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ar4r2_scaffold_1220

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_1220_1
unknown

Not on your lists

75..512
DNA (438bp) protein (146aa)

This feature has no annotations

ar4r2_scaffold_1220_2
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(505..1419)
DNA (915bp) protein (305aa)
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase {ECO:0000255|HAMAP-Rule:MF_00388}; EC=3.5.1.- {ECO:0000255|HAMAP-Rule:MF_00388};; UDP-3-O-acyl-GlcNAc deacetylase {ECO:0000255|HAMAP-Rule:MF_00388}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=LPXC_THICR rbh
lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase rbh
ar4r2_scaffold_1220_3
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1509..2792)
DNA (1284bp) protein (428aa)
cell division protein FtsA n=1 Tax=Thiomicrospira arctica RepID=UPI00037198F4 rbh
cell division protein FtsA rbh
Cell division protein ftsA {ECO:0000256|PIRNR:PIRNR003101}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
ar4r2_scaffold_1220_4
Pseudomonas sp. 21, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2801..3568)
DNA (768bp) protein (256aa)
cell division protein FtsQ n=1 Tax=Pseudomonas nitroreducens RepID=UPI0003093BE9
cell division protein FtsQ
Cell division protein FtsQ {ECO:0000256|HAMAP-Rule:MF_00911, ECO:0000256|SAAS:SAAS00006985}; TaxID=1619948 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 21.;"
ar4r2_scaffold_1220_5
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3565..4476)
DNA (912bp) protein (304aa)
D-alanine--D-alanine ligase (EC:6.3.2.4) rbh
D-alanine--D-alanine ligase {ECO:0000255|HAMAP-Rule:MF_00047}; EC=6.3.2.4 {ECO:0000255|HAMAP-Rule:MF_00047};; D-Ala-D-Ala ligase {ECO:0000255|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000255|HAMAP-Rule:MF_00047}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
D-alanine--D-alanine ligase n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=DDL_THICR rbh
ar4r2_scaffold_1220_6
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4478..5866)
DNA (1389bp) protein (463aa)
UDP-N-acetylmuramate--L-alanine ligase {ECO:0000255|HAMAP-Rule:MF_00046}; EC=6.3.2.8 {ECO:0000255|HAMAP-Rule:MF_00046};; UDP-N-acetylmuramoyl-L-alanine synthetase {ECO:0000255|HAMAP-Rule:MF_00046}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
UDP-N-acetylmuramate--L-alanine ligase n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=MURC_THICR rbh
UDP-N-acetylmuramate--L-alanine ligase rbh
ar4r2_scaffold_1220_7
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5891..6970)
DNA (1080bp) protein (360aa)
murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase (EC:2.4.1.227)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=MURG_THICR
Tax=CG_Thiomicrospira_01
ar4r2_scaffold_1220_8
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6967..8232)
DNA (1266bp) protein (422aa)
Lipid II flippase FtsW n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=FTSW_THICR rbh
cell cycle protein rbh
Putative lipid II flippase FtsW {ECO:0000255|HAMAP-Rule:MF_00913}; Cell division protein FtsW {ECO:0000255|HAMAP-Rule:MF_00913}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
ar4r2_scaffold_1220_9
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8225..9580)
DNA (1356bp) protein (452aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084542}; EC=6.3.2.9 {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084342};; D-glutamic acid-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00639}; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase {ECO:0000256|HAMAP-Rule:MF_00639}; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1).;"
UDP-N-acetylmuramoylalanine--D-glutamate ligase n=1 Tax=Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) RepID=F6D9Q9_THICA rbh
UDP-N-acetylmuramoylalanine--D-glutamate ligase rbh
ar4r2_scaffold_1220_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9585..10667)
DNA (1083bp) protein (361aa)
Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC:2.7.8.13) rbh
Phospho-N-acetylmuramoyl-pentapeptide-transferase {ECO:0000256|HAMAP-Rule:MF_00038}; EC=2.7.8.13 {ECO:0000256|HAMAP-Rule:MF_00038};; UDP-MurNAc-pentapeptide phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00038}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
phospho-N-acetylmuramoyl-pentapeptide-transferase n=1 Tax=Dyella ginsengisoli RepID=UPI0003488B30 rbh
ar4r2_scaffold_1220_11
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10681..12129)
DNA (1449bp) protein (483aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC:6.3.2.10) rbh
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=1 Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=Q1GYZ7_METFK rbh
Tax=BJP_IG2102_Gammaproteobacteria_62_140
ar4r2_scaffold_1220_12
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12117..13532)
DNA (1416bp) protein (472aa)
hypothetical protein n=1 Tax=Amphritea japonica RepID=UPI0003804E2E rbh
UDP-N-acetylmuramyl-tripeptide synthetase
Tax=CG_Thiomicrospira_01
ar4r2_scaffold_1220_13
endosymbiont of Tevnia jerichonana, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13536..15194)
DNA (1659bp) protein (553aa)
Peptidoglycan synthase FtsI {ECO:0000313|EMBL:EGW54671.1}; EC=2.4.1.129 {ECO:0000313|EMBL:EGW54671.1};; TaxID=1049564 species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="endosymbiont of Tevnia jerichonana (vent Tica).;"
peptidoglycan glycosyltransferase (EC:2.4.1.129) rbh
cell division protein n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI0003800303 rbh
ar4r2_scaffold_1220_14
Cycloclasticus zancles, Cycloclasticus, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15191..15517)
DNA (327bp) protein (109aa)
Cell division protein FtsL n=3 Tax=Cycloclasticus RepID=K0C1M4_CYCSP
Cell division protein, FtsL-like protein
Cell division protein FtsL {ECO:0000256|HAMAP-Rule:MF_00910}; TaxID=1198232 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Cycloclasticus.;" source="Cycloclasticus zancles 7-ME.;"
ar4r2_scaffold_1220_15
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15549..16766)
DNA (1218bp) protein (406aa)
cell division protein FtsZ n=1 Tax=Thiomicrospira arctica RepID=UPI00035FD21C rbh
cell division protein FtsZ rbh
Tax=CG_Thiomicrospira_01
ar4r2_scaffold_1220_16
Salmonella enterica, Salmonella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16794..17705)
DNA (912bp) protein (304aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=1271863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella.;" source="Salmonella enterica subsp. enterica serovar Cubana str. CFSAN002050.;"
Ribosomal RNA small subunit methyltransferase H n=4 Tax=Salmonella enterica subsp. enterica serovar Cubana RepID=S5HQD1_SALET rbh
16S rRNA methyltransferase rbh
ar4r2_scaffold_1220_17
R_Gammaproteobacteria_45_9, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17706..18194)
DNA (489bp) protein (163aa)
Protein MraZ n=2 Tax=Thiomicrospira crunogena RepID=MRAZ_THICR
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_45_9_curated
ar4r2_scaffold_1220_18
Candidatus Methylopumilus turicensis, Candidatus Methylopumilus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(18973..19857)
DNA (885bp) protein (295aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=1581680 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae.;" source="Methylophilaceae bacterium MMS-10A-171.;"
hypothetical protein n=1 Tax=Chitiniphilus shinanonensis RepID=UPI0003816B32
yraL; putative methyltransferase
ar4r2_scaffold_1220_19
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19906..21192
DNA (1287bp) protein (429aa)
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI00037338E1
lipoprotein-like
Tax=CG_Thiomicrospira_01
ar4r2_scaffold_1220_20
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21189..21560
DNA (372bp) protein (124aa)
UPF0102 protein Tcr_1695 n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Y1695_THICR
hypothetical protein
UPF0102 protein Tcr_1695 {ECO:0000255|HAMAP-Rule:MF_00048}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
ar4r2_scaffold_1220_21
Legionella norrlandica, Legionella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21572..22159
DNA (588bp) protein (196aa)
Putative uncharacterized protein n=1 Tax=Legionella drancourtii LLAP12 RepID=G9EJY9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KGP63772.1}; TaxID=1498499 species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.;" source="Legionella norrlandica.;"
lipoproteins
ar4r2_scaffold_1220_22
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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22268..23701
DNA (1434bp) protein (478aa)
Peptidase M48 Ste24p n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D8M7_9GAMM
peptidase M48
Peptidase M48 {ECO:0000313|EMBL:AHF00577.1}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
ar4r2_scaffold_1220_23
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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23881..24261
DNA (381bp) protein (127aa)
Monoheme cytochrome SoxX (Sulfur oxidation) n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31I23_THICR
cytochrome c, class I
Monoheme cytochrome SoxX (Sulfur oxidation) {ECO:0000313|EMBL:ABB41200.1}; Flags: Precursor;; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
ar4r2_scaffold_1220_24
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24299..24766
DNA (468bp) protein (156aa)
Thiosulfate-binding protein SoxY n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31I24_THICR
sulfur oxidation protein SoxY-like
Thiosulfate-binding protein SoxY {ECO:0000313|EMBL:ABB41199.1}; Flags: Precursor;; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
ar4r2_scaffold_1220_25
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24827..25141
DNA (315bp) protein (105aa)
Sulfur compound chelating protein SoxZ n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31I25_THICR
Phosphatase {ECO:0000313|EMBL:KDN96886.1}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
hypothetical protein
ar4r2_scaffold_1220_26
Chlorobaculum tepidum, Chlorobaculum, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

