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AMDSBA1_11

Alias: AMDSBA1_C10

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Displaying items 1-30 of 87 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA1_11_1
Bacillus coagulans, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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159..1607
DNA (1449bp) protein (483aa)
amino acid permease family protein
Uncharacterized protein n=1 Tax=Brachypodium distachyon RepID=I1HD70_BRADI (db=UNIREF evalue=1.6e-16 bit_score=93.2 identity=21.9 coverage=89.02691511387164)
transmembrane_regions (db=TMHMM db_id=tmhmm from=440 to=459)
seg (db=Seg db_id=seg from=60 to=75)
AMDSBA1_11_2
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1624..2895)
DNA (1272bp) protein (424aa)
diguanylate phosphodiesterase
Putative uncharacterized protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NU05_9RHOB (db=UNIREF evalue=9.2e-16 bit_score=90.5 identity=28.6 coverage=51.41509433962265)
(db=HMMPfam db_id=PF00563 from=11 to=232 evalue=3.1e-52 interpro_id=IPR001633 interpro_description=Diguanylate phosphodiesterase, EAL domain)
EAL domain-like (db=superfamily db_id=SSF141868 from=6 to=244 evalue=1.8e-49 interpro_id=IPR001633 interpro_description=Diguanylate phosphodiesterase, EAL domain)
AMDSBA1_11_3
unknown

Not on your lists

comp(3153..3908)
DNA (756bp) protein (252aa)
seg (db=Seg db_id=seg from=104 to=122)
seg (db=Seg db_id=seg from=55 to=73)
transmembrane_regions (db=TMHMM db_id=tmhmm from=218 to=240)
transmembrane_regions (db=TMHMM db_id=tmhmm from=186 to=208)
AMDSBA1_11_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4157..5245
DNA (1089bp) protein (363aa)
peptidase M24
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KDT0_9FIRM (db=UNIREF evalue=1.3e-42 bit_score=179.5 identity=40.5 coverage=63.36088154269972)
seg (db=Seg db_id=seg from=337 to=349)
PROTEASE FAMILY M24 (METHIONYL AMINOPEPTIDASE, AMINOPEPTIDASE P) (db=HMMPanther db_id=PTHR10804 from=181 to=356 evalue=7.0e-52)
AMDSBA1_11_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5331..5828
DNA (498bp) protein (166aa)
peroxiredoxin (EC:1.11.1.15)
Putative peroxiredoxin YgaF n=9 Tax=Bacillus RepID=BCP_BACSU (db=UNIREF evalue=2.6e-35 bit_score=154.1 identity=48.0 coverage=90.36144578313254)
BACTERIOFERRITIN COMIGRATORY PROTEIN (db=HMMPanther db_id=PTHR10681:SF5 from=9 to=162 evalue=1.1e-58)
PEROXIREDOXIN (db=HMMPanther db_id=PTHR10681 from=9 to=162 evalue=1.1e-58)
AMDSBA1_11_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5836..6486
DNA (651bp) protein (217aa)
endonuclease III (EC:4.2.99.18 3.2.2.-)
Endonuclease III n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HS13_9FIRM (db=UNIREF evalue=2.5e-57 bit_score=227.6 identity=52.8 coverage=91.24423963133641)
ENDONUCLEASE_III_1 (db=PatternScan db_id=PS00764 from=186 to=202 evalue=0.0 interpro_id=IPR004035 interpro_description=Endonuclease III, iron-sulphur binding site GO=Molecular Function: endonuclease activity (GO:0004519), Biological Process: DNA repair (GO:0006281))
nth: endonuclease III (db=HMMTigr db_id=TIGR01083 from=2 to=193 evalue=2.4e-112 interpro_id=IPR005759 interpro_description=Endonuclease III/Nth GO=Molecular Function: DNA-(apurinic or apyrimidinic site) lyase activity (GO:0003906), Cellular Component: intracellular (GO:0005622), Biological Process: base-excision repair (GO:0006284))
AMDSBA1_11_7
unknown

