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AMDSBA3_16

Alias: AMDSBA3_C15

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Displaying items 1-30 of 46 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA3_16_1
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(294..2036)
DNA (1743bp) protein (581aa)
ABC transporter periplasmic protein
Putative peptide-binding transport protein n=1 Tax=Streptomyces himastatinicus ATCC 53653 RepID=D9WCT2_9ACTO (db=UNIREF evalue=5.7e-69 bit_score=267.7 identity=31.5 coverage=91.73838209982789)
seg (db=Seg db_id=seg from=5 to=33)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
AMDSBA3_16_2
Pyrococcus yayanosii, Pyrococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

comp(2228..2947)
DNA (720bp) protein (240aa)
aspartate racemase
Aspartate racemase n=1 Tax=Sagittula stellata E-37 RepID=A3K6Y0_9RHOB (db=UNIREF evalue=3.4e-23 bit_score=114.4 identity=33.2 coverage=81.66666666666667)
seg (db=Seg db_id=seg from=4 to=16)
asp_race: aspartate racemase (db=HMMTigr db_id=TIGR00035 from=1 to=239 evalue=1.2e-39 interpro_id=IPR004380 interpro_description=Aspartate racemase GO=Biological Process: cellular amino acid metabolic process (GO:0006520), Molecular Function: racemase and epimerase activity, acting on amino acids and derivatives (GO:0016855))
AMDSBA3_16_3
Thermosinus carboxydivorans, Thermosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(2993..4027)
DNA (1035bp) protein (345aa)
D-cysteine desulfhydrase family pyridoxal phosphate-dependent protein (EC:4.4.1.15)
Pyridoxal phosphate-dependent enzyme, D-cysteine desulfhydrase family n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9R308_9RHOB (db=UNIREF evalue=8.4e-84 bit_score=316.2 identity=51.7 coverage=93.91304347826087)
seg (db=Seg db_id=seg from=156 to=171)
seg (db=Seg db_id=seg from=228 to=241)
AMDSBA3_16_4
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

4389..6230
DNA (1842bp) protein (614aa)
X-Pro dipeptidyl-peptidase domain-containing protein
X-Pro dipeptidyl-peptidase domain-containing protein
DNA polymerase III subunit delta' n=1 Tax=alpha proteobacterium BAL199 RepID=A8TUT9_9PROT (db=UNIREF evalue=2.0e-24 bit_score=119.8 identity=28.6 coverage=58.95765472312704)
/NonD: hydrolase CocE/NonD family protein (db=HMMTigr db_id=TIGR00976 from=13 to=609 evalue=3.4e-67 interpro_id=IPR005674 interpro_description=CocE/NonD hydrolase GO=Biological Process: metabolic process (GO:0008152), Molecular Function: hydrolase activity (GO:0016787))
AMDSBA3_16_5
unknown

