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ar4r2_scaffold_520

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_520_1
RLO_Sulfurimonas_36_12, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

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1..552
DNA (552bp) protein (184aa)
Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1RB61_9CHLA id=124501 bin=ACD78 species=Parachlamydia acanthamoebae genus=Parachlamydia taxon_order=Chlamydiales taxon_class=Chlamydiia phylum=Chlamydiae tax=ACD78 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5
putative autotransporter protein,putative Ig domain-containing protein
Tax=RifCSPlowO2_12_Sulfurimonas_36_12_curated
ar4r2_scaffold_520_2

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comp(640..2745)
DNA (2106bp) protein (702aa)
Uncharacterized protein n=1 Tax=uncultured bacterium (gcode 4) RepID=K2F9F1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKE27726.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
ar4r2_scaffold_520_3

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comp(2864..3274)
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=uncultured bacterium (gcode 4) RepID=K2F688_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKE26586.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
ar4r2_scaffold_520_4
unknown

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comp(3327..4073)
DNA (747bp) protein (249aa)

This feature has no annotations

ar4r2_scaffold_520_5

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comp(4195..6012)
DNA (1818bp) protein (606aa)
rmr:Rmar_0623 threonyl-tRNA synthetase; K01868 threonyl-tRNA synthetase [EC:6.1.1.3] id=34030 bin=ACD2 species=ACD2 genus=ACD2 taxon_order=ACD2 taxon_class=ACD2 phylum=BD1-5 tax=ACD2 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5 rbh
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
thrS; threonyl-tRNA synthetase (EC:6.1.1.3) rbh
ar4r2_scaffold_520_6
GWE2_Spirochaetes_31_10_curated, Spirochaetes, Bacteria

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comp(6109..6711)
DNA (603bp) protein (201aa)
thrH; phosphoserine phosphatase/homoserine phosphotransferase protein (EC:3.1.3.3 2.7.1.39)
Phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein id=1928121 bin=GWE2_Spirochaete_31_10 species=Reinekea blandensis genus=Reinekea taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE2_Spirochaete_31_10 organism_group=Spirochaetes organism_desc=Good +
Tax=GWE2_Spirochaetes_31_10_curated
Phosphoserine to serine Jill Banfield (11/8/16)
ar4r2_scaffold_520_7
CG_PER_02, Peregrinibacteria, Bacteria

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6983..8017
DNA (1035bp) protein (345aa)
pilT1; twitching mobility protein Pilt; K02669 twitching motility protein PilT id=5097680 bin=PER_GWF2_43_18 species=PER_GWF2_42_17 genus=PER_GWF2_42_17 taxon_order=PER_GWF2_42_17 taxon_class=PER_GWF2_42_17 phylum=PER tax=PER_GWF2_43_18 organism_group=PER (Peregrinibacteria)
type IV pilus retraction protein PilT rbh
Tax=CG_PER_02
ar4r2_scaffold_520_8
unknown

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8396..9001
DNA (606bp) protein (202aa)

This feature has no annotations

ar4r2_scaffold_520_9
CG_GN02-02, Gracilibacteria, Bacteria

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comp(9002..10369)
DNA (1368bp) protein (456aa)
protease (EC:3.4.-.-) rbh
Uncharacterized protein n=1 Tax=uncultured bacterium (gcode 4) RepID=K2BAY8_9BACT rbh
Tax=CG_GN02-02
ar4r2_scaffold_520_10

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comp(10433..12055)
DNA (1623bp) protein (541aa)
Uncharacterized protein n=1 Tax=uncultured bacterium (gcode 4) RepID=K2FVB2_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:EKE26908.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
ar4r2_scaffold_520_11
unknown

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comp(12066..12596)
DNA (531bp) protein (177aa)
coiled-coil 131..152 id=69389 bin=ACD49 species=ACD49 genus=ACD49 taxon_order=ACD49 taxon_class=ACD49 phylum=BD1-5 tax=ACD49 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5
ar4r2_scaffold_520_12

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12764..12943
DNA (180bp) protein (60aa)
transmembrane_regions 26..48 id=68895 bin=ACD49 species=ACD49 genus=ACD49 taxon_order=ACD49 taxon_class=ACD49 phylum=BD1-5 tax=ACD49 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
ar4r2_scaffold_520_13
ACD78, Gracilibacteria, Bacteria

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12970..13500
DNA (531bp) protein (177aa)
NusG antitermination factor; K02601 transcriptional antiterminator NusG id=124787 bin=ACD78 species=ACD78 genus=ACD78 taxon_order=ACD78 taxon_class=ACD78 phylum=BD1-5 tax=ACD78 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5
NusG antitermination factor
Tax=ACD78
ar4r2_scaffold_520_14
unknown

