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AMDSBA4_16

Alias: AMDSBA4_C15

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Displaying items 1-30 of 90 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA4_16_1
unknown

Not on your lists

376..552
DNA (177bp) protein (59aa)
376..552 + ( gc_cont=0.559)
AMDSBA4_16_2
unknown

Not on your lists

940..1152
DNA (213bp) protein (71aa)
940..1152 + ( gc_cont=0.516)
AMDSBA4_16_3
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1325..2251)
DNA (927bp) protein (309aa)
seg (db=Seg db_id=seg from=54 to=63)
seg (db=Seg db_id=seg from=259 to=272)
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=11 to=263 evalue=1.2e-110)
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=161 to=175 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
AMDSBA4_16_4
Alicyclobacillus hesperidum, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2241..3230)
DNA (990bp) protein (330aa)
oligopeptide/dipeptide ABC transporter ATPase
Probable peptide ABC transporter ATP-binding protein y4tR n=1 Tax=Sinorhizobium fredii NGR234 RepID=Y4TR_RHISN (db=UNIREF evalue=5.1e-54 bit_score=217.2 identity=38.5 coverage=92.42424242424242)
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=7 to=323 evalue=5.1e-122)
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=154 to=168 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
AMDSBA4_16_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3223..4179)
DNA (957bp) protein (319aa)
ABC transporter
Binding-protein-dependent transport systems inner membrane component n=3 Tax=Zymomonas mobilis subsp. mobilis RepID=C8WAY6_ZYMMN (db=UNIREF evalue=9.0e-16 bit_score=90.1 identity=26.0 coverage=81.50470219435736)
transmembrane_regions (db=TMHMM db_id=tmhmm from=267 to=289)
transmembrane_regions (db=TMHMM db_id=tmhmm from=215 to=237)
AMDSBA4_16_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4176..5171)
DNA (996bp) protein (332aa)
ABC transporter
ABC transporter
ABC-type transporter, integral membrane subunit n=2 Tax=Sulfobacillus acidophilus RepID=G8TSA4_9FIRM (db=UNIREF evalue=3.8e-142 bit_score=510.0 identity=73.2 coverage=97.59036144578313)
seg (db=Seg db_id=seg from=144 to=163)
AMDSBA4_16_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5182..6816)
DNA (1635bp) protein (545aa)
ABC transporter periplasmic protein
ABC-type transporter, periplasmic subunit n=2 Tax=Sulfobacillus acidophilus RepID=G8TSA3_9FIRM (db=UNIREF evalue=1.4e-197 bit_score=694.9 identity=61.9 coverage=97.24770642201835)
seg (db=Seg db_id=seg from=25 to=39)
AMDSBA4_16_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6872..9223)
