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AMDSBA1_40

Alias: AMDSBA1_C39

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Displaying items 1-30 of 43 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA1_40_1
Otolemur garnettii, Otolemur, Primates, Mammalia, Chordata, Metazoa

Not on your lists

comp(1..336)
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Otolemur garnettii RepID=H0X5P1_OTOGA (db=UNIREF evalue=3.2e-08 bit_score=63.5 identity=39.5 coverage=71.42857142857143)
seg (db=Seg db_id=seg from=74 to=112)
seg (db=Seg db_id=seg from=41 to=60)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
AMDSBA1_40_2
unknown

Not on your lists

comp(455..1075)
DNA (621bp) protein (207aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=148 to=161)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=24 evalue=7.0)
AMDSBA1_40_3
unknown

Not on your lists

comp(1126..1593)
DNA (468bp) protein (156aa)
1126..1593 - ( gc_cont=0.551)
AMDSBA1_40_4
unknown

Not on your lists

1676..2146
DNA (471bp) protein (157aa)
1676..2146 + ( gc_cont=0.431)
AMDSBA1_40_5
unknown

Not on your lists

comp(2278..2400)
DNA (123bp) protein (41aa)
2278..2400 - ( gc_cont=0.537)
AMDSBA1_40_6
unknown

Not on your lists

comp(2445..3077)
DNA (633bp) protein (211aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=21 evalue=7.0)
AMDSBA1_40_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3074..4471)
DNA (1398bp) protein (466aa)
chromosome partitioning ATPase rbh
chromosome partitioning ATPase rbh
Putative MinD-like protein n=2 Tax=Sulfobacillus thermotolerans RepID=G5CIY8_9FIRM (db=UNIREF evalue=9.7e-43 bit_score=180.3 identity=32.1 coverage=83.47639484978541)
seg (db=Seg db_id=seg from=365 to=376)
AMDSBA1_40_8
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4487..6466)
DNA (1980bp) protein (660aa)
sensory box protein
Diguanylate cyclase domain protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WT68_9SPHN (db=UNIREF evalue=5.6e-12 bit_score=78.6 identity=32.9 coverage=23.78787878787879)
GGDEF: diguanylate cyclase (GGDEF) domain (db=HMMTigr db_id=TIGR00254 from=128 to=295 evalue=1.3e-29 interpro_id=IPR000160 interpro_description=Diguanylate cyclase, predicted)
EAL domain-like (db=superfamily db_id=SSF141868 from=303 to=550 evalue=8.8e-53 interpro_id=IPR001633 interpro_description=Diguanylate phosphodiesterase, EAL domain)
AMDSBA1_40_9
unknown

Not on your lists

comp(6560..7801)
DNA (1242bp) protein (414aa)
seg (db=Seg db_id=seg from=160 to=172)
seg (db=Seg db_id=seg from=194 to=207)
seg (db=Seg db_id=seg from=370 to=384)
AMDSBA1_40_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7909..8199)
DNA (291bp) protein (97aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8IAM1_SULAT (db=UNIREF evalue=4.8e-29 bit_score=132.5 identity=55.8 coverage=96.90721649484536)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
transmembrane_regions (db=TMHMM db_id=tmhmm from=44 to=66)
AMDSBA1_40_11
Uloborus diversus, Uloborus, Araneae, Arachnida, Arthropoda, Metazoa

Not on your lists

comp(8230..10056)
DNA (1827bp) protein (609aa)
Cross-beta structure silk protein 2 n=1 Tax=Mallada signata RepID=C0LZW7_9NEOP (db=UNIREF evalue=5.9e-08 bit_score=65.1 identity=26.5 coverage=59.277504105090316)
seg (db=Seg db_id=seg from=173 to=191)
seg (db=Seg db_id=seg from=249 to=264)
seg (db=Seg db_id=seg from=310 to=323)
AMDSBA1_40_12
unknown

Not on your lists

comp(10040..10801)
DNA (762bp) protein (254aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
transmembrane_regions (db=TMHMM db_id=tmhmm from=39 to=61)
transmembrane_regions (db=TMHMM db_id=tmhmm from=74 to=96)
transmembrane_regions (db=TMHMM db_id=tmhmm from=171 to=193)
AMDSBA1_40_13
unknown

Not on your lists

comp(10832..11224)
DNA (393bp) protein (131aa)
seg (db=Seg db_id=seg from=106 to=118)
transmembrane_regions (db=TMHMM db_id=tmhmm from=106 to=128)
transmembrane_regions (db=TMHMM db_id=tmhmm from=72 to=94)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
AMDSBA1_40_14
unknown

Not on your lists

comp(11586..11840)
DNA (255bp) protein (85aa)
11586..11840 - ( gc_cont=0.514)
AMDSBA1_40_15
unknown

