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AMDSBA1_43

Alias: AMDSBA1_C42

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Displaying 30 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA1_43_1
unknown

Not on your lists

28..897
DNA (870bp) protein (290aa)
seg (db=Seg db_id=seg from=28 to=50)
seg (db=Seg db_id=seg from=110 to=123)
AMDSBA1_43_2
unknown

Not on your lists

comp(945..1151)
DNA (207bp) protein (69aa)
945..1151 - ( gc_cont=0.459)
AMDSBA1_43_3
Acidithrix ferrooxidans, Acidithrix, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

2025..2762
DNA (738bp) protein (246aa)
multidrug ABC transporter ATPase
ABC transporter, ATP-binding protein n=1 Tax=Rhodobacteraceae bacterium HTCC2150 RepID=A3JST6_9RHOB (db=UNIREF evalue=4.4e-10 bit_score=70.9 identity=23.8 coverage=76.82926829268293)
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=6 to=226 evalue=1.1e-78)
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=137 to=151 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
AMDSBA1_43_4
Acidithrix ferrooxidans, Acidithrix, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

2759..4195
DNA (1437bp) protein (479aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=432 to=454)
transmembrane_regions (db=TMHMM db_id=tmhmm from=408 to=427)
transmembrane_regions (db=TMHMM db_id=tmhmm from=373 to=395)
transmembrane_regions (db=TMHMM db_id=tmhmm from=344 to=363)
AMDSBA1_43_5
Thermosinus carboxydivorans, Thermosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(4895..5317)
DNA (423bp) protein (141aa)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=7 to=121 evalue=2.8e-19)
no description (db=HMMSmart db_id=SM00345 from=20 to=79 evalue=2.1e-15 interpro_id=IPR000524 interpro_description=Transcription regulator HTH, GntR GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
(db=HMMPfam db_id=PF00392 from=16 to=79 evalue=1.4e-13 interpro_id=IPR000524 interpro_description=Transcription regulator HTH, GntR GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=9 to=79 evalue=1.6e-11 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
AMDSBA1_43_6
unknown

Not on your lists

comp(5958..6698)
DNA (741bp) protein (247aa)
Prokaryotic lipoproteins and lipoprotein localization factors (db=superfamily db_id=SSF89392 from=65 to=235 evalue=6.4e-09)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=23 evalue=6.0)
AMDSBA1_43_7
unknown

Not on your lists

comp(6960..7679)
DNA (720bp) protein (240aa)
seg (db=Seg db_id=seg from=132 to=144)
AMDSBA1_43_8
Brevibacillus panacihumi, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8165..9430)
DNA (1266bp) protein (422aa)
hypothetical protein
seg (db=Seg db_id=seg from=150 to=159)
ACETYLORNITHINE DEACETYLASE (db=HMMPanther db_id=PTHR11014:SF5 from=23 to=421 evalue=4.2e-51)
PEPTIDASE M20 FAMILY MEMBER (db=HMMPanther db_id=PTHR11014 from=23 to=421 evalue=4.2e-51)
AMDSBA1_43_9
unknown

Not on your lists

9942..10247
DNA (306bp) protein (102aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
AMDSBA1_43_10
GWF2_Melainabacteria_32_7_curated, Melainabacteria, Bacteria

Not on your lists

comp(10505..11419)
DNA (915bp) protein (305aa)
glucokinase (EC:2.7.1.2)
N-acetylmannosamine kinase n=35 Tax=Yersinia RepID=NANK_YERP3 (db=UNIREF evalue=1.1e-15 bit_score=89.7 identity=26.4 coverage=93.11475409836065)
ROK FAMILY (db=HMMPanther db_id=PTHR18964 from=68 to=297 evalue=3.9e-50)
GLUCOSE KINASE (db=HMMPanther db_id=PTHR18964:SF37 from=68 to=297 evalue=3.9e-50)
AMDSBA1_43_11
bacterium UASB270, Bacteria