DNA (2352bp) protein (784aa)
beta-galactosidase (EC:3.2.1.23)
beta-galactosidase (EC:3.2.1.23)
Beta-galactosidase n=2 Tax=Sulfobacillus acidophilus RepID=G8TSA2_9FIRM (db=UNIREF evalue=7.3e-152 bit_score=543.5 identity=42.0 coverage=86.98979591836735)
AMDSBA4_16_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9325..10317)
DNA (993bp) protein (331aa)
LacI family transcriptional regulator
Putative LacI family transcriptional regulator n=1 Tax=Kitasatospora setae KM-6054 RepID=E4N4G7_KITSK (db=UNIREF evalue=3.4e-42 bit_score=177.9 identity=32.2 coverage=97.2809667673716)
Periplasmic binding protein-like I (db=superfamily db_id=SSF53822 from=60 to=324 evalue=1.1e-72)
no description (db=Gene3D db_id=G3DSA:3.40.50.2300 from=156 to=297 evalue=1.3e-43)
AMDSBA4_16_10
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10529..10957
DNA (429bp) protein (143aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Kyrpidia tusciae DSM 2912 RepID=D5WWU6_BACT2 (db=UNIREF evalue=3.8e-38 bit_score=163.3 identity=52.9 coverage=95.8041958041958)
Sterol carrier protein, SCP (db=superfamily db_id=SSF55718 from=1 to=140 evalue=7.8e-24 interpro_id=IPR003033 interpro_description=SCP2 sterol-binding domain GO=Molecular Function: sterol binding (GO:0032934))
Uncharacterized protein n=1 Tax=Bacillus tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WWU6_BACT2
AMDSBA4_16_11
Thermaerobacter subterraneus, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10954..11994
DNA (1041bp) protein (347aa)
alcohol dehydrogenase GroES domain-containing protein rbh
L-threonine 3-dehydrogenase n=1 Tax=Granulicella mallensis MP5ACTX8 RepID=G8NSI2_GRAMM (db=UNIREF evalue=1.0e-36 bit_score=159.8 identity=33.0 coverage=90.77809798270894)
ADH_ZINC (db=PatternScan db_id=PS00059 from=59 to=73 evalue=0.0 interpro_id=IPR002328 interpro_description=Alcohol dehydrogenase, zinc-type, conserved site GO=Molecular Function: zinc ion binding (GO:0008270), Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation-reduction process (GO:0055114))
ZINC-TYPE ALCOHOL DEHYDROGENASE-RELATED (db=HMMPanther db_id=PTHR11695:SF38 from=11 to=346 evalue=1.2e-91)
AMDSBA4_16_12
Thermaerobacter subterraneus, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12045..13547
DNA (1503bp) protein (501aa)
aldehyde dehydrogenase (EC:1.2.1.3 1.2.99.3) rbh
Whole genome shotgun sequence assembly, scaffold_11, strain Mel28 n=1 Tax=Tuber melanosporum Mel28 RepID=D5G5H0_TUBMM (db=UNIREF evalue=4.1e-116 bit_score=424.1 identity=44.4 coverage=95.00998003992017)
seg (db=Seg db_id=seg from=319 to=328)
seg (db=Seg db_id=seg from=202 to=215)
AMDSBA4_16_13
unknown

