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This organism can only be binned in the context of its binning project CG_SAG_2014_w16S. Please contact the project owner (jbanfield@berkeley.edu) to become a member and gain access.

AMDSBA1_18

Alias: AMDSBA1_C17

Search features with annotation key words

Displaying items 1-30 of 84 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA1_18_1
unknown

Not on your lists

comp(16..567)
DNA (552bp) protein (184aa)
(db=HMMPfam db_id=PF08812 from=52 to=158 evalue=3.2e-08 interpro_id=IPR014199 interpro_description=Sporulation protein YtxC)
AMDSBA1_18_2
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

764..1513
DNA (750bp) protein (250aa)
type 11 methyltransferase
Methyltransferase type 11 n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=E4M5N2_9FIRM (db=UNIREF evalue=2.1e-36 bit_score=158.3 identity=36.1 coverage=95.6)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=11 to=249 evalue=8.0e-45)
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=33 to=211 evalue=5.0e-43)
AMDSBA1_18_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1859..2719)
DNA (861bp) protein (287aa)
3-hydroxybutyryl-CoA dehydrogenase (EC:1.1.1.157)
3-hydroxybutyryl-CoA dehydrogenase n=2 Tax=Sulfobacillus acidophilus RepID=G8TWG5_9FIRM (db=UNIREF evalue=5.3e-92 bit_score=343.2 identity=62.4 coverage=96.51567944250871)
seg (db=Seg db_id=seg from=84 to=96)
AMDSBA1_18_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2750..3499)
DNA (750bp) protein (250aa)
enoyl-ACP reductase (EC:1.3.1.9)
Hydroxybutyrate dehydrogenase n=1 Tax=Danaus plexippus RepID=G6D6V2_DANPL (db=UNIREF evalue=2.6e-10 bit_score=71.6 identity=25.1 coverage=96.39999999999999)
SHORT-CHAIN DEHYDROGENASES/REDUCTASE FAMILY MEMBER (db=HMMPanther db_id=PTHR19410 from=1 to=243 evalue=1.4e-87)
ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE (db=HMMPanther db_id=PTHR19410:SF12 from=1 to=243 evalue=1.4e-87)
AMDSBA1_18_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3621..4601)
DNA (981bp) protein (327aa)
glyoxylate reductase
Phosphoglycerate dehydrogenase-like oxidoreductase n=1 Tax=gamma proteobacterium HIMB55 RepID=H3NUU0_9GAMM (db=UNIREF evalue=1.9e-29 bit_score=135.6 identity=34.5 coverage=81.9571865443425)
seg (db=Seg db_id=seg from=248 to=259)
D_2_HYDROXYACID_DH_3 (db=PatternScan db_id=PS00671 from=225 to=241 evalue=0.0 interpro_id=IPR006140 interpro_description=D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding GO=Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616), Molecular Function: cofactor binding (GO:0048037), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA1_18_6
unknown

Not on your lists

comp(4764..4955)
DNA (192bp) protein (64aa)
4764..4955 - ( gc_cont=0.500)
AMDSBA1_18_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6226..7251)
DNA (1026bp) protein (342aa)
hypothetical protein
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TWE5_9FIRM (db=UNIREF evalue=3.7e-84 bit_score=317.4 identity=41.5 coverage=98.53801169590643)
AMDSBA1_18_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7324..8301)
DNA (978bp) protein (326aa)
electron transfer flavoprotein alpha subunit apoprotein
electron transfer flavoprotein alpha subunit apoprotein
Electron transfer flavoprotein alpha subunit apoprotein n=2 Tax=Sulfobacillus acidophilus RepID=G8TWE4_9FIRM (db=UNIREF evalue=4.0e-112 bit_score=410.2 identity=64.3 coverage=98.46625766871165)
AMDSBA1_18_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8318..9085)
DNA (768bp) protein (256aa)
fixA; electron transfer flavoprotein subunit beta
Electron transfer flavoprotein alpha/beta-subunit n=1 Tax=Paenibacillus curdlanolyticus YK9 RepID=E0IB43_9BACL (db=UNIREF evalue=1.3e-49 bit_score=202.2 identity=43.9 coverage=99.21875)
Electron transfer flavoprotein, beta subunit (db=HMMPIR db_id=PIRSF000090 from=1 to=254 evalue=4.9e-100 interpro_id=IPR012255 interpro_description=Electron transfer flavoprotein, beta subunit GO=Molecular Function: electron carrier activity (GO:0009055))
Adenine nucleotide alpha hydrolases-like (db=superfamily db_id=SSF52402 from=1 to=244 evalue=5.6e-89)
AMDSBA1_18_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9123..10523)
DNA (1401bp) protein (467aa)
L-seryl-tRNA(Sec) selenium transferase (EC:2.9.1.1)
L-seryl-tRNA(Sec) selenium transferase (EC:2.9.1.1)
L-seryl-tRNA(Sec) selenium transferase n=2 Tax=Sulfobacillus acidophilus RepID=G8TWE2_9FIRM (db=UNIREF evalue=3.2e-147 bit_score=527.3 identity=59.1 coverage=96.1456102783726)
AMDSBA1_18_11
unknown