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6486..6827
DNA (342bp) protein (114aa)
6486..6827 + ( gc_cont=0.500)
AMDSBA1_11_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6895..7761
DNA (867bp) protein (289aa)
Putative uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AA63_GEMAT (db=UNIREF evalue=2.2e-21 bit_score=108.6 identity=30.3 coverage=88.92733564013841)
seg (db=Seg db_id=seg from=3 to=19)
seg (db=Seg db_id=seg from=32 to=44)
seg (db=Seg db_id=seg from=76 to=84)
AMDSBA1_11_9
Alicyclobacillus acidoterrestris, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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7727..8815
DNA (1089bp) protein (363aa)
diguanylate cyclase
Diguanylate cyclase/phosphodiesterase n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3IYA0_9GAMM (db=UNIREF evalue=1.7e-15 bit_score=89.4 identity=28.5 coverage=46.5564738292011)
seg (db=Seg db_id=seg from=167 to=180)
GGDEF: diguanylate cyclase (GGDEF) domain (db=HMMTigr db_id=TIGR00254 from=201 to=359 evalue=1.3e-29 interpro_id=IPR000160 interpro_description=Diguanylate cyclase, predicted)
AMDSBA1_11_10
Acidimicrobium ferrooxidans, Acidimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

8812..9588
DNA (777bp) protein (259aa)
hypothetical protein
Hypothetical conserved protein n=1 Tax=uncultured gamma proteobacterium RepID=H5SAN6_9GAMM (db=UNIREF evalue=2.4e-35 bit_score=154.8 identity=35.0 coverage=95.75289575289575)
Uncharacterized protein {ECO:0000313|EMBL:ACU54672.1}; TaxID=525909 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Acidimicrobium.;" source="Acidimicrobium fer
Putative uncharacterized protein n=1 Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=C7M124_ACIFD
AMDSBA1_11_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10088..11434
DNA (1347bp) protein (449aa)
natural resistance-associated macrophage protein
natural resistance-associated macrophage protein
Natural resistance-associated macrophage protein n=3 Tax=Alicyclobacillus acidocaldarius RepID=C8WR30_ALIAD (db=UNIREF evalue=2.1e-180 bit_score=637.5 identity=71.1 coverage=95.99109131403118)
seg (db=Seg db_id=seg from=40 to=52)
AMDSBA1_11_12
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11482..11658
DNA (177bp) protein (59aa)
seg (db=Seg db_id=seg from=38 to=51)
transmembrane_regions (db=TMHMM db_id=tmhmm from=35 to=57)
Uncharacterized protein {ECO:0000313|EMBL:ACH82417.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acid
AMDSBA1_11_13
Mycobacterium indicus pranii, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12366..13589
DNA (1224bp) protein (408aa)
manganese transport protein mntH belonging to Nramp family
Metal ion transporter, nramp family n=1 Tax=Rickettsiella grylli RepID=A8PNI7_9COXI (db=UNIREF evalue=2.3e-80 bit_score=305.1 identity=42.3 coverage=97.05882352941177)
transmembrane_regions (db=TMHMM db_id=tmhmm from=287 to=309)
transmembrane_regions (db=TMHMM db_id=tmhmm from=324 to=346)
AMDSBA1_11_14
unknown

Not on your lists

14108..14311
DNA (204bp) protein (68aa)
14108..14311 + ( gc_cont=0.554)
AMDSBA1_11_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14934..16013
DNA (1080bp) protein (360aa)
glycoside hydrolase family protein
Predicted glycosyl hydrolase n=3 Tax=Eubacterium rectale RepID=D4JMX0_9FIRM (db=UNIREF evalue=1.5e-11 bit_score=76.3 identity=24.4 coverage=83.61111111111111)
seg (db=Seg db_id=seg from=74 to=91)
seg (db=Seg db_id=seg from=28 to=44)
AMDSBA1_11_16
unknown

Not on your lists

16435..16554
DNA (120bp) protein (40aa)
16435..16554 + ( gc_cont=0.533)
AMDSBA1_11_17
unknown