Not on your lists

14525..14680
DNA (156bp) protein (52aa)
14525..14680 + ( gc_cont=0.590)
AMDSBA4_16_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14717..14950)
DNA (234bp) protein (78aa)
transposase IS3/IS911 family protein (db=KEGG evalue=1.3e-08 bit_score=63.9 identity=57.6 coverage=71.7948717948718)
Transposase IS3/IS911 family protein n=5 Tax=Sulfobacillus acidophilus RepID=G8TUF1_9FIRM (db=UNIREF evalue=1.7e-08 bit_score=63.9 identity=57.6 coverage=71.7948717948718)
AMDSBA4_16_15
Sulfobacillus thermotolerans, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15270..15674
DNA (405bp) protein (135aa)
Putative uncharacterized protein orfL19 n=2 Tax=Sulfobacillus thermotolerans RepID=G5CIZ0_9FIRM (db=UNIREF evalue=1.5e-17 bit_score=94.7 identity=40.6 coverage=92.5925925925926)
vitamin K epoxide reductase (db=KEGG evalue=4.4e-12 bit_score=76.3 identity=33.6 coverage=85.92592592592592)
transmembrane_regions (db=TMHMM db_id=tmhmm from=79 to=98)
transmembrane_regions (db=TMHMM db_id=tmhmm from=50 to=72)
AMDSBA4_16_16
Sporomusa ovata, Sporomusa, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(15671..16033)
DNA (363bp) protein (121aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. DL-VIII RepID=G7M5X0_9CLOT (db=UNIREF evalue=7.9e-13 bit_score=79.0 identity=39.6 coverage=77.68595041322314)
Uncharacterized protein {ECO:0000313|EMBL:EQB26593.1}; TaxID=1123288 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Sporomusa.;" source="Sporomusa ovata DSM 2662.;"
Uncharacterized protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6T4R3_9CLOT
hypothetical protein
AMDSBA4_16_17
Paenibacillus macerans, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(16058..17293)
DNA (1236bp) protein (412aa)
MFS transporter
transmembrane_regions (db=TMHMM db_id=tmhmm from=112 to=131)
transmembrane_regions (db=TMHMM db_id=tmhmm from=151 to=173)
transmembrane_regions (db=TMHMM db_id=tmhmm from=178 to=195)
AMDSBA4_16_18
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17283..20432)
DNA (3150bp) protein (1050aa)
alpha-mannosidase
Putative uncharacterized protein n=1 Tax=Lodderomyces elongisporus NRRL YB-4239 RepID=A5E7U5_LODEL (db=UNIREF evalue=1.2e-48 bit_score=201.1 identity=28.5 coverage=44.761904761904766)
ALPHA-MANNOSIDASE 2C1 (ALPHA-D-MANNOSIDE MANNOHYDROLASE) (db=HMMPanther db_id=PTHR11607:SF2 from=241 to=975 evalue=4.9e-93)
seg (db=Seg db_id=seg from=462 to=469)
AMDSBA4_16_19
Paenibacillus sp. VKM B-2647, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(20429..21718)
DNA (1290bp) protein (430aa)
phosphoesterase PHP domain-containing protein rbh
Putative secreted protein n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CEN3_9RHOB (db=UNIREF evalue=1.9e-53 bit_score=215.7 identity=34.2 coverage=87.44186046511628)
seg (db=Seg db_id=seg from=297 to=306)
PHP domain-like (db=superfamily db_id=SSF89550 from=120 to=324 evalue=4.5e-38 interpro_id=IPR016195 interpro_description=Polymerase/histidinol phosphatase-like GO=Molecular Function: catalytic activity (GO:0003824))
AMDSBA4_16_20
Paenibacillus sp. JCM 10914, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(21851..23356)
DNA (1506bp) protein (502aa)
Aerobic glycerol-3-phosphate dehydrogenase n=1 Tax=Desmospora sp. 8437 RepID=F5SCW8_9BACL (db=UNIREF evalue=1.8e-71 bit_score=275.8 identity=35.0 coverage=95.4183266932271)
FAD dependent oxidoreductase
GLYCEROL-3-PHOSPHATE DEHYDROGENASE (db=HMMPanther db_id=PTHR11985 from=1 to=481 evalue=1.6e-94)
(db=HMMPfam db_id=PF01266 from=2 to=302 evalue=3.6e-34 interpro_id=IPR006076 interpro_description=FAD dependent oxidoreductase GO=Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA4_16_21
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23439..24689)
DNA (1251bp) protein (417aa)
Alkyldihydroxyacetonephosphate synthase n=4 Tax=Caenorhabditis RepID=ADAS_CAEEL (db=UNIREF evalue=2.6e-07 bit_score=62.4 identity=29.6 coverage=30.215827338129497)
seg (db=Seg db_id=seg from=367 to=380)
D-LACTATE DEHYDROGENASE (db=HMMPanther db_id=PTHR11748 from=4 to=415 evalue=2.3e-103)
ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE (db=HMMPanther db_id=PTHR11748:SF3 from=4 to=415 evalue=2.3e-103)
AMDSBA4_16_22
unknown

Not on your lists

25487..25624
DNA (138bp) protein (46aa)
25487..25624 + ( gc_cont=0.507)
AMDSBA4_16_23
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