Not on your lists

comp(10605..10805)
DNA (201bp) protein (67aa)
10605..10805 - ( gc_cont=0.517)
AMDSBA1_18_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10892..11866)
DNA (975bp) protein (325aa)
porphobilinogen synthase (EC:4.2.1.24)
Delta-aminolevulinic acid dehydratase n=1 Tax=Archaeoglobus fulgidus DSM 4304 RepID=HEM2_ARCFU (db=UNIREF evalue=8.1e-89 bit_score=332.8 identity=51.4 coverage=96.61538461538461)
D_ALA_DEHYDRATASE (db=PatternScan db_id=PS00169 from=240 to=252 evalue=0.0 interpro_id=IPR001731 interpro_description=Porphobilinogen synthase GO=Molecular Function: porphobilinogen synthase activity (GO:0004655), Biological Process: tetrapyrrole biosynthetic process (GO:0033014), Molecular Function: metal ion binding (GO:0046872))
AMDSBA1_18_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11874..13208)
DNA (1335bp) protein (445aa)
cobA-hemD; bifunctional uroporphyrinogen III C2,C7-methyltransferase/uroporphyrinogen III synthase
Putative uncharacterized protein n=2 Tax=unclassified Lachnospiraceae RepID=E9RV01_9FIRM (db=UNIREF evalue=2.9e-20 bit_score=105.5 identity=29.3 coverage=59.10112359550562)
seg (db=Seg db_id=seg from=263 to=276)
HemD-like (db=superfamily db_id=SSF69618 from=194 to=444 evalue=1.7e-49 interpro_id=IPR003754 interpro_description=Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO=Molecular Function: uroporphyrinogen-III synthase activity (GO:0004852), Biological Process: tetrapyrrole biosynthetic process (GO:0033014))
AMDSBA1_18_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13221..14162)
DNA (942bp) protein (314aa)
hydroxymethylbilane synthase (EC:2.5.1.61)
Porphobilinogen deaminase n=2 Tax=Methanotorris RepID=H1KWN0_9EURY (db=UNIREF evalue=6.1e-41 bit_score=173.7 identity=37.1 coverage=90.76433121019109)
Porphobilinogen deaminase (db=HMMPIR db_id=PIRSF001438 from=15 to=313 evalue=1.2e-123 interpro_id=IPR000860 interpro_description=Tetrapyrrole biosynthesis, hydroxymethylbilane synthase GO=Molecular Function: hydroxymethylbilane synthase activity (GO:0004418), Biological Process: tetrapyrrole biosynthetic process (GO:0033014))
hemC: porphobilinogen deaminase (db=HMMTigr db_id=TIGR00212 from=17 to=308 evalue=3.9e-108 interpro_id=IPR000860 interpro_description=Tetrapyrrole biosynthesis, hydroxymethylbilane synthase GO=Molecular Function: hydroxymethylbilane synthase activity (GO:0004418), Biological Process: tetrapyrrole biosynthetic process (GO:0033014))
AMDSBA1_18_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14159..14965)
DNA (807bp) protein (269aa)
cytochrome c assembly protein
Cytochrome c assembly protein n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RGF0_MOOTA (db=UNIREF evalue=4.6e-29 bit_score=134.0 identity=29.6 coverage=94.05204460966543)
transmembrane_regions (db=TMHMM db_id=tmhmm from=239 to=261)