Not on your lists

comp(11998..12192)
DNA (195bp) protein (65aa)
coiled-coil (db=Coil db_id=coil from=29 to=50 evalue=NA)
seg (db=Seg db_id=seg from=20 to=30)
AMDSBA1_40_16
unknown

Not on your lists

comp(12490..12933)
DNA (444bp) protein (148aa)
12490..12933 - ( gc_cont=0.529)
AMDSBA1_40_17
unknown

Not on your lists

comp(13040..13360)
DNA (321bp) protein (107aa)
BH2 (db=PatternScan db_id=PS01258 from=81 to=92 evalue=0.0 interpro_id=IPR020726 interpro_description=Apoptosis regulator, Bcl-2, BH2 motif, conserved site GO=Biological Process: regulation of apoptotic process (GO:0042981))
AMDSBA1_40_18
unknown

Not on your lists

comp(13667..14584)
DNA (918bp) protein (306aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
seg (db=Seg db_id=seg from=9 to=21)
seg (db=Seg db_id=seg from=29 to=47)
AMDSBA1_40_19
unknown

Not on your lists

comp(14650..15300)
DNA (651bp) protein (217aa)
seg (db=Seg db_id=seg from=113 to=125)
transmembrane_regions (db=TMHMM db_id=tmhmm from=194 to=213)
transmembrane_regions (db=TMHMM db_id=tmhmm from=116 to=138)
AMDSBA1_40_20
unknown

Not on your lists

comp(15406..15645)
DNA (240bp) protein (80aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
transmembrane_regions (db=TMHMM db_id=tmhmm from=45 to=67)
seg (db=Seg db_id=seg from=17 to=37)
AMDSBA1_40_21
Sulfobacillus thermotolerans, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15718..17319)
DNA (1602bp) protein (534aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
seg (db=Seg db_id=seg from=443 to=455)
seg (db=Seg db_id=seg from=344 to=366)
seg (db=Seg db_id=seg from=11 to=44)
AMDSBA1_40_22
unknown

Not on your lists

comp(17356..17493)
DNA (138bp) protein (46aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=18)
AMDSBA1_40_23
unknown

Not on your lists

comp(17490..17777)
DNA (288bp) protein (96aa)
17490..17777 - ( gc_cont=0.580)
AMDSBA1_40_24
unknown

Not on your lists

comp(17832..18140)
DNA (309bp) protein (103aa)
seg (db=Seg db_id=seg from=80 to=100)
AMDSBA1_40_25
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18292..19743)
DNA (1452bp) protein (484aa)
DNA helicase Fdhp n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZU41_9BACT (db=UNIREF evalue=2.8e-13 bit_score=82.4 identity=42.2 coverage=19.00826446280992)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=466 evalue=6.2e-44)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=2 to=237 evalue=9.2e-19)
(db=HMMPfam db_id=PF00580 from=194 to=269 evalue=1.3e-10 interpro_id=IPR000212 interpro_description=DNA helicase, UvrD/REP type GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: ATP-dependent DNA helicase activity (GO:0004003), Molecular Function: ATP binding (GO:0005524))
AMDSBA1_40_26
unknown

Not on your lists

comp(19873..20856)
DNA (984bp) protein (328aa)
seg (db=Seg db_id=seg from=295 to=323)
AMDSBA1_40_27
Ammonifex degensii, Ammonifex, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20938..22071)
DNA (1134bp) protein (378aa)
zinc finger CHC2-family protein
DNA primase DnaG n=2 Tax=Leuconostoc mesenteroides RepID=C2KJ21_LEUMC (db=UNIREF evalue=1.5e-09 bit_score=69.7 identity=25.0 coverage=81.74603174603175)
seg (db=Seg db_id=seg from=93 to=106)
seg (db=Seg db_id=seg from=312 to=326)
AMDSBA1_40_28
unknown

Not on your lists

comp(22165..22686)
DNA (522bp) protein (174aa)
seg (db=Seg db_id=seg from=161 to=173)
AMDSBA1_40_29
unknown

Not on your lists

comp(22817..23248)
DNA (432bp) protein (144aa)
seg (db=Seg db_id=seg from=110 to=121)
AMDSBA1_40_30
Providencia stuartii, Providencia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23287..23997)
DNA (711bp) protein (237aa)
hypothetical protein
Uncharacterized protein n=3 Tax=Pseudomonas RepID=I4N3Q0_9PSED (db=UNIREF evalue=2.1e-33 bit_score=148.3 identity=38.7 coverage=91.13924050632912)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=15 to=94 evalue=1.6e-09)
no description (db=HMMSmart db_id=SM00382 from=11 to=158 evalue=5.4e-06 interpro_id=IPR003593 interpro_description=ATPase, AAA+ type, core GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: nucleoside-triphosphatase activity (GO:0017111))
Displaying items 1-30 of 43 in total

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