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ar4r2_scaffold_1372_8

Organism: ALUMROCK_MS4_Thiotrichales-related_46_269_curated

near complete RP 47 / 55 MC: 3 BSCG 49 / 51 MC: 5 ASCG 11 / 38 MC: 2
Location: 10120..13572

Top 3 Functional Annotations

View all annotations
Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=187272 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Alkalilimnicola.;" source="Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 52.8
  • Coverage: 1143.0
  • Bit_score: 1181
  • Evalue 0.0
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI000370D935 similarity UNIREF
DB: UNIREF100
  • Identity: 53.0
  • Coverage: 1133.0
  • Bit_score: 1193
  • Evalue 0.0
  • rbh
transcription-repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 52.8
  • Coverage: 1143.0
  • Bit_score: 1181
  • Evalue 0.0
  • rbh

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Taxonomy

Alkalilimnicola ehrlichii → Alkalilimnicola → Chromatiales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3453
GTGATTTTCAAGTTGCCTTTATGGAATCAACAACAACATAAAACGCTGTATTGGTCTGGTCTTAACGAGGGTGGCATAGCGCTTGCCTTGTCACAGTTAGGAGAGTCACTCAACAAGCCTTTGCTCGTTATCACCGATAGCGCTCAACAAGCGCAACAACTCGCTAACGAGCTGAATTTTTACGCTAGCGACAACAACAGCAGTCAAAGCGCCCTCCTCTTTCCTGATTGGGAAACGCTACCTTATGACCGATTTTCGCCACATCAGGACATTATTTCCGCACGTTTGCAAGCACTCTACCGCCAAGCAACCACCCCCCCGCGTTTCCTGATTGCGCACATTGCCACGCTCATGCATCAGCTTATTCCAGCGGACTACCTACTCAGCCGCAGTTTTGTGCTATCAACAGGACAGCAAATTAATCGCCATGAGTTTACGCGCAACCTGGAAACTAACGGTTATCAGCGCGTCAGTCAGGTGATGGAACATGGTGAATATGCACTCAGAGGCGCATTGCTCGATGTCTTTCCAATGGGGGGCGAGCAGCCATTACGCATTGACTGGCTCGACGATGAGATTGATTCCATTCGTCAATTCGATGTCAGTAGCCAACTGACCACGCAAAAAATAGACGCGATTACCCTACTGCCTGCTAAAGAATATCCGCTAGATAATGACAGCATTCATTTGTTTCGCCAACAATGGCGCGATGCTTTCCCTGATAATAATACCCGCACCAACTGGCTCTACCAAGCCGTTTCTAAAGGACAAAGTGCTAGCGGATTAGAATATTATCTGCCCTTATTCTTTGAGCAGCTCAGCGCCATCACCGACTATCTCACCAACGACACGCATCTGGTGTGGGTCGGTCAAGTCGTAAGCGCAGCAGAAGCTTTTTATCGGGATGTTGAAGAACGCTACACCATTGGTAAACTAGACCCCAATCATCCGCTATTGCCACCCGAACGCGTATTTCTAGCCGCCAATGAACTTTTGGCTCGCATGAAGCCTTTTTATCGCATTGAATTATCCAGTGAAGCCAAAGCCGACAATAGCCAACACTGGGCGATGAAACCCCTGCCCGACCTAAGCATTGACCCCAGCAGACCCGACGCACTCTGGCGGCTCGCTGACTGGTTGCCGAGCCTAGCCAGCAACACTAAAGTGCTGTTAGTGGCGGAGTCAGTCGGGCGACGCGAAGTATTAATTGAGTTGTTACAAAAATCCAAGCTCAAGGCACAGCGTGCCGAAAACTGGTCGGATTTTTTAACATCGCCAGAATCGGGTTTATATTTAACCGTCGCTCCGCTCACGCACAATCTATGGCACGACGACTTAGTGGTCATCAGCGAGGTCTCGCTTTATGCCAGCCAAGTAAGACAAACCCGTCGCCGCAAACGCAGTGCGCATCAAGACTTTACCGACGGTATTCGTTCGTTGGCTGAATTGGATATTGGCTCTGCCGTAGTGCATCTCGAACATGGTGTGGGTCGATACATGGGGTTAGAAACCCTCACCTTGGGTGATATTCCGCGTGAATTTGTCGCTCTAGAATACGCGGGTGGCGATAAGCTTTATGTCCCCATCACCAATTTACATTTGATTAGTCGTTATGCAGGCGCCGATGCCGATCATGCTCCTTGGCACAAGCTAGGCAACGACCGTTGGAACAAAGCACGTAAACAAGCCATTGAAAAGGTACGTGATGTCGCTGCAGAACTGCTCGACTTGTACGCTGCGCGCGAAGCGCGTCGCGGTCATGCTTTTGCTGATGCAGGTGCTGATTACCTGCGCTTTAGCGCAGGGTTCGCTTTCGAGACAACGCCTGACCAACAAAACGCCATTGATGCCGTGATTGCCGATATGCAATCTCCTCGTCCCATGGATCGTTTAGTCTGTGGCGATGTGGGTTTTGGTAAAACCGAAGTGGCGATGCGCGCCGCTTTTATGGCAGTGCACGGTGGTAAACAGGTGGTGGTATTAGTGCCAACCACCCTGTTAGCGAATCAACATTTACAAAACTTCCGCGATCGCTTTGCTGACTGGCCTGTCAAAATCGAGGCGCTTTCTCGTTTTGGCGGTTCGGGCAATCAAGCCAAAGTGATTGAACAGGTTGCCGAAGGTAAAGTAGATATCGTTATCGGTACGCATAAGCTGTTGCAAAGTGATATGAAATACCATGATTTAGGTCTCATTATCATCGATGAAGAACACCGTTTTGGCGTTAAGCAAAAAGAATTCCTAAAAAGCCTGCGCACCCAAGTCGATATTCTTGCCATGACGGCCACCCCCATTCCGCGCACGCTTTCCATGGCCTTCGCTCAGTTGCGTGACATGTCGATTATTGCCACACCACCAGCTAAACGTCAATCGATTCAAACCTTTGTGCAAGACTGGAATGCGGAACTGGCCAAAGAAGCTTGCACCCGTGAGTTGCGTCGTGGCGGACAGGTGTATGTGTTGTTTAATGACGTCGAGCGTATGCCAACCTTTGTCGATGAACTCAGCCAATTAATGCCCGATGCACGTATTGCCATGGCCCATGGTCAAATGCCTGAACGTGAATTAGAGCGTGTCATGCGTGATTTCTACCATCAAAATTACAATATTTTGGTTTCCACCACCATTATTGAAACGGGTATTGATATTCCCAATGCCAATACCATCCTCATTCATCGTGCCGACAAGTTTGGCTTGGCACAACTGCACCAACTACGCGGTCGCGTTGGCCGTTCACACCACAAAGCCTATGCCTACCTATTTACACCCCCTAAAGAAGCACTCAGCGCCGACGCAGTTAAGCGACTAGAAGCGATTGCACGCCACGACCAATTGGGTTCTGGTTTTGCCTTAGCCAGTCAAGATTTGGAAATTCGCGGTGCTGGCGAGCTGCTTGGACATGAACAAAGCGGTCAACTGCAAGAAATTGGTTTTGAACTTTACACGCAACTGCTAGATAAGGCAGTACGCGCTTATCGACGCGGTGAAGTGCCTAATTTAGAAGATAACAGTGAACAGTGTGATGTTGACTTAGCCATACCTGCACTCATTCCCGACGACTATCTACCCGACATTTCAGCGCGTTTGGTACTTTATAAGCGCATTAACGCCGCCGAAGATCAAGCGGCCCTACATCAGCTTCAAGTCGAAATGGTCAACCGCTTTGGCTTACTGCCCGATGCCTGCAAAAACCTGTTTGCCATTATGCAACTCAAACAACAAGCGTTGTCTTTGGGCATTCATAAAATCGAAGCCACTAGCAACCAGATTAAATTGCACTTTTTGGCTAAAACCCAAGTTGAACCGCTCAAACTCATTCAACTGATACAACAACACCCTAAAATTTATAAACTCGACGGACCAAACAAGTTAAAATGGCAAGGTAATATCAGCGAGGCATCAGACAGGCTTGCTGCCGTTGAACACTTACTCAACCAACTTACCCCATCTTGA
PROTEIN sequence
Length: 1151
VIFKLPLWNQQQHKTLYWSGLNEGGIALALSQLGESLNKPLLVITDSAQQAQQLANELNFYASDNNSSQSALLFPDWETLPYDRFSPHQDIISARLQALYRQATTPPRFLIAHIATLMHQLIPADYLLSRSFVLSTGQQINRHEFTRNLETNGYQRVSQVMEHGEYALRGALLDVFPMGGEQPLRIDWLDDEIDSIRQFDVSSQLTTQKIDAITLLPAKEYPLDNDSIHLFRQQWRDAFPDNNTRTNWLYQAVSKGQSASGLEYYLPLFFEQLSAITDYLTNDTHLVWVGQVVSAAEAFYRDVEERYTIGKLDPNHPLLPPERVFLAANELLARMKPFYRIELSSEAKADNSQHWAMKPLPDLSIDPSRPDALWRLADWLPSLASNTKVLLVAESVGRREVLIELLQKSKLKAQRAENWSDFLTSPESGLYLTVAPLTHNLWHDDLVVISEVSLYASQVRQTRRRKRSAHQDFTDGIRSLAELDIGSAVVHLEHGVGRYMGLETLTLGDIPREFVALEYAGGDKLYVPITNLHLISRYAGADADHAPWHKLGNDRWNKARKQAIEKVRDVAAELLDLYAAREARRGHAFADAGADYLRFSAGFAFETTPDQQNAIDAVIADMQSPRPMDRLVCGDVGFGKTEVAMRAAFMAVHGGKQVVVLVPTTLLANQHLQNFRDRFADWPVKIEALSRFGGSGNQAKVIEQVAEGKVDIVIGTHKLLQSDMKYHDLGLIIIDEEHRFGVKQKEFLKSLRTQVDILAMTATPIPRTLSMAFAQLRDMSIIATPPAKRQSIQTFVQDWNAELAKEACTRELRRGGQVYVLFNDVERMPTFVDELSQLMPDARIAMAHGQMPERELERVMRDFYHQNYNILVSTTIIETGIDIPNANTILIHRADKFGLAQLHQLRGRVGRSHHKAYAYLFTPPKEALSADAVKRLEAIARHDQLGSGFALASQDLEIRGAGELLGHEQSGQLQEIGFELYTQLLDKAVRAYRRGEVPNLEDNSEQCDVDLAIPALIPDDYLPDISARLVLYKRINAAEDQAALHQLQVEMVNRFGLLPDACKNLFAIMQLKQQALSLGIHKIEATSNQIKLHFLAKTQVEPLKLIQLIQQHPKIYKLDGPNKLKWQGNISEASDRLAAVEHLLNQLTPS*