transmembrane_regions (db=TMHMM db_id=tmhmm from=213 to=232)
AMDSBA1_18_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14980..16290)
DNA (1311bp) protein (437aa)
glutamyl-tRNA reductase (EC:1.2.1.70)
Glutamyl-tRNA reductase n=11 Tax=Bacillus RepID=HEM1_BACA2 (db=UNIREF evalue=7.1e-80 bit_score=303.5 identity=38.4 coverage=96.33867276887872)
seg (db=Seg db_id=seg from=298 to=307)
AMDSBA1_18_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17213..18091)
DNA (879bp) protein (293aa)
sucD; succinyl-CoA synthetase subunit alpha
sucD; succinyl-CoA synthetase subunit alpha
Malate--CoA ligase subunit alpha n=8 Tax=Alphaproteobacteria RepID=MTKB_METEA (db=UNIREF evalue=1.2e-67 bit_score=262.3 identity=45.8 coverage=99.31740614334471)
seg (db=Seg db_id=seg from=209 to=221)
AMDSBA1_18_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18091..19203)
DNA (1113bp) protein (371aa)
sucC; succinyl-CoA synthetase subunit beta
Succinyl-CoA ligase [ADP-forming] subunit beta n=18 Tax=Mycobacterium RepID=SUCC_MYCA1 (db=UNIREF evalue=4.8e-61 bit_score=240.7 identity=38.4 coverage=98.92183288409704)
seg (db=Seg db_id=seg from=241 to=257)
SUCCINYL_COA_LIG_3 (db=PatternScan db_id=PS01217 from=241 to=266 evalue=0.0 interpro_id=IPR017866 interpro_description=Succinyl-CoA synthetase, beta subunit, conserved site)
AMDSBA1_18_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20159..21088)
DNA (930bp) protein (310aa)
mdh; malate dehydrogenase
mdh; malate dehydrogenase
Malate dehydrogenase n=3 Tax=Bacteria RepID=C4W9S7_STAWA (db=UNIREF evalue=1.2e-81 bit_score=308.9 identity=50.5 coverage=99.35483870967742)
AMDSBA1_18_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21120..22334)
DNA (1215bp) protein (405aa)
icd; isocitrate dehydrogenase
Isocitrate dehydrogenase [NADP] n=6 Tax=Cyanobacteria RepID=IDH_NOSS1 (db=UNIREF evalue=1.6e-78 bit_score=298.9 identity=53.5 coverage=66.41975308641975)
seg (db=Seg db_id=seg from=13 to=24)
IDH_IMDH (db=PatternScan db_id=PS00470 from=291 to=310 evalue=0.0 interpro_id=IPR019818 interpro_description=Isocitrate/isopropylmalate dehydrogenase, conserved site GO=Molecular Function: magnesium ion binding (GO:0000287), Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616), Molecular Function: NAD binding (GO:0051287), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA1_18_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22935..24734)
DNA (1800bp) protein (600aa)
small GTP-binding protein
small GTP-binding protein
Small GTP-binding protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TVY3_9FIRM (db=UNIREF evalue=3.0e-190 bit_score=670.6 identity=57.3 coverage=99.33333333333333)
transmembrane_regions (db=TMHMM db_id=tmhmm from=391 to=413)
AMDSBA1_18_22
RIFOXYA1_FULL_Alicyclobacillus_53_8_curated, Firmicutes, Bacteria

