtsH (EC:3.6.4.3) rbh
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1).;"
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) RepID=F6DC18_THICA rbh
ar4r2_scaffold_11460_9
Rubinisphaera brasiliensis, Rubinisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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8190..8573
DNA (384bp) protein (128aa)
dihydropteroate synthase (EC:2.5.1.15)
Dihydropteroate synthase {ECO:0000256|RuleBase:RU361205}; Short=DHPS {ECO:0000256|RuleBase:RU361205};; EC=2.5.1.15 {ECO:0000256|RuleBase:RU361205};; Dihydropteroate pyrophosphorylase {ECO:0000256|RuleBase:RU361205}; TaxID=756272 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rubinisphaera.;" source="Rubinisphaera brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 /; NBRC 103401 / IFAM 1448) (Planctomyces brasiliensis).;"
Dihydropteroate synthase n=1 Tax=Planctomyces brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) RepID=F0SSZ5_PLABD
ar4r2_scaffold_11460_10
Thioalkalivibrio nitratireducens, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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8557..8973
DNA (417bp) protein (139aa)
folP_[H]; Dihydropteroate synthase (EC:2.5.1.15)
Dihydropteroate synthase {ECO:0000256|RuleBase:RU361205}; Short=DHPS {ECO:0000256|RuleBase:RU361205};; EC=2.5.1.15 {ECO:0000256|RuleBase:RU361205};; Dihydropteroate pyrophosphorylase {ECO:0000256|RuleBase:RU361205}; TaxID=1255043 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 /; ALEN2).;"
hypothetical protein n=1 Tax=Thioalkalivibrio sp. AKL17 RepID=UPI000371BB4D
ar4r2_scaffold_11460_11
Vibrio metschnikovii, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

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8996..10336
DNA (1341bp) protein (447aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327};; TaxID=675813 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio metschnikovii CIP 69.14.;"
Phosphoglucosamine mutase n=1 Tax=Vibrio metschnikovii CIP 69.14 RepID=C9P1A9_VIBME rbh
phosphoglucosamine mutase rbh
ar4r2_scaffold_11460_12
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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10616..11377
DNA (762bp) protein (254aa)
triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase {ECO:0000255|HAMAP-Rule:MF_00147}; Short=TIM {ECO:0000255|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000255|HAMAP-Rule:MF_00147};; Triose-phosphate isomerase {ECO:0000255|HAMAP-Rule:MF_00147}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
Triosephosphate isomerase n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=TPIS_THICR
ar4r2_scaffold_11460_13
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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11387..11728
DNA (342bp) protein (114aa)
Preprotein translocase, SecG subunit n=1 Tax=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) RepID=Q60B09_METCA
secG; preprotein translocase subunit SecG
Preprotein translocase, SecG subunit {ECO:0000313|EMBL:AAU93200.1}; TaxID=243233 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.;" source="Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath).;"
ar4r2_scaffold_11460_trna_1
unknown

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11747..11828
DNA (82bp)
transferRNA Leu
ar4r2_scaffold_11460_14
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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11884..12240
DNA (357bp) protein (119aa)
nuoA; NADH dehydrogenase I subunit A (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01394};; NADH dehydrogenase I subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; NDH-1 subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; NUO1 {ECO:0000256|HAMAP-Rule:MF_01394}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
NADH-quinone oxidoreductase subunit A id=1326642 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
ar4r2_scaffold_11460_15
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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12231..12707
DNA (477bp) protein (159aa)
NADH dehydrogenase subunit B (EC:1.6.5.3) rbh
NADH-quinone oxidoreductase subunit B {ECO:0000255|HAMAP-Rule:MF_01356}; EC=1.6.5.11 {ECO:0000255|HAMAP-Rule:MF_01356};; NADH dehydrogenase I subunit B {ECO:0000255|HAMAP-Rule:MF_01356}; NDH-1 subunit B {ECO:0000255|HAMAP-Rule:MF_01356}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
NADH-quinone oxidoreductase subunit B n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=NUOB_THICR rbh
ar4r2_scaffold_11460_16
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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12729..13400
DNA (672bp) protein (224aa)
NADH-quinone oxidoreductase subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01357};; NADH dehydrogenase I subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; NDH-1 subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
hypothetical protein n=1 Tax=Thiomicrospira halophila RepID=UPI00037F6EC2
NADH dehydrogenase subunit C
ar4r2_scaffold_11460_17
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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13402..14655
DNA (1254bp) protein (418aa)
NADH dehydrogenase subunit D (EC:1.6.5.3) rbh
NADH-quinone oxidoreductase subunit D {ECO:0000255|HAMAP-Rule:MF_01358}; EC=1.6.5.11 {ECO:0000255|HAMAP-Rule:MF_01358};; NADH dehydrogenase I subunit D {ECO:0000255|HAMAP-Rule:MF_01358}; NDH-1 subunit D {ECO:0000255|HAMAP-Rule:MF_01358}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
NADH-quinone oxidoreductase subunit D n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=NUOD_THICR rbh
ar4r2_scaffold_11460_18
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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14655..15137
DNA (483bp) protein (161aa)
NADH-quinone oxidoreductase, E subunit n=1 Tax=Beggiatoa alba B18LD RepID=I3CGL3_9GAMM
NADH-quinone oxidoreductase, E subunit {ECO:0000313|EMBL:EIJ42756.1}; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
NADH-quinone oxidoreductase subunit E
ar4r2_scaffold_11460_19
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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15144..16418
DNA (1275bp) protein (425aa)
NADH dehydrogenase {ECO:0000313|EMBL:KDN95484.1}; EC=1.6.99.5 {ECO:0000313|EMBL:KDN95484.1};; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
NADH-quinone oxidoreductase subunit F (EC:1.6.99.5) rbh
NADH dehydrogenase I chain F n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31HF5_THICR rbh
ar4r2_scaffold_11460_20
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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16458..18140
DNA (1683bp) protein (561aa)
NADH dehydrogenase subunit G (EC:1.6.5.3) rbh
NADH dehydrogenase I chain G n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31HF4_THICR rbh
NADH dehydrogenase I chain G {ECO:0000313|EMBL:ABB41419.1}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
Displaying 21 items

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