25228..26112
DNA (885bp) protein (295aa)
SoxAX cytochrome complex subunit A {ECO:0000250|UniProtKB:Q8RLX0}; EC=1.8.2.- {ECO:0000269|PubMed:18641134};; Cytochrome c551 subunit monoheme {ECO:0000303|PubMed:18641134}; Protein SoxA {ECO:0000250|UniProtKB:Q8RLX0}; Sulfur oxidizing protein A {ECO:0000312|EMBL:AAM72253.1}; Thiosulfate-oxidizing multienzyme system protein SoxA {ECO:0000250|UniProtKB:D7A6E5}; Short=TOMES protein SoxA {ECO:0000250|UniProtKB:D7A6E5};; Flags: Precursor;; TaxID=194439 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobaculum.;" source="Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 /; TLS).;"
SoxAX cytochrome complex subunit A n=1 Tax=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) RepID=SOXA_CHLTE
soxA; sulfur oxidation protein SoxA
ar4r2_scaffold_1220_27
Nitrincola lacisaponensis, Nitrincola, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26234..26869
DNA (636bp) protein (212aa)
7-carboxy-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_00917}; Short=CDG synthase {ECO:0000256|HAMAP-Rule:MF_00917};; EC=4.3.99.3 {ECO:0000256|HAMAP-Rule:MF_00917};; Queuosine biosynthesis protein QueE {ECO:0000256|HAMAP-Rule:MF_00917}; TaxID=267850 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Nitrincola.;" source="Nitrincola lacisaponensis.;"
7-cyano-7-deazaguanine reductase n=1 Tax=Marinobacterium stanieri RepID=UPI00025580BD
organic radical activating enzyme
ar4r2_scaffold_1220_28
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27111..27968)
DNA (858bp) protein (286aa)
Ribosome-binding ATPase YchF n=1 Tax=Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) RepID=F6D9T9_THICA rbh
GTP-binding protein YchF rbh
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1).;"
Displaying 28 items

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