Not on your lists

16860..17207
DNA (348bp) protein (116aa)
16860..17207 + ( gc_cont=0.489)
AMDSBA1_11_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17634..18197
DNA (564bp) protein (188aa)
TQO small subunit DoxD
Aa3-type cytochrome, terminal oxidase n=1 Tax=Acidianus ambivalens RepID=Q8NKT7_ACIAM (db=UNIREF evalue=8.4e-30 bit_score=136.0 identity=39.7 coverage=90.95744680851064)
transmembrane_regions (db=TMHMM db_id=tmhmm from=24 to=46)
transmembrane_regions (db=TMHMM db_id=tmhmm from=147 to=169)
AMDSBA1_11_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18276..18821
DNA (546bp) protein (182aa)
TQO small subunit DoxA domain-containing protein
TQO small subunit DoxA domain-containing protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TZA0_9FIRM (db=UNIREF evalue=7.6e-44 bit_score=182.6 identity=51.5 coverage=91.20879120879121)
(db=HMMPfam db_id=PF07680 from=43 to=174 evalue=5.0e-19 interpro_id=IPR011636 interpro_description=TQO small subunit DoxA)
Uncharacterized protein {ECO:0000313|EMBL:AEJ40338.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfo
AMDSBA1_11_20
Lysinibacillus sp. 13S34_air, Lysinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(18900..19373)
DNA (474bp) protein (158aa)
transposase, IS607 family
ISSoc6, orfB transposase n=1 Tax=Synechococcus sp. JA-3-3Ab RepID=Q2JX41_SYNJA (db=UNIREF evalue=1.7e-15 bit_score=88.2 identity=34.0 coverage=87.34177215189874)
Putative transposase {ECO:0000313|EMBL:CEA05417.1}; TaxID=1461583 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Lysinibacillus.;" source="Lysinibacillus sp. 13S34_air.;"
Transposase n=1 Tax=Lyngbya sp. (strain PCC 8106) RepID=A0YRY6_LYNSP
AMDSBA1_11_21
unknown

Not on your lists

19898..20326
DNA (429bp) protein (143aa)
19898..20326 + ( gc_cont=0.538)
AMDSBA1_11_22
unknown

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20627..20992
DNA (366bp) protein (122aa)
20627..20992 + ( gc_cont=0.527)
AMDSBA1_11_23
unknown

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comp(21149..21718)
DNA (570bp) protein (190aa)
21149..21718 - ( gc_cont=0.584)
AMDSBA1_11_24
unknown

Not on your lists

22166..22579
DNA (414bp) protein (138aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=106 to=128)
transmembrane_regions (db=TMHMM db_id=tmhmm from=74 to=96)
transmembrane_regions (db=TMHMM db_id=tmhmm from=45 to=67)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
AMDSBA1_11_25
unknown

Not on your lists

comp(22474..22929)
DNA (456bp) protein (152aa)
seg (db=Seg db_id=seg from=75 to=87)
AMDSBA1_11_26
unknown

Not on your lists

23027..23194
DNA (168bp) protein (56aa)
23027..23194 + ( gc_cont=0.440)
AMDSBA1_11_27
unknown

Not on your lists

23217..23861
DNA (645bp) protein (215aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
Triger factor/SurA peptide-binding domain-like (db=superfamily db_id=SSF109998 from=49 to=161 evalue=2.5e-07 interpro_id=IPR008880 interpro_description=Trigger factor, C-terminal, bacterial GO=Biological Process: protein folding (GO:0006457), Biological Process: protein transport (GO:0015031))
AMDSBA1_11_28
unknown

Not on your lists

24383..24778
DNA (396bp) protein (132aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
transmembrane_regions (db=TMHMM db_id=tmhmm from=42 to=61)
transmembrane_regions (db=TMHMM db_id=tmhmm from=74 to=96)
transmembrane_regions (db=TMHMM db_id=tmhmm from=101 to=123)
AMDSBA1_11_29
unknown

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comp(25288..25989)
DNA (702bp) protein (234aa)
25288..25989 - ( gc_cont=0.504)
AMDSBA1_11_30
unknown

Not on your lists

comp(28114..28569)
DNA (456bp) protein (152aa)
28114..28569 - ( gc_cont=0.579)
Displaying items 1-30 of 87 in total

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