Not on your lists

25024..26262
DNA (1239bp) protein (413aa)
Permeases of the major facilitator superfamily protein n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B8D2_9BACI (db=UNIREF evalue=9.7e-63 bit_score=246.5 identity=36.1 coverage=96.61016949152543)
transmembrane_regions (db=TMHMM db_id=tmhmm from=382 to=404)
transmembrane_regions (db=TMHMM db_id=tmhmm from=347 to=369)
transmembrane_regions (db=TMHMM db_id=tmhmm from=321 to=340)
AMDSBA1_18_23
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26333..28345)
DNA (2013bp) protein (671aa)
4fe-4S ferredoxin, iron-sulfur binding domain-containing protein
4fe-4S ferredoxin, iron-sulfur binding domain-containing protein
Iron-sulfur binding reductase n=1 Tax=Archaeoglobus fulgidus DSM 4304 RepID=O28501_ARCFU (db=UNIREF evalue=8.1e-59 bit_score=234.2 identity=37.3 coverage=48.58420268256334)
seg (db=Seg db_id=seg from=142 to=157)
AMDSBA1_18_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28415..28642)
DNA (228bp) protein (76aa)
(db=HMMPfam db_id=PF04023 from=1 to=71 evalue=2.2e-11 interpro_id=IPR007167 interpro_description=Ferrous iron transporter, FeoA subunit GO=Molecular Function: iron ion binding (GO:0005506))
no description (db=HMMSmart db_id=SM00899 from=1 to=71 evalue=3.3e-11 interpro_id=IPR007167 interpro_description=Ferrous iron transporter, FeoA subunit GO=Molecular Function: iron ion binding (GO:0005506))
C-terminal domain of transcriptional repressors (db=superfamily db_id=SSF50037 from=27 to=71 evalue=2.8e-07 interpro_id=IPR008988 interpro_description=Transcriptional repressor, C-terminal)
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8IBN8_SULAT
AMDSBA1_18_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28658..29410)
DNA (753bp) protein (251aa)
Sec-independent protein translocase TatC
Sec-independent protein translocase protein TatC 3 n=1 Tax=Sporosarcina newyorkensis 2681 RepID=F9DTP2_9BACL (db=UNIREF evalue=8.0e-36 bit_score=156.4 identity=32.6 coverage=92.03187250996015)
transmembrane_regions (db=TMHMM db_id=tmhmm from=191 to=213)
transmembrane_regions (db=TMHMM db_id=tmhmm from=156 to=178)
AMDSBA1_18_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29435..30088)
DNA (654bp) protein (218aa)
Response regulator, NarL-family n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JV68_9GAMM (db=UNIREF evalue=1.4e-20 bit_score=105.5 identity=30.8 coverage=95.41284403669725)
HTH_LUXR_1 (db=PatternScan db_id=PS00622 from=166 to=193 evalue=0.0 interpro_id=IPR000792 interpro_description=Transcription regulator LuxR, C-terminal GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sequence-specific DNA binding (GO:0043565))
CheY-like (db=superfamily db_id=SSF52172 from=2 to=186 evalue=9.3e-35 interpro_id=IPR011006 interpro_description=CheY-like superfamily)
no description (db=HMMSmart db_id=SM00448 from=5 to=118 evalue=8.8e-32 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
AMDSBA1_18_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30054..30965)
DNA (912bp) protein (304aa)
integral membrane sensor signal transduction histidine kinase
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Paenibacillus dendritiformis C454 RepID=H3SB28_9BACL (db=UNIREF evalue=2.0e-25 bit_score=122.1 identity=28.4 coverage=87.82894736842105)
coiled-coil (db=Coil db_id=coil from=121 to=142 evalue=NA)
coiled-coil (db=Coil db_id=coil from=67 to=88 evalue=NA)
AMDSBA1_18_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31092..31865)
DNA (774bp) protein (258aa)
alpha/beta-Hydrolases (db=superfamily db_id=SSF53474 from=7 to=248 evalue=2.5e-37)
no description (db=Gene3D db_id=G3DSA:3.40.50.1820 from=7 to=249 evalue=1.6e-34)
ALPHA/BETA HYDROLASE RELATED (db=HMMPanther db_id=PTHR10992 from=7 to=242 evalue=7.8e-31)
VALACYCLOVIR HYDROLASE (db=HMMPanther db_id=PTHR10992:SF17 from=7 to=242 evalue=7.8e-31)
AMDSBA1_18_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31890..32579)
DNA (690bp) protein (230aa)
molybdenum cofactor cytidylyltransferase
Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z424_9GAMM (db=UNIREF evalue=5.5e-07 bit_score=60.5 identity=27.7 coverage=81.30434782608695)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=28 to=228 evalue=5.1e-19)
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=30 to=220 evalue=1.6e-16)
AMDSBA1_18_30
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32612..33058)
DNA (447bp) protein (149aa)
carbon monoxide dehydrogenase subunit G
Carbon-monoxide dehydrogenase subunit G n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SQ20_9BACT (db=UNIREF evalue=7.7e-18 bit_score=95.9 identity=31.2 coverage=93.28859060402685)
(db=HMMPfam db_id=PF06240 from=9 to=143 evalue=6.5e-22 interpro_id=IPR010419 interpro_description=Carbon monoxide dehydrogenase subunit G)
Bet v1-like (db=superfamily db_id=SSF55961 from=1 to=147 evalue=6.2e-11)
Displaying items 1-30 of 84 in total

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