Not on your lists

comp(6325..6528)
DNA (204bp) protein (68aa)
6325..6528 - ( gc_cont=0.588)
AMDSBA3_16_6
Alicyclobacillus hesperidum, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6841..7149)
DNA (309bp) protein (103aa)
seg (db=Seg db_id=seg from=68 to=81)
Uncharacterized protein n=1 Tax=Alicyclobacillus hesperidum URH17-3-68 RepID=J9HSK9_9BACL
Uncharacterized protein {ECO:0000313|EMBL:EJY55210.1}; TaxID=1200346 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.;" source="Alicyclobacillus hesperidum UR
AMDSBA3_16_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7762..8919)
DNA (1158bp) protein (386aa)
formyl-CoA transferase (EC:2.8.3.16)
Predicted acyl-CoA transferase/carnitine dehydratase n=2 Tax=Cupriavidus necator RepID=Q0K1G3_CUPNH (db=UNIREF evalue=3.6e-83 bit_score=314.3 identity=41.8 coverage=96.37305699481865)
CoA-transferase family III (CaiB/BaiF) (db=superfamily db_id=SSF89796 from=1 to=381 evalue=2.1e-133 interpro_id=IPR023606 interpro_description=CoA-transferase family III domain)
ALPHA METHYLACYL-COA RACEMASE (db=HMMPanther db_id=PTHR11837 from=15 to=382 evalue=9.1e-120 interpro_id=IPR003673 interpro_description=CoA-transferase family III GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
AMDSBA3_16_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9011..10393)
DNA (1383bp) protein (461aa)
dihydropyrimidinase
dihydropyrimidinase
D-hydantoinase/dihydropyrimidinase n=22 Tax=Pseudomonas RepID=HYDA_PSEAE (db=UNIREF evalue=1.0e-108 bit_score=399.4 identity=44.6 coverage=98.91540130151843)
AMDSBA3_16_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10429..11688)
DNA (1260bp) protein (420aa)
dihydroorotate dehydrogenase family protein (EC:1.3.1.2)
dihydroorotate dehydrogenase family protein (EC:1.3.1.2)
Dihydroorotate dehydrogenase family protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TUS7_9FIRM (db=UNIREF evalue=1.9e-202 bit_score=710.7 identity=80.4 coverage=98.33333333333333)
AMDSBA3_16_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11711..13045)
DNA (1335bp) protein (445aa)
glutamate synthase (NADPH) (EC:1.4.1.13)
glutamate synthase (NADPH) (EC:1.4.1.13)
Ferredoxin:NADP oxidoreductase, large subunit n=2 Tax=Desulfurococcaceae RepID=I3TFK3_9CREN (db=UNIREF evalue=2.3e-62 bit_score=245.4 identity=35.3 coverage=96.40449438202248)
seg (db=Seg db_id=seg from=132 to=155)
AMDSBA3_16_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13127..14587)
DNA (1461bp) protein (487aa)
aldehyde dehydrogenase
Delta-1-pyrroline-5-carboxylate dehydrogenase n=3 Tax=Anaeromyxobacter RepID=B4UF03_ANASK (db=UNIREF evalue=1.7e-50 bit_score=206.1 identity=33.2 coverage=88.7063655030801)
seg (db=Seg db_id=seg from=42 to=52)
seg (db=Seg db_id=seg from=200 to=213)
AMDSBA3_16_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14655..15542)
DNA (888bp) protein (296aa)
nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
Beta-ureidopropionase n=7 Tax=Geobacillus RepID=F8CZ87_BACTR (db=UNIREF evalue=2.0e-126 bit_score=457.6 identity=70.5 coverage=98.98648648648648)
AMDSBA3_16_13
Alicyclobacillus acidoterrestris, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

16167..16709
DNA (543bp) protein (181aa)
Transcriptional regulator, PadR-like family n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TVJ5_9CHLR (db=UNIREF evalue=1.1e-31 bit_score=142.1 identity=40.3 coverage=96.13259668508287)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=2 to=180 evalue=6.7e-25)
(db=HMMPfam db_id=PF03551 from=2 to=77 evalue=3.5e-13 interpro_id=IPR005149 interpro_description=Transcription regulator PadR N-terminal)
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=2 to=89 evalue=2.1e-11 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
AMDSBA3_16_14
Pediococcus claussenii, Pediococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

16706..16987
DNA (282bp) protein (94aa)
H+ antiporter-2 family protein
Drug resistance transporter EmrB/QacA subfamily n=1 Tax=Methylobacillus flagellatus KT RepID=Q1H3Z4_METFK (db=UNIREF evalue=7.5e-11 bit_score=72.0 identity=48.8 coverage=80.85106382978722)
transmembrane_regions (db=TMHMM db_id=tmhmm from=50 to=72)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
AMDSBA3_16_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17111..18706)
DNA (1596bp) protein (532aa)
Acetate--CoA ligase (EC:6.2.1.1)
Uncharacterized protein PA3568 n=17 Tax=Pseudomonas RepID=Y3568_PSEAE (db=UNIREF evalue=1.4e-53 bit_score=216.5 identity=31.9 coverage=90.0375939849624)
MIDDLE-CHAIN ACYL-COA SYNTHETASE1 (MEDIUM-CHAIN ACYL-COA SYNTHETASE) (db=HMMPanther db_id=PTHR11968:SF39 from=45 to=525 evalue=3.8e-147)
AMP_BINDING (db=PatternScan db_id=PS00455 from=174 to=185 evalue=0.0 interpro_id=IPR020845 interpro_description=AMP-binding, conserved site)
AMDSBA3_16_16
GWA2_OD1_36_10, Parcubacteria, Bacteria