Not on your lists

comp(11494..12375)
DNA (882bp) protein (294aa)
binding-protein-dependent transport system inner membrane protein
Binding-protein-dependent transport system inner membrane component n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IXK9_9BACL (db=UNIREF evalue=3.8e-29 bit_score=134.4 identity=30.0 coverage=91.83673469387756)
transmembrane_regions (db=TMHMM db_id=tmhmm from=154 to=176)
transmembrane_regions (db=TMHMM db_id=tmhmm from=91 to=113)
AMDSBA1_43_12
Burkholderia sacchari, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12372..13295)
DNA (924bp) protein (308aa)
binding-protein-dependent transport system inner membrane protein
Fe3+ ABC superfamily ATP binding cassette transporter, membrane protein n=5 Tax=Lactobacillus casei group RepID=C2FG74_LACPA (db=UNIREF evalue=9.6e-07 bit_score=60.1 identity=23.2 coverage=87.01298701298701)
seg (db=Seg db_id=seg from=118 to=130)
transmembrane_regions (db=TMHMM db_id=tmhmm from=274 to=296)
AMDSBA1_43_13
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13320..14564)
DNA (1245bp) protein (415aa)
family 1 extracellular solute-binding protein
Extracellular solute-binding protein family 1 n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TV68_9CHLR (db=UNIREF evalue=1.5e-15 bit_score=89.7 identity=25.7 coverage=84.09638554216868)
seg (db=Seg db_id=seg from=12 to=31)
Periplasmic binding protein-like II (db=superfamily db_id=SSF53850 from=18 to=414 evalue=4.3e-75)
AMDSBA1_43_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14830..15870
DNA (1041bp) protein (347aa)
sugar isomerase (SIS)
Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VQX9_9CLOT (db=UNIREF evalue=4.9e-07 bit_score=61.2 identity=28.8 coverage=60.51873198847262)
seg (db=Seg db_id=seg from=140 to=155)
SIS domain (db=superfamily db_id=SSF53697 from=4 to=332 evalue=5.3e-46)
AMDSBA1_43_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15827..16663
DNA (837bp) protein (279aa)
DeoR family transcriptional regulator
HTH_DEOR_1 (db=PatternScan db_id=PS00894 from=16 to=50 evalue=0.0 interpro_id=IPR018356 interpro_description=Transcription regulator, HTH DeoR-type, conserved site GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
(db=HMMPfam db_id=PF00455 from=87 to=241 evalue=1.0e-28 interpro_id=IPR014036 interpro_description=Transcription regulator HTH, DeoR)
NagB/RpiA/CoA transferase-like (db=superfamily db_id=SSF100950 from=83 to=246 evalue=1.0e-26)
AMDSBA1_43_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16660..17547
DNA (888bp) protein (296aa)
seg (db=Seg db_id=seg from=262 to=271)
PFKB_KINASES_1 (db=PatternScan db_id=PS00583 from=37 to=61 evalue=0.0 interpro_id=IPR002173 interpro_description=Carbohydrate/puine kinase, PfkB, conserved site GO=Molecular Function: phosphotransferase activity, alcohol group as acceptor (GO:0016773))
PFKB_KINASES_2 (db=PatternScan db_id=PS00584 from=233 to=246 evalue=0.0 interpro_id=IPR002173 interpro_description=Carbohydrate/puine kinase, PfkB, conserved site GO=Molecular Function: phosphotransferase activity, alcohol group as acceptor (GO:0016773))
Ribokinase-like (db=superfamily db_id=SSF53613 from=1 to=291 evalue=3.0e-50)
AMDSBA1_43_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17656..18486
DNA (831bp) protein (277aa)
ketose-bisphosphate aldolase
Putative uncharacterized protein n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5IK02_9CLOT (db=UNIREF evalue=1.3e-26 bit_score=125.9 identity=34.4 coverage=81.2274368231047)
Aldolase (db=superfamily db_id=SSF51569 from=2 to=276 evalue=2.8e-64)
(db=HMMPfam db_id=PF01116 from=5 to=269 evalue=4.0e-61 interpro_id=IPR000771 interpro_description=Ketose-bisphosphate aldolase, class-II GO=Biological Process: carbohydrate metabolic process (GO:0005975), Molecular Function: zinc ion binding (GO:0008270), Molecular Function: aldehyde-lyase activity (GO:0016832))
AMDSBA1_43_18
unknown

Not on your lists

comp(19148..19507)
DNA (360bp) protein (120aa)
19148..19507 - ( gc_cont=0.603)
AMDSBA1_43_19
Paenibacillus sp. VKM B-2647, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19583..20230)
DNA (648bp) protein (216aa)
YheO domain-containing protein
Putative uncharacterized protein n=1 Tax=Erwinia tasmaniensis RepID=B2VKS6_ERWT9 (db=UNIREF evalue=4.5e-19 bit_score=100.5 identity=31.1 coverage=95.37037037037037)
(db=HMMPfam db_id=PF08348 from=12 to=122 evalue=1.2e-32 interpro_id=IPR013559 interpro_description=YheO-like)
Q3RUT2_9BURK_Q3RUT2; (db=BlastProDom db_id=PD037769 from=11 to=112 evalue=4.0e-17 interpro_id=IPR013559 interpro_description=YheO-like)
AMDSBA1_43_20
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20305..20688)
DNA (384bp) protein (128aa)
endoribonuclease L-PSP
Endoribonuclease L-PSP n=2 Tax=Burkholderia RepID=B1G1M6_9BURK (db=UNIREF evalue=4.3e-09 bit_score=66.6 identity=32.5 coverage=93.75)
seg (db=Seg db_id=seg from=40 to=53)
TIGR00004: putative endoribonuclease L-PSP (db=HMMTigr db_id=TIGR00004 from=4 to=126 evalue=5.9e-48 interpro_id=IPR006056 interpro_description=YjgF-like protein)
AMDSBA1_43_21
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