25687..26883
DNA (1197bp) protein (399aa)
major facilitator superfamily MFS_1
Major facilitator superfamily MFS_1 n=1 Tax=Burkholderia ambifaria IOP40-10 RepID=B1FLL6_9BURK (db=UNIREF evalue=9.9e-12 bit_score=77.0 identity=25.2 coverage=92.73182957393483)
transmembrane_regions (db=TMHMM db_id=tmhmm from=73 to=95)
transmembrane_regions (db=TMHMM db_id=tmhmm from=99 to=121)
AMDSBA4_16_24
Thermaerobacter subterraneus, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27303..27851
DNA (549bp) protein (183aa)
adenosyl transferase
Cobalamin adenosyltransferase-like (db=superfamily db_id=SSF89028 from=20 to=164 evalue=1.5e-18 interpro_id=IPR016030 interpro_description=Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like)
no description (db=Gene3D db_id=G3DSA:1.20.1200.10 from=20 to=170 evalue=8.8e-16 interpro_id=IPR016030 interpro_description=Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like)
Q5SH04_THET8_Q5SH04; (db=BlastProDom db_id=PD007457 from=24 to=164 evalue=5.0e-11 interpro_id=IPR017858 interpro_description=Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, PduO-type, N-terminal GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: cob(I)yrinic acid a,c-diamide adenosyltransferase activity (GO:0008817), Biological Process: cobalamin biosynthetic process (GO:0009236))
AMDSBA4_16_25
Geobacillus caldoxylosilyticus, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

28033..28983
DNA (951bp) protein (317aa)
adenine-specific DNA methyltransferase rbh
DNA adenine methylase n=1 Tax=uncultured archaeon RepID=I3RL07_9ARCH (db=UNIREF evalue=1.2e-63 bit_score=249.2 identity=48.0 coverage=84.54258675078864)
N6_MTASE (db=PatternScan db_id=PS00092 from=223 to=229 evalue=0.0 interpro_id=IPR002052 interpro_description=DNA methylase, N-6 adenine-specific, conserved site GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: methyltransferase activity (GO:0008168), Biological Process: methylation (GO:0032259))
dam: DNA adenine methylase (db=HMMTigr db_id=TIGR00571 from=45 to=313 evalue=3.8e-122 interpro_id=IPR012327 interpro_description=D12 class N6 adenine-specific DNA methyltransferase GO=Molecular Function: site-specific DNA-methyltransferase (adenine-specific) activity (GO:0009007), Biological Process: DNA methylation on adenine (GO:0032775))
AMDSBA4_16_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29186..29563
DNA (378bp) protein (126aa)
coiled-coil (db=Coil db_id=coil from=28 to=49 evalue=NA)
coiled-coil (db=Coil db_id=coil from=70 to=91 evalue=NA)
hypothetical protein
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8U174_SULAD
AMDSBA4_16_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29596..31197)
DNA (1602bp) protein (534aa)
acs; AMP-dependent synthetase and ligase
Acetyl-coenzyme A synthetase 1 n=1 Tax=Debaryomyces hansenii CBS767 RepID=ACS1_DEBHA (db=UNIREF evalue=1.4e-48 bit_score=199.9 identity=36.2 coverage=66.29213483146067)
seg (db=Seg db_id=seg from=271 to=287)
seg (db=Seg db_id=seg from=233 to=246)
AMDSBA4_16_28
unknown

Not on your lists

31365..31604
DNA (240bp) protein (80aa)
31365..31604 + ( gc_cont=0.546)
AMDSBA4_16_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31984..33423)
DNA (1440bp) protein (480aa)
metallophosphoesterase
metallophosphoesterase
5'-Nucleotidase domain protein n=1 Tax=Methanosphaerula palustris E1-9c RepID=B8GGR9_METPE (db=UNIREF evalue=1.7e-87 bit_score=328.9 identity=40.6 coverage=90.41666666666667)
AMDSBA4_16_30
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33704..35053)
DNA (1350bp) protein (450aa)
yhgE; YhgE/Pip C-terminal domain-containing protein
YhgE/Pip N-terminal domain protein n=2 Tax=Geobacillus RepID=B4BIU7_9BACI (db=UNIREF evalue=6.1e-18 bit_score=97.8 identity=29.8 coverage=50.0)
transmembrane_regions (db=TMHMM db_id=tmhmm from=352 to=374)
transmembrane_regions (db=TMHMM db_id=tmhmm from=322 to=339)
Displaying items 1-30 of 90 in total

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