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ar4r2_scaffold_4026

Search features with annotation key words

Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_4026_1
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(36..320)
DNA (285bp) protein (95aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000256|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000256|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00122};; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
glutamyl-tRNA amidotransferase subunit C n=1 Tax=Methylomonas sp. MK1 RepID=UPI000377D5BF
gatC; aspartyl/glutamyl-tRNA amidotransferase subunit C
ar4r2_scaffold_4026_2
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(453..1274)
DNA (822bp) protein (274aa)
hypothetical protein n=1 Tax=Thiomicrospira halophila RepID=UPI00037C0C3F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB42588.1}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
ar4r2_scaffold_4026_3
Thalassolituus oleivorans, Thalassolituus, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1538..2161)
DNA (624bp) protein (208aa)
N-(5'-phosphoribosyl)anthranilate isomerase {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123216}; Short=PRAI {ECO:0000256|HAMAP-Rule:MF_00135};; EC=5.3.1.24 {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123176};; TaxID=1208320 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Thalassolituus.;" source="Thalassolituus oleivorans R6-15.;"
N-(5'-phosphoribosyl)anthranilate isomerase n=1 Tax=Thalassolituus oleivorans MIL-1 RepID=M5DR99_9GAMM
N-(5'-phosphoribosyl)anthranilate isomerase
ar4r2_scaffold_4026_4
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2158..2949)
DNA (792bp) protein (264aa)
tRNA pseudouridine synthase A (EC:4.2.1.70) rbh
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
tRNA pseudouridine synthase A n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=TRUA_THICR rbh
ar4r2_scaffold_4026_5
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2980..4002)
DNA (1023bp) protein (341aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:0000256|HAMAP-Rule:MF_02121};; Aspartate-beta-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
Aspartate-semialdehyde dehydrogenase n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D8G7_9GAMM rbh
semialdehyde dehydrogenase
ar4r2_scaffold_4026_6
unknown

Not on your lists

comp(4040..4297)
DNA (258bp) protein (86aa)

This feature has no annotations

ar4r2_scaffold_4026_7
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4378..5343)
DNA (966bp) protein (322aa)
peptidase M23 n=1 Tax=Thiomicrospira halophila RepID=UPI0003744243
peptidase M23B
Tax=CG_Thiomicrospira_01
ar4r2_scaffold_4026_8
Thalassolituus oleivorans, Thalassolituus, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5366..6436)
DNA (1071bp) protein (357aa)
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=1208320 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Thalassolituus.;" source="Thalassolituus oleivorans R6-15.;"
3-isopropylmalate dehydrogenase n=1 Tax=Microbulbifer agarilyticus RepID=UPI0002558309 rbh
ar4r2_scaffold_4026_9
unknown

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6542..6673
DNA (132bp) protein (44aa)

This feature has no annotations

ar4r2_scaffold_4026_10
Methylophaga lonarensis, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6686..7003)
DNA (318bp) protein (106aa)
Nucleoside:H+ symporter:Major facilitator superfamily protein n=1 Tax=Methylophaga lonarensis MPL RepID=M7PJH8_9GAMM
Nucleoside:H+ symporter:Major facilitator superfamily protein {ECO:0000313|EMBL:EMR14060.1}; TaxID=1286106 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylophaga lonarensis MPL.;"
major facilitator superfamily transporter
Displaying 10 items

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