Not on your lists

comp(19021..19623)
DNA (603bp) protein (201aa)
putative hydrolase
HAD-like (db=superfamily db_id=SSF56784 from=1 to=192 evalue=5.0e-28 interpro_id=IPR023214 interpro_description=HAD-like domain)
HALOACID DEHALOGENASE-LIKE HYDROLASE (db=HMMPanther db_id=PTHR12725 from=78 to=184 evalue=8.2e-16)
HALOACID DEHALOGENASE-LIKE HYDROLASE DOMAIN CONTAINING 3 (db=HMMPanther db_id=PTHR12725:SF5 from=78 to=184 evalue=8.2e-16)
AMDSBA3_16_17
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19642..21069)
DNA (1428bp) protein (476aa)
succinate-semialdehyde dehydrogenase
Succinate-semialdehyde dehdyrogenase protein n=1 Tax=Sinorhizobium fredii GR64 RepID=F7XYU5_RHIFR (db=UNIREF evalue=6.7e-116 bit_score=423.3 identity=45.1 coverage=99.15966386554622)
seg (db=Seg db_id=seg from=34 to=54)
seg (db=Seg db_id=seg from=188 to=202)
AMDSBA3_16_18
Symbiobacterium thermophilum, Symbiobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21132..22175)
DNA (1044bp) protein (348aa)
LacI family transcriptional repressor
Transcriptional regulator, LacI family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D2G2_PAESJ (db=UNIREF evalue=2.9e-28 bit_score=131.7 identity=28.5 coverage=86.7816091954023)
HTH_LACI_1 (db=PatternScan db_id=PS00356 from=11 to=29 evalue=0.0 interpro_id=IPR000843 interpro_description=Transcription regulator HTH, LacI GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
Periplasmic binding protein-like I (db=superfamily db_id=SSF53822 from=67 to=345 evalue=4.6e-78)
AMDSBA3_16_19
Serratia fonticola, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22238..22954)
DNA (717bp) protein (239aa)
fabG; 3-ketoacyl-ACP reductase (EC:1.1.1.100)
GA10311 n=2 Tax=pseudoobscura subgroup RepID=Q296L7_DROPS (db=UNIREF evalue=1.2e-17 bit_score=95.9 identity=32.4 coverage=87.44769874476988)
ADH_SHORT (db=PatternScan db_id=PS00061 from=133 to=161 evalue=0.0 interpro_id=IPR020904 interpro_description=Short-chain dehydrogenase/reductase, conserved site GO=Molecular Function: oxidoreductase activity (GO:0016491))
SHORT-CHAIN DEHYDROGENASES/REDUCTASE FAMILY MEMBER (db=HMMPanther db_id=PTHR19410 from=2 to=234 evalue=2.5e-114)
AMDSBA3_16_20
BJP_IG2069_Chloroflexi_70_12, Chloroflexi, Bacteria