comp(20701..21798)
DNA (1098bp) protein (366aa)
alanine racemase domain-containing protein
Metal-activated pyridoxal protein n=1 Tax=Burkholderia sp. YI23 RepID=G8MN93_9BURK (db=UNIREF evalue=7.6e-35 bit_score=153.7 identity=30.5 coverage=96.99453551912568)
seg (db=Seg db_id=seg from=339 to=352)
PLP-binding barrel (db=superfamily db_id=SSF51419 from=16 to=244 evalue=1.8e-40)
AMDSBA1_43_22
Achromobacter arsenitoxydans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21807..22541)
DNA (735bp) protein (245aa)
short-chain dehydrogenase
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase n=11 Tax=Enterobacteriaceae RepID=KDUD_DICD3 (db=UNIREF evalue=6.9e-24 bit_score=116.7 identity=29.1 coverage=98.77551020408163)
seg (db=Seg db_id=seg from=215 to=228)
seg (db=Seg db_id=seg from=79 to=91)
AMDSBA1_43_23
Streptomyces albulus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22936..23730
DNA (795bp) protein (265aa)
cyclase family protein
Metal-dependent hydrolase n=7 Tax=Bacillus cereus group RepID=C2SVM4_BACCE (db=UNIREF evalue=1.6e-13 bit_score=82.4 identity=25.6 coverage=78.11320754716982)
seg (db=Seg db_id=seg from=243 to=250)
seg (db=Seg db_id=seg from=155 to=161)
AMDSBA1_43_24
unknown

Not on your lists

23730..24023
DNA (294bp) protein (98aa)
seg (db=Seg db_id=seg from=71 to=85)
AMDSBA1_43_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25169..25816
DNA (648bp) protein (216aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TYZ7_9FIRM (db=UNIREF evalue=5.8e-59 bit_score=233.0 identity=55.3 coverage=92.5925925925926)
transmembrane_regions (db=TMHMM db_id=tmhmm from=25 to=47)
seg (db=Seg db_id=seg from=26 to=42)
AMDSBA1_43_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25924..26757
DNA (834bp) protein (278aa)
cytochrome c oxidase subunit II
Cytochrome c oxidase subunit II n=2 Tax=Sulfobacillus acidophilus RepID=G8TS60_9FIRM (db=UNIREF evalue=4.8e-74 bit_score=283.5 identity=52.0 coverage=94.96402877697841)
transmembrane_regions (db=TMHMM db_id=tmhmm from=49 to=71)
transmembrane_regions (db=TMHMM db_id=tmhmm from=92 to=114)
orphaned in network : no_c_heme Nicholas Justice (1/17/13)
AMDSBA1_43_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26840..28756
DNA (1917bp) protein (639aa)
cytochrome c oxidase subunit I
Cytochrome c oxidase n=1 Tax=Sagittula stellata E-37 RepID=A3K8R0_9RHOB (db=UNIREF evalue=6.1e-64 bit_score=251.1 identity=31.6 coverage=78.09076682316119)
transmembrane_regions (db=TMHMM db_id=tmhmm from=234 to=256)
transmembrane_regions (db=TMHMM db_id=tmhmm from=192 to=214)
AMDSBA1_43_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28749..29318
DNA (570bp) protein (190aa)
seg (db=Seg db_id=seg from=98 to=108)
transmembrane_regions (db=TMHMM db_id=tmhmm from=168 to=187)
transmembrane_regions (db=TMHMM db_id=tmhmm from=127 to=149)
transmembrane_regions (db=TMHMM db_id=tmhmm from=93 to=112)
orphaned in network Nicholas Justice (1/17/13)
AMDSBA1_43_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29368..29556
DNA (189bp) protein (63aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TS63_9FIRM (db=UNIREF evalue=1.8e-08 bit_score=63.5 identity=53.2 coverage=73.01587301587301)
transmembrane_regions (db=TMHMM db_id=tmhmm from=24 to=41)
Uncharacterized protein {ECO:0000313|EMBL:AEW05180.1}; TaxID=679936 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfob
AMDSBA1_43_30
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29632..31011
DNA (1380bp) protein (460aa)
helix-turn-helix domain-containing protein
Helix-turn-helix domain protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TSN5_9FIRM (db=UNIREF evalue=6.0e-45 bit_score=187.6 identity=35.8 coverage=68.47826086956522)
seg (db=Seg db_id=seg from=15 to=26)
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=262 to=326 evalue=4.0e-06 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
Displaying 30 items

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