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13508..14293
DNA (786bp) protein (262aa)

This feature has no annotations

ar4r2_scaffold_520_15
ACD78, Gracilibacteria, Bacteria

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14323..14814
DNA (492bp) protein (164aa)
Transcription elongation factor GreA n=1 Tax=uncultured bacterium (gcode 4) RepID=K1XGU6_9BACT
GreA/GreB family elongation factor
Tax=ACD78
ar4r2_scaffold_520_16

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14826..15242
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=uncultured bacterium (gcode 4) RepID=K1XX43_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD29516.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
acid phosphatase/vanadium-dependent haloperoxidase-like protein
ar4r2_scaffold_520_17
unknown

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comp(15239..15706)
DNA (468bp) protein (156aa)

This feature has no annotations

ar4r2_scaffold_520_18
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15915..17612)
DNA (1698bp) protein (566aa)
leuA1; 2-isopropylmalate synthase LeuA (EC:2.3.3.13) rbh
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_00572}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
2-isopropylmalate synthase LeuA n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MQ62_CLOSA rbh
Input to Leucine pathway Jill Banfield (11/8/16)
ar4r2_scaffold_520_19
unknown

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comp(17853..18203)
DNA (351bp) protein (117aa)

This feature has no annotations

ar4r2_scaffold_520_20
unknown

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comp(18207..18674)
DNA (468bp) protein (156aa)

This feature has no annotations

ar4r2_scaffold_520_21
CG_OP9-01, Atribacteria, Bacteria

Not on your lists

comp(18900..19805)
DNA (906bp) protein (302aa)
Cysteine synthase A n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GN79_9FUSO
cysM; cysteine synthase B
Tax=CG_OP9-01
Incorporates S making L-cysteine Jill Banfield (11/8/16)
ar4r2_scaffold_520_22
RIFOXYD2_FULL_PER_ii_58_15_curated, PER-ii, Bacteria

Not on your lists

comp(19808..20869)
DNA (1062bp) protein (354aa)
Glutamate 5-kinase n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C8B6_SPHS2
glutamate 5-kinase
Tax=RIFOXYD2_FULL_PER_ii_58_15_curated
Arg and Pro pathway Jill Banfield (11/8/16)
ar4r2_scaffold_520_23
CG_GN02-01, Gracilibacteria, Bacteria

Not on your lists

comp(21075..24266)
DNA (3192bp) protein (1064aa)
chy:CHY_2365 lysS; lysyl-tRNA synthetase (EC:6.1.1.6); K04567 lysyl-tRNA synthetase, class II [EC:6.1.1.6] id=982798 bin=RAAC1_SR1 species=RAAC1_SR1 genus=RAAC1_SR1 taxon_order=RAAC1_SR1 taxon_class=RAAC1_SR1 phylum=SR1 tax=RAAC1_SR1 organism_group=SR1
hypothetical protein
Tax=CG_GN02-01
ar4r2_scaffold_520_24
unknown

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comp(24466..24684)
DNA (219bp) protein (73aa)

This feature has no annotations

ar4r2_scaffold_520_25
unknown

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comp(24828..25286)
DNA (459bp) protein (153aa)

This feature has no annotations

ar4r2_scaffold_520_26
Denitrovibrio acetiphilus, Denitrovibrio, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

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comp(25304..25981)
DNA (678bp) protein (226aa)
Peptidase M23 n=1 Tax=Denitrovibrio acetiphilus (strain DSM 12809 / N2460) RepID=D4H1J5_DENA2
peptidase M23
Peptidase M23 {ECO:0000313|EMBL:ADD68755.1}; TaxID=522772 species="Bacteria; Deferribacteres; Deferribacterales; Deferribacteraceae; Denitrovibrio.;" source="Denitrovibrio acetiphilus (strain DSM 12809 / N2460).;"
ar4r2_scaffold_520_27
unknown

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comp(26090..26182)
DNA (93bp) protein (31aa)

This feature has no annotations

ar4r2_scaffold_520_28

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comp(26292..31022)
DNA (4731bp) protein (1577aa)
signal transduction protein id=49966 bin=ACD3 species=ACD3 genus=ACD3 taxon_order=ACD3 taxon_class=ACD3 phylum=BD1-5 tax=ACD3 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5 rbh
Signal transduction protein {ECO:0000313|EMBL:EKE27828.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
ar4r2_scaffold_520_29

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comp(31119..32804)
DNA (1686bp) protein (562aa)
Uncharacterized protein n=1 Tax=uncultured bacterium (gcode 4) RepID=K2G0W7_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:EKE27827.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
hypothetical protein
Displaying 29 items

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