Not on your lists

comp(22979..24160)
DNA (1182bp) protein (394aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9)
Putative acetyl-CoA C-acetyltransferase vraB n=31 Tax=Staphylococcus RepID=VRAB_STAEQ (db=UNIREF evalue=5.3e-50 bit_score=204.1 identity=34.9 coverage=95.93908629441624)
seg (db=Seg db_id=seg from=360 to=373)
THIOLASE_1 (db=PatternScan db_id=PS00098 from=85 to=103 evalue=0.0 interpro_id=IPR020615 interpro_description=Thiolase, acyl-enzyme intermediate active site GO=Biological Process: metabolic process (GO:0008152), Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747))
AMDSBA3_16_21
Moorella thermoacetica, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24160..25749)
DNA (1590bp) protein (530aa)
propionate CoA-transferase (EC:2.8.3.1)
propionate CoA-transferase (EC:2.8.3.1)
Propionate CoA-transferase n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3WB08_FUSMR (db=UNIREF evalue=9.8e-108 bit_score=396.4 identity=41.4 coverage=96.79245283018868)
AMDSBA3_16_22
GWC2_Deltaproteobacteria_65_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25875..27449)
DNA (1575bp) protein (525aa)
AMP-dependent synthetase and ligase
Long-chain fatty-acid-CoA ligase n=1 Tax=Methanosarcina barkeri str. Fusaro RepID=Q468H1_METBF (db=UNIREF evalue=4.9e-43 bit_score=181.4 identity=31.7 coverage=66.66666666666666)
transmembrane_regions (db=TMHMM db_id=tmhmm from=220 to=242)
transmembrane_regions (db=TMHMM db_id=tmhmm from=90 to=112)
AMDSBA3_16_23
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27430..28602)
DNA (1173bp) protein (391aa)
glycerate kinase (EC:2.7.1.31)
Glycerate kinase n=1 Tax=Klebsiella oxytoca 10-5246 RepID=H3MPI1_KLEOX (db=UNIREF evalue=1.7e-45 bit_score=189.1 identity=37.1 coverage=93.86189258312021)
seg (db=Seg db_id=seg from=215 to=231)
seg (db=Seg db_id=seg from=119 to=131)
AMDSBA3_16_24
Thermoanaerobacterium thermosaccharolyticum, Thermoanaerobacterium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29000..29347)
DNA (348bp) protein (116aa)
transposase, IS605 OrfB family
Putative uncharacterized protein n=8 Tax=Clostridiales RepID=B0NYL3_9CLOT (db=UNIREF evalue=7.8e-10 bit_score=68.9 identity=39.3 coverage=71.55172413793103)
coiled-coil (db=Coil db_id=coil from=46 to=71 evalue=NA)
seg (db=Seg db_id=seg from=46 to=68)
AMDSBA3_16_25
Thermoanaerobacterium thermosaccharolyticum, Thermoanaerobacterium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29393..29854)
DNA (462bp) protein (154aa)
transposase, IS605 OrfB family
Putative transposase InsQ for insertion sequence element IS609 n=855 Tax=Enterobacteriaceae RepID=INSQ_ECOLI (db=UNIREF evalue=2.0e-08 bit_score=64.7 identity=34.2 coverage=70.12987012987013)
(db=HMMPfam db_id=PF12323 from=20 to=59 evalue=9.1e-13 interpro_id=IPR021027 interpro_description=Transposase, putative, helix-turn-helix domain)
(db=HMMPfam db_id=PF01385 from=80 to=148 evalue=8.1e-12 interpro_id=IPR001959 interpro_description=Transposase, probable, IS891/IS1136/IS1341)
AMDSBA3_16_26
Peptococcaceae bacterium BRH_c23, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29805..30209)
DNA (405bp) protein (135aa)
transposase is200-family protein
Transposase IS200-like (db=superfamily db_id=SSF143422 from=1 to=131 evalue=1.1e-41 interpro_id=IPR002686 interpro_description=Transposase IS200-like GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transposase activity (GO:0004803), Biological Process: transposition, DNA-mediated (GO:0006313))
(db=HMMPfam db_id=PF01797 from=11 to=129 evalue=9.7e-40 interpro_id=IPR002686 interpro_description=Transposase IS200-like GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transposase activity (GO:0004803), Biological Process: transposition, DNA-mediated (GO:0006313))
Transposase {ECO:0000313|EMBL:KJS48563.1}; TaxID=1629714 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c23.;"
AMDSBA3_16_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31030..31860)
DNA (831bp) protein (277aa)
Thioesterase family protein n=19 Tax=Bacteroides RepID=C9L258_9BACE (db=UNIREF evalue=1.1e-09 bit_score=69.7 identity=24.6 coverage=96.028880866426)
COF_2 (db=PatternScan db_id=PS01229 from=215 to=237 evalue=0.0 interpro_id=IPR000150 interpro_description=Cof protein GO=Biological Process: metabolic process (GO:0008152), Molecular Function: hydrolase activity (GO:0016787))
HAD-like (db=superfamily db_id=SSF56784 from=1 to=265 evalue=8.8e-50 interpro_id=IPR023214 interpro_description=HAD-like domain)
(db=HMMPfam db_id=PF08282 from=5 to=260 evalue=1.2e-44 interpro_id=IPR013200 interpro_description=HAD superfamily hydrolase-like, type 3)
AMDSBA3_16_28
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

32190..33521
DNA (1332bp) protein (444aa)
extracellular solute-binding protein rbh
Extracellular solute-binding protein family 1 n=2 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius RepID=C8WU51_ALIAD (db=UNIREF evalue=4.8e-108 bit_score=397.1 identity=47.9 coverage=95.72072072072072)
seg (db=Seg db_id=seg from=8 to=26)
Periplasmic binding protein-like II (db=superfamily db_id=SSF53850 from=48 to=431 evalue=5.2e-51)
AMDSBA3_16_29
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

33567..34502
DNA (936bp) protein (312aa)
binding-protein-dependent transport system inner membrane protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=89 to=111)
transmembrane_regions (db=TMHMM db_id=tmhmm from=277 to=299)
transmembrane_regions (db=TMHMM db_id=tmhmm from=248 to=270)
AMDSBA3_16_30
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

34499..35335
DNA (837bp) protein (279aa)
binding-protein-dependent transport system inner membrane protein
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QFF0_CATAD (db=UNIREF evalue=1.2e-43 bit_score=182.6 identity=35.4 coverage=94.26523297491039)
transmembrane_regions (db=TMHMM db_id=tmhmm from=244 to=262)
transmembrane_regions (db=TMHMM db_id=tmhmm from=183 to=205)
Displaying items 1-30 of 46 in total

View Taxonomy